Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0004710 | OGI:04026840 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:8401089-8403811 | ||||||||
| Gene Symbol | MS188, OsMYB80, MYB80, OsMS188, BM1 | ||||||||||
| DNA seq | ggagcagtgggatttggtagtttggtgcgtgtgtcttgttgcctttagcagcttggagttgaggcaaaaatccaattctgctcaattggactcatggggagggctccatgctgtgacaagaacaacgtcaagaagggaccttggtcgcctgaggaggatgccaagctcaaggagttcatagagaagcatggcaccggcggcaattggattgctctccctcagaaagcaggtatatatatgtcaacttaatttcagagatcttgtgctagccctttggcgattttgttgtttttcccccttatgagttcatgtctaaataaggctcgatcaccttaatttgcagctggtttcttttcttctttgtagaactaattgatttgttttcttgggtctgttttgagagtttaatcagttgtattctatggatataactcctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtccccttctgtagatgaatatatgttcaagtctgaaagatcttatttactgctaattaagtataaggtttttccaattttttacatcgatcatttttctcttcgtggatactttgttaagacgataattcgttctatagtttatttagcactaatagtcgtacatcccttaatttgttaactggtcaagagtgtaatagatctctgacatagacgcaaacaatgttatgtcaggcttgccggctgccgcatgcaattataggtcttgatgtgactaccccgcttgttagaaaaacgcaatgcagatcaagatcttagaactcgtttgtttgaaaaaagatcctataatcctagttgaatcttccttatagaagctttttcatacatttaattttatgctagcactgagcaatatttggctgtttataagttatacatcattaattctcatccccctatagtttttacgcaatatttgagctatttggtcctgaatttctgaccttatttattctataattataggattgaggagatgtggcaaaagttgtaggcttagatggctaaattacctgaggcccaatattaagcatggagagttcacagagcatgaagacaggatcatctgcagcatgtttgccagtattgggagcaggtatatacatatatcacaatgcatatatagagttttctagattaagatgtacatttaaccttccttttatttcgatctacttaatttcatcccaaacatgcataagtatgacctgtttcttctccctagctagaagaatccttagaaactatagttatttactagtaatatgtagctaggagtatgtataatcatcagcaaatgaagagatacctaactatatatatgctctgatacaatttcaagtacacatttgagaaactttggcatctgtagtagctagatagctacctaccccaagtcttgtcttgtagaacagtacaaagatgacatgagaaaacctaacaaacaaggaaaaagaagaatgcatgcaaatcactcatttctacttgtcatccattttaggtggtctataatcgcgtcgcagctccccggcagaacggacaacgacatcaagaactactggaacaccaagctcaagaagaagctcctcggctcgagcgccgccgccgccgccgcgccgccacggatgcagcgtcatcagcagagccaccaccggtcgtctctcctcctgccgaactcgccgtcgctcaatcccggcggcggctacccaggcttcttctccggcgccggcggcttccatcctcaggaaccagctatgccgttaaccctaccaaccaccacccaggaattcatgctgggcactcactctggccatccaatggtgagcgcctctgcgctgctcaaccatctgcacggcgcatcacatcatcatcagctgcttgtgaaggaggagatcagcagcaacatgatcgtgtttggctccgaccagcagagctgcagctcgtcagatgggctggcggcgccacacagccaccaccacaatggcaatagggagttcatccttgatggctacagctatggcggcggctacggcaacagctgcatcgatcaagtcgacaacgacaagctgttccagcatcatcagcaggatgatcaggcacaagaacaacagcagcagctcgtgtacaactacgacgagatcaagcagctgctgatgaacacatcaaccacaagtaataatattaatgctggtcaggatcatggcggcagcatggaagcagggttgatcggctcacaagggaaggtaaccatgatgtaaattaaactgatcgattaaagaggagaggaaggcagcagctgggcgcggcaagattaaggatggattaattaaaccaaggtgtgttgttttttttactgttctttgattggattctaccgtacgtacgtgatgcatggcgcgtttaattgttgtggttAaaaaaaaacaatggaaagaagtgtgtcccgtgtcacggtcgcatgcacgtgccagtgcagctgctagtatagcgtttgcgttcgtgttacagcctgcagtgtgttgtatgtcactgtgacatgggatcgatcgatggatcatgatagagataatctctctctctctcttgctgttgtattctctctctctctcttttcagtatagtgtactctctcaactactgtggaaacttgattactgtgtggcacaggccagcagattcagt
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| CDS seq | atggggagggctccatgctgtgacaagaacaacgtcaagaagggaccttggtcgcctgaggaggatgccaagctcaaggagttcatagagaagcatggcaccggcggcaattggattgctctccctcagaaagcaggattgaggagatgtggcaaaagttgtaggcttagatggctaaattacctgaggcccaatattaagcatggagagttcacagagcatgaagacaggatcatctgcagcatgtttgccagtattgggagcaggtggtctataatcgcgtcgcagctccccggcagaacggacaacgacatcaagaactactggaacaccaagctcaagaagaagctcctcggctcgagcgccgccgccgccgccgcgccgccacggatgcagcgtcatcagcagagccaccaccggtcgtctctcctcctgccgaactcgccgtcgctcaatcccggcggcggctacccaggcttcttctccggcgccggcggcttccatcctcaggaaccagctatgccgttaaccctaccaaccaccacccaggaattcatgctgggcactcactctggccatccaatggtgagcgcctctgcgctgctcaaccatctgcacggcgcatcacatcatcatcagctgcttgtgaaggaggagatcagcagcaacatgatcgtgtttggctccgaccagcagagctgcagctcgtcagatgggctggcggcgccacacagccaccaccacaatggcaatagggagttcatccttgatggctacagctatggcggcggctacggcaacagctgcatcgatcaagtcgacaacgacaagctgttccagcatcatcagcaggatgatcaggcacaagaacaacagcagcagctcgtgtacaactacgacgagatcaagcagctgctgatgaacacatcaaccacaagtaataatattaatgctggtcaggatcatggcggcagcatggaagcagggttgatcggctcacaagggaaggtaaccatgatgtaa
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| Protein seq | MGRAPCCDKNNVKKGPWSPEEDAKLKEFIEKHGTGGNWIALPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFTEHEDRIICSMFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKLLGSSAAAAAAPPRMQRHQQSHHRSSLLLPNSPSLNPGGGYPGFFSGAGGFHPQEPAMPLTLPTTTQEFMLGTHSGHPMVSASALLNHLHGASHHHQLLVKEEISSNMIVFGSDQQSCSSSDGLAAPHSHHHNGNREFILDGYSYGGGYGNSCIDQVDNDKLFQHHQQDDQAQEQQQQLVYNYDEIKQLLMNTSTTSNNINAGQDHGGSMEAGLIGSQGKVTMM |
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| Function | Transcription factor MYB36 [UniProtKB/Swiss-Prot:Q9FKL2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0004710 | OsLiXu_04g0004710.01 | Chr04 | 8401089 | 8403811 | + | NAM | ||
| CDS seq | atggggagggctccatgctgtgacaagaacaacgtcaagaagggaccttggtcgcctgaggaggatgccaagctcaaggagttcatagagaagcatggcaccggcggcaattggattgctctccctcagaaagcaggattgaggagatgtggcaaaagttgtaggcttagatggctaaattacctgaggcccaatattaagcatggagagttcacagagcatgaagacaggatcatctgcagcatgtttgccagtattgggagcaggtggtctataatcgcgtcgcagctccccggcagaacggacaacgacatcaagaactactggaacaccaagctcaagaagaagctcctcggctcgagcgccgccgccgccgccgcgccgccacggatgcagcgtcatcagcagagccaccaccggtcgtctctcctcctgccgaactcgccgtcgctcaatcccggcggcggctacccaggcttcttctccggcgccggcggcttccatcctcaggaaccagctatgccgttaaccctaccaaccaccacccaggaattcatgctgggcactcactctggccatccaatggtgagcgcctctgcgctgctcaaccatctgcacggcgcatcacatcatcatcagctgcttgtgaaggaggagatcagcagcaacatgatcgtgtttggctccgaccagcagagctgcagctcgtcagatgggctggcggcgccacacagccaccaccacaatggcaatagggagttcatccttgatggctacagctatggcggcggctacggcaacagctgcatcgatcaagtcgacaacgacaagctgttccagcatcatcagcaggatgatcaggcacaagaacaacagcagcagctcgtgtacaactacgacgagatcaagcagctgctgatgaacacatcaaccacaagtaataatattaatgctggtcaggatcatggcggcagcatggaagcagggttgatcggctcacaagggaaggtaaccatgatgtaa
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| Protein seq | MGRAPCCDKNNVKKGPWSPEEDAKLKEFIEKHGTGGNWIALPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFTEHEDRIICSMFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKLLGSSAAAAAAPPRMQRHQQSHHRSSLLLPNSPSLNPGGGYPGFFSGAGGFHPQEPAMPLTLPTTTQEFMLGTHSGHPMVSASALLNHLHGASHHHQLLVKEEISSNMIVFGSDQQSCSSSDGLAAPHSHHHNGNREFILDGYSYGGGYGNSCIDQVDNDKLFQHHQQDDQAQEQQQQLVYNYDEIKQLLMNTSTTSNNINAGQDHGGSMEAGLIGSQGKVTMM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.386518 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0004930 | RBH | 0.0 | 6.146130 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0005570 | RBH | 0.0 | 2.217331 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005180 | RBH | 0.0 | 26.712370 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0005000 | RBH | 0.000000 | 0.645874 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0004900 | RBH | 0.0 | 24.663420 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0123000 | SBH | 0.142624 | 2.5656445 | 0.5611715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0004970 | RBH | 0.0 | 0.854710 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0130400 | SBH | 0.049661 | 1.401623 | 0.862335 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0004770 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0005090 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004840 | RBH | 0.0 | 19.558275 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0016750 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0004980 | RBH | 0.0 | 7.100623 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G005070 | RBH | 0.0 | 5.984223 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004890 | RBH | 0.0 | 2.936907 | 0.000000 |
