Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0004670 | OGI:04026510 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:8324618-8325329 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatgcgccgtcgcagttgcaggtgtagagcctccggccgacctccctggacgcgaacgcgtcggtgcaggcgtacttgaactggtcctcggagaggttgcgcttgtcccaggcgctgacgcgcacgtggtgcggcttgtccatctgcacgcccatcacctcccgcaccagcgcccgcagccccgcgcggcggaggtcgggcctccctagcgtgtcggcggcgagggcgcgcaggtccacggcgcgcggcacctccagcccgtacccgacccgcagcctggcggcgtcgtcgcggaccccgacgccgacgaaggtgtacctgggatcggcgaggaagcgggacagcgcgtcgggcaagtagtcggcgtggaggatctggaagacgaggcagcggcggtcgacgcagagctgcagcacggcgacggggcccggcacgggggcggcggggcgccactccacgtcgaggccgacgacgagcgggtggccgcagctgcggtggatgcggtacgtctcgcccagccaagactccaccttgccgccggacttggtgagcgttgcgtccaagaagtcctcgtcgaacgacaacaggtaggtgccactgccatcgtcgtagtatgcttcaatctcggtcgccatctcgctcgggtgcttgctatctctgcctctctctctgcgttggggtttttagtactggcatagaagacggagagtc
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| CDS seq | atggcgaccgagattgaagcatactacgacgatggcagtggcacctacctgttgtcgttcgacgaggacttcttggacgcaacgctcaccaagtccggcggcaaggtggagtcttggctgggcgagacgtaccgcatccaccgcagctgcggccacccgctcgtcgtcggcctcgacgtggagtggcgccccgccgcccccgtgccgggccccgtcgccgtgctgcagctctgcgtcgaccgccgctgcctcgtcttccagatcctccacgccgactacttgcccgacgcgctgtcccgcttcctcgccgatcccaggtacaccttcgtcggcgtcggggtccgcgacgacgccgccaggctgcgggtcgggtacgggctggaggtgccgcgcgccgtggacctgcgcgccctcgccgccgacacgctagggaggcccgacctccgccgcgcggggctgcgggcgctggtgcgggaggtgatgggcgtgcagatggacaagccgcaccacgtgcgcgtcagcgcctgggacaagcgcaacctctccgaggaccagttcaagtacgcctgcaccgacgcgttcgcgtccagggaggtcggccggaggctctacacctgcaactgcgacggcgcatga
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| Protein seq | MATEIEAYYDDGSGTYLLSFDEDFLDATLTKSGGKVESWLGETYRIHRSCGHPLVVGLDVEWRPAAPVPGPVAVLQLCVDRRCLVFQILHADYLPDALSRFLADPRYTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYACTDAFASREVGRRLYTCNCDGA |
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| Function | Werner Syndrome-like exonuclease [UniProtKB/Swiss-Prot:Q84LH3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0004670 | OsLiXu_04g0004670.01 | Chr04 | 8324618 | 8325329 | - | NAM | ||
| CDS seq | atggcgaccgagattgaagcatactacgacgatggcagtggcacctacctgttgtcgttcgacgaggacttcttggacgcaacgctcaccaagtccggcggcaaggtggagtcttggctgggcgagacgtaccgcatccaccgcagctgcggccacccgctcgtcgtcggcctcgacgtggagtggcgccccgccgcccccgtgccgggccccgtcgccgtgctgcagctctgcgtcgaccgccgctgcctcgtcttccagatcctccacgccgactacttgcccgacgcgctgtcccgcttcctcgccgatcccaggtacaccttcgtcggcgtcggggtccgcgacgacgccgccaggctgcgggtcgggtacgggctggaggtgccgcgcgccgtggacctgcgcgccctcgccgccgacacgctagggaggcccgacctccgccgcgcggggctgcgggcgctggtgcgggaggtgatgggcgtgcagatggacaagccgcaccacgtgcgcgtcagcgcctgggacaagcgcaacctctccgaggaccagttcaagtacgcctgcaccgacgcgttcgcgtccagggaggtcggccggaggctctacacctgcaactgcgacggcgcatga
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| Protein seq | MATEIEAYYDDGSGTYLLSFDEDFLDATLTKSGGKVESWLGETYRIHRSCGHPLVVGLDVEWRPAAPVPGPVAVLQLCVDRRCLVFQILHADYLPDALSRFLADPRYTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYACTDAFASREVGRRLYTCNCDGA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.096867 | 0.0 | 0.087791 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0225100 | RBH | 0.580604 | 1.026218 | 1.165325 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g14810 | RBH | 0.371853 | 0.693873 | 0.284100 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0225100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0004900 | RBH | 0.0 | 0.0 | 0.707032 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0005540 | RBH | 0.0 | 0.0 | 0.710174 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005150 | RBH | 0.432832 | 0.0 | 2.715122 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0004970 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0004860 | RBH | 0.0 | 0.0 | 3.876662 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0121500 | SBH | 2.6667445 | 1.4716485 | 0.60583 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0004930 | RBH | 0.076066 | 0.0 | 0.165548 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0128000 | RBH | 2.8127755 | 0.5198385 | 15.812984 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0004730 | RBH | 0.039801 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0005050 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004800 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0016710 | RBH | 0.103377 | 0.0 | 0.124247 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0004940 | RBH | 0.0 | 0.568828 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G005020 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004830 | RBH | 0.0 | 0.0 | 3.910843 |
