Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0004250 | OGI:04023530 | 9/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:7234508-7241159 | ||||||||
| Gene Symbol | OsFbox190, Os_F0204, OsFbox191, Os_F0109 | ||||||||||
| DNA seq | agcaaaacagtgcaacataacatcatcatcgtccaacaacaaatgaaacgcatagcagacacagtagttcttagttgtcatccagaaaacataatttgacatttgcatgatagataacactattcaagcactaatttcaacacttctcaagacagtataatcaagtccgctgtccaatcttcaataaaagggaagccgaaactctaacatgaataccatgaagctgcaaacagagcactaaccacttccaaagatatttgtcttggatcacaaaatgacatggaaatgcatctttttctttcagtagtccgtgaaagggtcaaaacgagaaaaatcagatcctctcttgaagctccaaatgttacactcttcaggttctgtacttggggtgaccaggactgaacaaccagtcggccgttttgcagccctcagaacctccaccttggaacgcacctcatccatcgaagaaaaacttccagtgtcaaacaaaatgaccactatcttcagcacccgcgtagtctcgaagaaaaacttgagaaagttaacctcactccgagtgccatgaaaatcatggaaaacaatcatctggatgcttgaccgaatgcactcgatgggaccagactcctgccagaacttgaagttgagcttgccagtggtttcatcagtttttccagactgcaaattggttagatcagtcaccagagatttgttcatcagctagtgatgacagattaagatgcaaatgaatgtggatggaggtgtaatttcaccttgatgtggagcctctcaatgttgggaaagcatctgaggacattggggatcatcttggcatcgttgcggacaccgaaacgcacctccagagcaaggatcttgacgtttggtaccatattgcttgggctcacctttgtcgcggactgcaatcacagaacaaaatgcacacaattaagactgaaaatcacaaattgccatcgttatatttaagaagttgtggaattgaaacgagcaatgcaccttgatggcggttttgccaaccacaagaacgttcgctgcagggtccaagtacccaaacacgcgcagagccggcgcattcccaatcttgacgctgccggaggaggcgccgtcatgcctccatgtgccggagacgatgaggcgctcgaggcacggcgtgtccaccacggcgatctcctcgtaggaggagccgatgatctgcgcgcaccggaggctgcggctggcgaggcggatgcgcatcctgaacaggttccccttgatgcagagcgtctccaggacggggctcctggcgaggacgaaatccatgtcctgcgtgtccatgacgacgctgcagaggccgagctcgcggaggttggggaacgagacgccgcgcgggaggtcagccgtggcggggaacttccagaggccgaggtagaggcgggtgagcgtggccatgccgaagaaggtggcggggaggcccaggtcgagcggccacgggcggttcacgaggacgagctcctggatgcccttcatggcgagcacctggagccagttcgcgagcatgccctggaactcctccatgcagctggacgtgaggtggacgcaccggaacgggcccgggtgcgcgaccatgacgcgggacacggcgtgggtgacgccgcgtgccgcctcccgcgccttcttggaggagtcgtcgggagcgccgggggcggtggaggaggaggagaggaggtgggcgtcgacgaggacgagcggcgtggagcgccagagcgggcgccagcggcgggagagcgcggcggtgcgcgcggcgtccttgacggggaggcgggagacgaccctgcggaggagcgcgtcggggagggcgctgatgcggtcgacggcgtcgtgcggggcgagcgcgtagaggcgcgcggcggcggagacgggcgggtcggggagggcgtagtggatgtaggagagcacgcgcgccaccgtcccctgcacgtcgtccgggtcgtccccgcgccgccggaactcggccgccatcgcgcggcccatggggacgggcggcacgcgggtgtccatggtcgccgctcgccgccgccggggccggaagggaactagggaagggcgagccgacgagggtttggggcgtcgtgtggtgtggactgtggagtggagtggaggcgagctctggtgtgtgtaggcggagtgggaggtgctggtttgtcttgtagtggggtagtttggtcgggatgcgaggaaacctagggtttcggtggtttggttgggccaaatttcggatgcagattgctcatggcccaaactctctccgtcataaaataaatatataagatactttttacacgttattatatttatatcataataagtttatttttgatttatatgtgttaaatatttaaccgttcatcttactAaaaaaatatAaaaaaatatttagtcacATataaaatattattcatgttttatcatttaatatcagcagcataaaaaatttaaataagacaaagagtcaaacgttatatctaaaaactgaaaaatgaactttttacgagacgaacatagtaagaaatatctcatcctatcttaaattgttgataaaatttccttaagAaaatacctcgagtaacttaaaagtgtggtacctcccgatattttcttaaggatagtaaaattgccctagattgtttattttgggatggaggagtaaatcggtcactttgttcttcctaatgcaaggtacactcgactcacaattcttgctagaattttgcgatggatagattttgctagaatttatagacactgatataattcttgcgaaattcccgtaatattcatgtgttccaatgaagtccttggaaaaatgtctattttgcctatacttaaatttggggagttcaatgtagtatagaaattgtttcgaaaattatgaagtgctacgggtatatcactatgattcgtgtgataattactccctccagtcacgagaatatgttgattagggtttgttacaagtaagactttggccgtgtttagttttccctctattcccaactttccatcacatcgtatcacatcaaaactttcctacgcatataaacttccaactatttttctaaactcccaactttcttcaaacttccaacTtttttcaggaattaaacacaccctttaaaaacaaagaaaacaaatactccttccatctcaaaatataagcatttttagatcttgtcattgttttcgagatgctattttgaccaacaatttgtataaaaataaaatattttaaataacaagagtcacatattataatagtttattaatgataaatctagtaacatcaattttatatgatttattttttTAttttattgctattaatagtcaaagttaaaaattgttgacttagcactatactgaaaatgcttatattttagaacggaggaagtatataggatccaataacgctaaaccacgtgcacgtgtgccataatatacacgctatgagtACaaaagatttcgcaggtatatcctgcacaccgtggccatcttgatctgaaaatatttccggggttttcaaaaaaaaaattctagagttgcagcgacaacattagtcaacgcagcaggctttctaggccgagtttatttccaaactttttcttcaaactttcaactttttcatcacatcaaaactttcctacacatacaaactttcaacttttttgtcacatcgttccaatttcaaccaaactttcaattttggcgtgaaaacacacccctagtttcttatttcatcttctaaggacgaatggcagatataattctcctgtatgatctgcaaagaaatgtattgaaagaagatcataactgttggcattcaaagttaatcatcaaacttttgtataaattcgattcacattccacaataaagtttattcacattccagtattccccagtagaagaccaatagatagaccacgggagttctgataaaaacaaacttttcactttggactttgagacgtccactaccaatcagaactgcaactctccaagcaacagaatgcgctactagatggaacagaaacttcataaaatgtggtaaaggaaattggtaatgcagcatataaacatgaattagctttgatatctctgatttttaccaacacgaaggcacaattttaattagcagaaactgtgtgacgtcacatgctcacaggtcaatacagcattcatcttagtcaaaagagagtcctgttaaagatactaccagactgaagaactctaccgaacctcaaaacgcaaccagaaaaaagaaatgcagaagttatggaagaaaaataatccctctcacgcagaaactgcaacagaacactagcaactaccagagatgtcaaacttcgaagatcggatgatgattgtcaaagggtccacaaatctctgatgaaattgaccttacagaaatccataccaatcaggactgcaactctacaagcagtaaatgttctaccagatggaacaaaaacttcatgaaatgtggtaaaagaaattggcaagccagcgtacaaacatgaagtaattttgatatctctaattcttaccagcacaacagcaggatggcacaaatctaattagatagaactgtgtgatgtcacatgatcaatgccaggtcaatacaacattcatctgagataacatttgtcttctgctggaaagacaatactgttggagttgctacaggattgagagcactgataaatctcaaaattggaaaaaaaacagcagaagtcaaggaagcaaaacaatccctctcatttagaaactgccacagaacactaacaacttccagagatgtcaagccgagaagatcggatgatgatcgcaaaagggtccataagtgaaaaatcacatcctctctcaaagttccaattgctttctcctgcactagcatcactctcaaggaccactagtgaacaacatttactagcccattttgtggcgaacagaggcttcagtctgaaatttgcctcatctgtcgatgcaaatgttcctttgggagacacaattatcagcttcttcagcatccgcgcactctcaaggacaaatttgaggaagttaatctcaccccgcgttgctcggaaacgacgaaaaatcatcacggtaatgtgagactggatgcattcgatggcgcctgcatcctgccagaacttgaggttcagcttgccagtgagctcatcagttttccgggactacaaatgagtcaaacaatcgcacacttgaaagttagagatggataattcagccaaccaagtagaacatttttagatactcgtaactaagtagtatgtgaacgctaaatcaagcaagctgtgtctcacttcgacgtgcagagtctcaacattaggaaagcatctgaggaaactgggcagcatcttggcttcattgcggactccgaaacacacaattatgccaaggatcttcacacttggaaccatggtgcttggactagcccttgttccagcctgcaattttgccaatatgcaatgttgtaacaaaatcaaagaagaaacttcacacattggcatcgatcagcaatccacacattttgaccatctgcactgaacagattaacggtcataccttgataatagtgtcgccgatctccagcacatgggtttccagatcaaggtatccaattgcacgcagcgagggagcacggccaatctttaccagcatggaggagccacaggagtagagcatgatgaggccctcgaggcggggcgcgttgaccacgttgacatcctggtcgaaccccatcatcatcaggcaccggaggctgcggctggcgacgcggacgcgctgaagcgtgttggcctggaggcagagcgtctccagaacggggctcctggcgaggacgaagtccatgtcgtggttggtgatgccgatgagggagaagccgaggtcgcggaggttggggaagcaggcggcgcgcgggagcgcggccgtgtcggggaacttccagaggccgaggtagaggcgggtgagggtggccatgccgaagaaggtggcggggagggtgaggtcggccgggaacgggcggttgacgaggatgagctcctggatacccttgacggcgagcacctggagccagctcgcgagcagaccctggtactggtccatgaagctggaggtgaggtggaggcggcggaacgggccggggtgcgcggcgatgacgcgggacacggcgaaggtgactgcgcgggcctcctcgcgcgcggcgtcggtgtcggcgtcggacacgccggcggggaggaggtcggcgtcgacgaggacgagcggggtggagcgccaggcgtcgcgccagcgggaggagagcgcggcggtgcgcgcggcgtccttgacggggacgcgggagacgatccggcggaggagcgcgtcggggaggaggctgaggcggtcgacaccgtcgtcgtcgtcgtCgggcgggagcgcggagaggcgggcgtgggaggagaccggcgcgtcggggatggcaaagtggatgtaggagaggacggtgccgatggagctctcgacgtcctcggggacctggccgcgctgccggaactcggccatggtggcctcgtccatggggatgggtagcaccctcgtgtccat
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| CDS seq | atggacacccgcgtgccgcccgtccccatgggccgcgcgatggcggccgagttccggcggcgcggggacgacccggacgacgtgcaggggacggtggcgcgcgtgctctcctacatccactacgccctccccgacccgcccgtctccgccgccgcgcgcctctacgcgctcgccccgcacgacgccgtcgaccgcatcagcgccctccccgacgcgctcctccgcagggtcgtctcccgcctccccgtcaaggacgccgcgcgcaccgccgcgctctcccgccgctggcgcccgctctggcgctccacgccgctcgtcctcgtcgacgcccacctcctctcctcctcctccaccgcccccggcgctcccgacgactcctccaagaaggcgcgggaggcggcacgcggcgtcacccacgccgtgtcccgcgtcatggtcgcgcacccgggcccgttccggtgcgtccacctcacgtccagctgcatggaggagttccagggcatgctcgcgaactggctccaggtgctcgccatgaagggcatccaggagctcgtcctcgtgaaccgcccgtggccgctcgacctgggcctccccgccaccttcttcggcatggccacgctcacccgcctctacctcggcctctggaagttccccgccacggctgacctcccgcgcggcgtctcgttccccaacctccgcgagctcggcctctgcagcgtcgtcatggacacgcaggacatggatttcgtcctcgccaggagccccgtcctggagacgctctgcatcaaggggaacctgttcaggatgcgcatccgcctcgccagccgcagcctccggtgcgcgcagatcatcggctcctcctacgaggagatcgccgtggtggacacgccgtgcctcgagcgcctcatcgtctccggcacatggaggcatgacggcgcctcctccggcagcgtcaagattgggaatgcgccggctctgcgcgtgtttgggtacttggaccctgcagcgaacgttcttgtggttggcaaaaccgccatcaagtccgcgacaaaggtgagcccaagcaatatggtaccaaacgtcaagatccttgctctggaggtgcgtttcggtgtccgcaacgatgccaagatgatccccaatgtcctcagatgctttcccaacattgagaggctccacatcaagtctggaaaaactgatgaaaccactggcaagctcaacttcaagttctggcaggagtctggtcccatcgagtgcattcggtcaagcatccagatgattgttttccatgattttcatggcactcggagtgaggttaactttctcaagtttttcttcgagactacgcgggtgctgaagatagtggtcattttgtttgacactggaagtttttcttcgatggatgaggtgcgttccaaggtggaggttctgagggctgcaaaacggccgactggttgttcagtcctggtcaccccaagtacagaacctgaagagtgtaacatttggagcttcaagagaggatctgatttttctcgttttgaccctttcacggactactga
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| Protein seq | MDTRVPPVPMGRAMAAEFRRRGDDPDDVQGTVARVLSYIHYALPDPPVSAAARLYALAPHDAVDRISALPDALLRRVVSRLPVKDAARTAALSRRWRPLWRSTPLVLVDAHLLSSSSTAPGAPDDSSKKAREAARGVTHAVSRVMVAHPGPFRCVHLTSSCMEEFQGMLANWLQVLAMKGIQELVLVNRPWPLDLGLPATFFGMATLTRLYLGLWKFPATADLPRGVSFPNLRELGLCSVVMDTQDMDFVLARSPVLETLCIKGNLFRMRIRLASRSLRCAQIIGSSYEEIAVVDTPCLERLIVSGTWRHDGASSGSVKIGNAPALRVFGYLDPAANVLVVGKTAIKSATKVSPSNMVPNVKILALEVRFGVRNDAKMIPNVLRCFPNIERLHIKSGKTDETTGKLNFKFWQESGPIECIRSSIQMIVFHDFHGTRSEVNFLKFFFETTRVLKIVVILFDTGSFSSMDEVRSKVEVLRAAKRPTGCSVLVTPSTEPEECNIWSFKRGSDFSRFDPFTDY |
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| Function | F-box/FBD/LRR-repeat protein At1g13570 [UniProtKB/Swiss-Prot:Q9FZ70] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0004250 | OsLiXu_04g0004250.01 | Chr04 | 7234508 | 7241159 | - | NAM | ||
| CDS seq | atggacacccgcgtgccgcccgtccccatgggccgcgcgatggcggccgagttccggcggcgcggggacgacccggacgacgtgcaggggacggtggcgcgcgtgctctcctacatccactacgccctccccgacccgcccgtctccgccgccgcgcgcctctacgcgctcgccccgcacgacgccgtcgaccgcatcagcgccctccccgacgcgctcctccgcagggtcgtctcccgcctccccgtcaaggacgccgcgcgcaccgccgcgctctcccgccgctggcgcccgctctggcgctccacgccgctcgtcctcgtcgacgcccacctcctctcctcctcctccaccgcccccggcgctcccgacgactcctccaagaaggcgcgggaggcggcacgcggcgtcacccacgccgtgtcccgcgtcatggtcgcgcacccgggcccgttccggtgcgtccacctcacgtccagctgcatggaggagttccagggcatgctcgcgaactggctccaggtgctcgccatgaagggcatccaggagctcgtcctcgtgaaccgcccgtggccgctcgacctgggcctccccgccaccttcttcggcatggccacgctcacccgcctctacctcggcctctggaagttccccgccacggctgacctcccgcgcggcgtctcgttccccaacctccgcgagctcggcctctgcagcgtcgtcatggacacgcaggacatggatttcgtcctcgccaggagccccgtcctggagacgctctgcatcaaggggaacctgttcaggatgcgcatccgcctcgccagccgcagcctccggtgcgcgcagatcatcggctcctcctacgaggagatcgccgtggtggacacgccgtgcctcgagcgcctcatcgtctccggcacatggaggcatgacggcgcctcctccggcagcgtcaagattgggaatgcgccggctctgcgcgtgtttgggtacttggaccctgcagcgaacgttcttgtggttggcaaaaccgccatcaagtccgcgacaaaggtgagcccaagcaatatggtaccaaacgtcaagatccttgctctggaggtgcgtttcggtgtccgcaacgatgccaagatgatccccaatgtcctcagatgctttcccaacattgagaggctccacatcaagtctggaaaaactgatgaaaccactggcaagctcaacttcaagttctggcaggagtctggtcccatcgagtgcattcggtcaagcatccagatgattgttttccatgattttcatggcactcggagtgaggttaactttctcaagtttttcttcgagactacgcgggtgctgaagatagtggtcattttgtttgacactggaagtttttcttcgatggatgaggtgcgttccaaggtggaggttctgagggctgcaaaacggccgactggttgttcagtcctggtcaccccaagtacagaacctgaagagtgtaacatttggagcttcaagagaggatctgatttttctcgttttgaccctttcacggactactga
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| Protein seq | MDTRVPPVPMGRAMAAEFRRRGDDPDDVQGTVARVLSYIHYALPDPPVSAAARLYALAPHDAVDRISALPDALLRRVVSRLPVKDAARTAALSRRWRPLWRSTPLVLVDAHLLSSSSTAPGAPDDSSKKAREAARGVTHAVSRVMVAHPGPFRCVHLTSSCMEEFQGMLANWLQVLAMKGIQELVLVNRPWPLDLGLPATFFGMATLTRLYLGLWKFPATADLPRGVSFPNLRELGLCSVVMDTQDMDFVLARSPVLETLCIKGNLFRMRIRLASRSLRCAQIIGSSYEEIAVVDTPCLERLIVSGTWRHDGASSGSVKIGNAPALRVFGYLDPAANVLVVGKTAIKSATKVSPSNMVPNVKILALEVRFGVRNDAKMIPNVLRCFPNIERLHIKSGKTDETTGKLNFKFWQESGPIECIRSSIQMIVFHDFHGTRSEVNFLKFFFETTRVLKIVVILFDTGSFSSMDEVRSKVEVLRAAKRPTGCSVLVTPSTEPEECNIWSFKRGSDFSRFDPFTDY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0208500 | RBH | 0.0 | 0.0 | 2.642630 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g13160 | RBH | 0.0 | 0.0 | 0.657961 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0208500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0004290 | RBH | 0.000000 | 0.0 | 0.765837 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0004950 | RBH | 0.0 | 0.000000 | 0.306197 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0004490 | RBH | 0.083161 | 0.0 | 1.067521 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0004550 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0004440 | RBH | 0.000000 | 0.000000 | 0.387737 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0106100 | RBH | 0.005561 | 0.004242 | 0.426804 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0004520 | RBH | 0.0 | 0.0 | 0.134636 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0113800 | RBH | 0.008905 | 0.010363 | 1.1346275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0004290 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0004620 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004380 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0016210 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0004500 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G004670 | RBH | 0.0 | 0.0 | 0.574024 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004400 | RBH | 0.0 | 0.0 | 0.368590 |
