Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0006610 | OGI:04040770 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:13284560-13287836 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aggtttcgttggaatggctccaaactcttcccggtatttcgtcgagcacctgctctgctaccgtcttctccgtcaacatcgcgcgccggcgctgcccatctcagctccaactcctccacagctggccaatggaaggccgccatccggggctgcctcgactccggattccccgcggcggccgtatccaccttcaccgcgatgctccgcgccggcgcacgcccggacggctacacgctcccgctcctcaaccgcgccgcggcctccctccccgcccaccgcggcgaggccgggatcgtcggcgcagcccacgccgttggcgtcaggacgggcttcgccgccaacgtctacttctgcaacacgctggtggacgcctacgcgcggcgcgggatggtcgcgcgtgccaggaagctgttcgacgaaatgcccgcgcgcgatgtggtttcttggacgtcgctggtctctgggcacgccggtgtcggggacgtccgggaagtgtcctgcctgctgtcgggcatgcgggtggacggctgcgagccgagcgccgtgactctcatggtggtgctccgcgcgtgcacgtccaatgaggacgtcgttggcggggggcagctgcactactacgcggtgaagagtgggttgagtgataatctactagttctcaattcgatcttgatgtacttgtgcaggttgccagccttggacgacgcggtggcgctgttcaagcagtctcctagaagagaagcaatttcttggaacattatgatctcagaatattcttcggaagggaacatttccaaagttgctgaaatgtatcaaaggatgagaagagaggaggtgtgtcctagctgccagaccttaaccacagtagttgctgcattcgccaagtgcaagtgtctctgagaaggtgagaaactgcattctttcgcatttaggagctgtttcagcgatgcaattttggtggagtcctctgttgatttttatgccaaaatgcgacagattagcttgatcagttcagtcatttgaagaattcagcgacacaggcagttgcatatggtcagccatgaattggagcttcatttgctgttggcagtttatagaagtaatacatttgtttgggcgaatgttaaattctacatttgttccagtgttgacatgctgcaaggattagtcatcagttacagagaacttggtgcactacggctaggtaaagcaactcatgggtacatgataagaaacaattatgaagcacaatctgaaaagagcgccttggtgacatccatcgttaaactctatgctaggctgctagctgtgggagcgttaatttggcgcgaaggtgctttgacagcatccatcagaaagatattgttgcctggagttcaattattgaagcatacatgatccatggctatggtatggagccatggaggctctggcaatctggcattgttccacaggatgctagacgaaggagtaaggccaaacggggtgactttcctgagcttgttgtcagcatgtagttactctgggcttgttaatgaagctcatgagttgtttgattgcatgacaacaatgtttggcttcacacctgagcttggccattacacctgcatggtggatgttcttggacgatcaggcaacctagatgatgctttgcaagttatcagtgatatgaatgttaaagccagatgggagaatttggggtgctctccttgcttcatgcaggacatactcgaacagtaagcttgcttcttatgcggctcagaaacttatggaattggaaccaggtaatgttggctaccatgtggtgttcagcaatacccaagctagtagtgatcggtgggatgaagttgaaagcattagaagctctatggtagagatggacctgcaaaagctgcctgcatggacctgtgttgctgagactggtagcccttgatttgtattttccatcacttcccaaaacttatgttgatttggtcagaagatgaccaaaagatttgtggaagttgctgtatgactatattggactgaactgtatcaactgttgatttttcagggtgtgagattgaagtttctatagatgggccctgtagccagtgcactgttcttcggaaccgatcccctcgtggccgccgctgtcaatggggattgttggtggcaggcagagttcagctgcttgctcgagggtcaaatcggtcggattggatgggatgcgaatatctggcattactggccgtgaagttctcaggtgggatttccttccattgcttcgttctctgtaatctttacttatgccatgacttcacttgtgtggattgatctttaacaaactgcatagctattgcctttttctgatctgaatattgatcccatgttcttcagttttgtcagatttcagaatttataagttccaagtggcatacaaatagagaagtagacagttcaatataattcccgtagatttaaactcccaacaaatggaaatggaatccgtctgttaaaattctatgcacccaaatgggggcaggaaggaatcagaaatcagaaacaggctatggtaaaaaaattatccccagtcatcatcagtaaagtaaaatatgagaaacaaaccgatgtcctaccagatcaaagtgatgcttaaagccatgattaaagtagcttaaatgctcctttcctgacatagcagtgacttcaatgcataaattgtaaagattggcgggctgtttcaatcatctacatgtccagcaaatataatgtaatcagccacttgttcttcaaataatatctagtctgatgcctgtcgccacttgtagatgacattgcagcgacttcaacgcgtgaagtataaacaatgctgacctgtctcaatcatctacatttccagcaaataataccgcccacagtttgtcttacaaatactgtttgtcaaatagtgtatgatcccaaaagtaataccatccacggtttgtcttaaaaatcctgcagctcacaagctctgaaactggttaatagaaggtggaaacacaaacgggctcactagaagacgctgcatggttcttttgcgcctgttctcattcgtagtcccatctggagctgtagaaccgtcaggatgtgaagaaacacgatgagcaacagagtgggtatttcagcatcactcctagtaagtagattttggtgttacagtaaaatttatgtcggatacatttcagagttcgtttttgtagccttctgttgacctgctatgatccacttttttcttacctgtctgcacaagattttgatt
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| CDS seq | atgctccgcgccggcgcacgcccggacggctacacgctcccgctcctcaaccgcgccgcggcctccctccccgcccaccgcggcgaggccgggatcgtcggcgcagcccacgccgttggcgtcaggacgggcttcgccgccaacgtctacttctgcaacacgctggtggacgcctacgcgcggcgcgggatggtcgcgcgtgccaggaagctgttcgacgaaatgcccgcgcgcgatgtggtttcttggacgtcgctggtctctgggcacgccggtgtcggggacgtccgggaagtgtcctgcctgctgtcgggcatgcgggtggacggctgcgagccgagcgccgtgactctcatggtggtgctccgcgcgtgcacgtccaatgaggacgtcgttggcggggggcagctgcactactacgcggtgaagagtgggttgagtgataatctactagttctcaattcgatcttgatgtacttgtgcaggttgccagccttggacgacgcggtggcgctgttcaagcagtctcctagaagagaagcaatttcttggaacattatgatctcagaatattcttcggaagggaacatttccaaagttgctgaaatgtatcaaaggatgagaagagaggaggtgtgtcctagctgccagaccttaaccacagtagttgctgcattcgccaagtgcaaaattcagcgacacaggcagttgcatatggtcagccatgaattggagcttcatttgctgttggcagtttatagaagtaatacatttgtttgggcgaatgttaaattctacatttgttccagtgttgacatgctgcaaggattagtcatcagttacagagaacttggtgcactacggctaggtaaagcaactcatgggtacatgataagaaacaattatgaagcacaatctgaaaagagcgccttggtgacatccatcgttaaactctatgctaggctgctagctgtgggagcgttaatttggcgcgaaggtgctttgacagcatccatcagaaagatattgttgcctggagttcaattattgaagcatacatga
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| Protein seq | MLRAGARPDGYTLPLLNRAAASLPAHRGEAGIVGAAHAVGVRTGFAANVYFCNTLVDAYARRGMVARARKLFDEMPARDVVSWTSLVSGHAGVGDVREVSCLLSGMRVDGCEPSAVTLMVVLRACTSNEDVVGGGQLHYYAVKSGLSDNLLVLNSILMYLCRLPALDDAVALFKQSPRREAISWNIMISEYSSEGNISKVAEMYQRMRREEVCPSCQTLTTVVAAFAKCKIQRHRQLHMVSHELELHLLLAVYRSNTFVWANVKFYICSSVDMLQGLVISYRELGALRLGKATHGYMIRNNYEAQSEKSALVTSIVKLYARLLAVGALIWREGALTASIRKILLPGVQLLKHT |
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| Function | Pentatricopeptide repeat-containing protein At4g04370 [UniProtKB/Swiss-Prot:Q9XE98] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0006610 | OsLiXu_04g0006610.02 | Chr04 | 13285958 | 13286982 | + | NAM | ||
| CDS seq | atggctatggtatggagccatggaggctctggcaatctggcattgttccacaggatgctagacgaaggagtaaggccaaacggggtgactttcctgagcttgttgtcagcatgtagttactctgggcttgttaatgaagctcatgagttgtttgattgcatgacaacaatgtttggcttcacacctgagcttggccattacacctgcatggtggatgttcttggacgatcaggcaacctagatgatgctttgcaagttatcagtgatatgaatgttaaagccagatgggagaatttggggacatactcgaacagtaagcttgcttcttatgcggctcagaaacttatggaattggaaccaggtaatgttggctaccatgtggtgttcagcaatacccaagctagtagtgatcggtgggatgaagttgaaagcattagaagctctatggtagagatggacctgcaaaagctgcctgcatggacctgtgttgctgagactgggtgtgagattgaagtttctatagatgggccctgtagccagtgcactgttcttcggaaccgatcccctcgtggccgccgctgtcaatggggattgttggtggcaggcagagttcagctgcttgctcgagggtcaaatcggtcggattggatgggatgcgaatatctggcattactggccgtgaagttctcagttttgtcagatttcagaatttataagttccaagtggcatacaaatag
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| Protein seq | MAMVWSHGGSGNLALFHRMLDEGVRPNGVTFLSLLSACSYSGLVNEAHELFDCMTTMFGFTPELGHYTCMVDVLGRSGNLDDALQVISDMNVKARWENLGTYSNSKLASYAAQKLMELEPGNVGYHVVFSNTQASSDRWDEVESIRSSMVEMDLQKLPAWTCVAETGCEIEVSIDGPCSQCTVLRNRSPRGRRCQWGLLVAGRVQLLARGSNRSDWMGCEYLALLAVKFSVLSDFRIYKFQVAYK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0006610 | OsLiXu_04g0006610.01 | Chr04 | 13284758 | 13285954 | + | NAM | ||
| CDS seq | atgctccgcgccggcgcacgcccggacggctacacgctcccgctcctcaaccgcgccgcggcctccctccccgcccaccgcggcgaggccgggatcgtcggcgcagcccacgccgttggcgtcaggacgggcttcgccgccaacgtctacttctgcaacacgctggtggacgcctacgcgcggcgcgggatggtcgcgcgtgccaggaagctgttcgacgaaatgcccgcgcgcgatgtggtttcttggacgtcgctggtctctgggcacgccggtgtcggggacgtccgggaagtgtcctgcctgctgtcgggcatgcgggtggacggctgcgagccgagcgccgtgactctcatggtggtgctccgcgcgtgcacgtccaatgaggacgtcgttggcggggggcagctgcactactacgcggtgaagagtgggttgagtgataatctactagttctcaattcgatcttgatgtacttgtgcaggttgccagccttggacgacgcggtggcgctgttcaagcagtctcctagaagagaagcaatttcttggaacattatgatctcagaatattcttcggaagggaacatttccaaagttgctgaaatgtatcaaaggatgagaagagaggaggtgtgtcctagctgccagaccttaaccacagtagttgctgcattcgccaagtgcaaaattcagcgacacaggcagttgcatatggtcagccatgaattggagcttcatttgctgttggcagtttatagaagtaatacatttgtttgggcgaatgttaaattctacatttgttccagtgttgacatgctgcaaggattagtcatcagttacagagaacttggtgcactacggctaggtaaagcaactcatgggtacatgataagaaacaattatgaagcacaatctgaaaagagcgccttggtgacatccatcgttaaactctatgctaggctgctagctgtgggagcgttaatttggcgcgaaggtgctttgacagcatccatcagaaagatattgttgcctggagttcaattattgaagcatacatga
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| Protein seq | MLRAGARPDGYTLPLLNRAAASLPAHRGEAGIVGAAHAVGVRTGFAANVYFCNTLVDAYARRGMVARARKLFDEMPARDVVSWTSLVSGHAGVGDVREVSCLLSGMRVDGCEPSAVTLMVVLRACTSNEDVVGGGQLHYYAVKSGLSDNLLVLNSILMYLCRLPALDDAVALFKQSPRREAISWNIMISEYSSEGNISKVAEMYQRMRREEVCPSCQTLTTVVAAFAKCKIQRHRQLHMVSHELELHLLLAVYRSNTFVWANVKFYICSSVDMLQGLVISYRELGALRLGKATHGYMIRNNYEAQSEKSALVTSIVKLYARLLAVGALIWREGALTASIRKILLPGVQLLKHT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0006610 | OsLiXu_04g0006610.03 | Chr04 | 13284560 | 13287836 | + | IsoSeq | ||
| CDS seq | aggtttcgttggaatggctccaaactcttcccggtatttcgtcgagcacctgctctgctaccgtcttctccgtcaacatcgcgcgccggcgctgcccatctcagctccaactcctccacagctggccaatggaaggccgccatccggggctgcctcgactccggattccccgcggcggccgtatccaccttcaccgcgatgctccgcgccggcgcacgcccggacggctacacgctcccgctcctcaaccgcgccgcggcctccctccccgcccaccgcggcgaggccgggatcgtcggcgcagcccacgccgttggcgtcaggacgggcttcgccgccaacgtctacttctgcaacacgctggtggacgcctacgcgcggcgcgggatggtcgcgcgtgccaggaagctgttcgacgaaatgcccgcgcgcgatgtggtttcttggacgtcgctggtctctgggcacgccggtgtcggggacgtccgggaagtgtcctgcctgctgtcgggcatgcgggtggacggctgcgagccgagcgccgtgactctcatggtggtgctccgcgcgtgcacgtccaatgaggacgtcgttggcggggggcagctgcactactacgcggtgaagagtgggttgagtgataatctactagttctcaattcgatcttgatgtacttgtgcaggttgccagccttggacgacgcggtggcgctgttcaagcagtctcctagaagagaagcaatttcttggaacattatgatctcagaatattcttcggaagggaacatttccaaagttgctgaaatgtatcaaaggatgagaagagaggaggtgtgtcctagctgccagaccttaaccacagtagttgctgcattcgccaagtgcaagtgt
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| Protein seq | RFRWNGSKLFPVFRRAPALLPSSPSTSRAGAAHLSSNSSTAGQWKAAIRGCLDSGFPAAAVSTFTAMLRAGARPDGYTLPLLNRAAASLPAHRGEAGIVGAAHAVGVRTGFAANVYFCNTLVDAYARRGMVARARKLFDEMPARDVVSWTSLVSGHAGVGDVREVSCLLSGMRVDGCEPSAVTLMVVLRACTSNEDVVGGGQLHYYAVKSGLSDNLLVLNSILMYLCRLPALDDAVALFKQSPRREAISWNIMISEYSSEGNISKVAEMYQRMRREEVCPSCQTLTTVVAAFAKCKC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AL | Chr04 | 13286801 | 13287836 | + | OsLiXu_04g0006610.02 | OsLiXu_04g0006610.02,OsLiXu_04g0006610.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.159107 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0350000 | SBH | 0.826316 | 1.227461 | 2.365032 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g21880 | RBH | 0.000000 | 0.056035 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0349600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0006400 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0007010 | RBH | 0.0 | 1.189371 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0006810 | RBH | 0.000000 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0006430 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0006860 | RBH | 0.0 | 2.442654 | 3.031863 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0198300 | RBH | 0.4356575 | 1.6524825 | 0.426009 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0006660 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0207700 | SBH | 1.133257 | 5.3772125 | 8.63377 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0006430 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0006740 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0006720 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019010 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0006870 | RBH | 0.111173 | 1.374377 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G006550 | RBH | 0.0 | 2.210013 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0006670 | RBH | 0.0 | 0.0 | 1.198520 |
