Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0004040 | OGI:04022450 | 8/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:7052037-7054466 | ||||||||
| Gene Symbol | RLCK135, OsRLCK135, OsLecRK3, LecRK3 | ||||||||||
| DNA seq | tcatgcaagtgaactgatataggaggaaggatcaggaggcgttggtatttgtactgctccatcaagcatttgtgtcaccttaagcatggttggccgcatcgatggctcctcctggaggcaccacagtgccacagcaacgaagcgctccaccttttttatgttgaagattgcctcgtcatcgcccgctaccagcaagtcaatcccacacttgtagcaatcatttgcccaataagttagtattgtctgctcttcatctaggacttctaattccacattcttcctgcagcacacaagctcaagcaaaatcacccaaagctataaacgtcgaccttagaagtaatccctatgttcttgaaccactcaggtgcaacatatcctcgagtaccccgaatgccggtgtttgtttgtgtctgattcaccggaagaagctttgctaggccaaaatctgaaatctttgctacaaaattatcatcgagaaggatattctgtggtttcatatcgcagtggatgatttgtttattacactcctcatgtaggtagagcagtcctcgtgccaccccaagtgcgacttgaacacggaggctccaatgtggatgggtatcgctgaagaggaatgtattgagtgatccattgctcatgaactcatacactaacagcctttcagttccctcgttgcaaaaaccaagcagtctaactaagttcctgtgaaatgtctgcccaatggtttggacttccaccaagaactccttttgtgcttcctgctgaagcttttcgattttcttgaccgcgatgttagtcccaaatcatcttgcagctgtcctttgtagacaacaccagaggctcctgtgccaagtacttcttggaaaccaccggttgccttttccagctcgctgtaagtgaaaatctttggaggtaatccagagttattggacggttgcgataactggattttcttcctcgaggtgatactacaataagtaccaaaaagcataacagagattaggagaaagttcaccaatacagagcttccaaaaagtaatgaactcccaagaatccaatactttttgtcctccttccatttgcttgagccgctgctgaacacggatggtgaattggtgctcctaggcaccttaataagaactgtcctcggtacattgacatccattttaccgttcgacaaagggaaccttttcttccaacaagtgcttgaagctttatcgaacacagctacggcgagaacaatcaatcacacacagccttcggcattcggtctgatctatgggattgtattgctcatagtcagatagaggccaatcaacgcgatcgattggtgccatgtcatactgcaacattgctgtcgtctcatccagatcacagttttgtggctcaaaatctggcctgcagcctttgtatttccttttatcatcgatgaacttataattctgtgggcataaacaacttgtcgtgttcttggtgccatcaatggtgcagtaactgttaaagccgcatgctccactacccaccattgtttgtattgactggcagatgttttctggaagtacatcgactgcagtccattgctctggccataagggcctggcatgtatgttttttgggtaaacatattgccggaatacaccatctgtgtcaagggtagcacgatggaagaaatcacccatagaatccacccctgcagaagtgatatttacctgtgaaccattaattatagtgaagtatatccttccagtttcattgaacactagctgtgagccattgtccactgtgttactagcccaatatggatcgtataagtatccagaaggtacagcatctggatacataacaagattaccatctcgttgaacttttagttgaaatcggccattggaatagtctgtggcgaggagacggctgtggagtgccgtccccagtgaaagcacttgtgtgggtaggatggtatcagaagggtcaccaaaggactcccactttgttgcaccatcggtgcctaaaagcctgaaattcccggtgtcgagcattctagcatagcccacatcagtgacttgtggattccatacctcattgccagatggatcgcgaagagagagtgctccatcagcgagcttgaggacagagccagattggacttgtaccggtattgtatcatctttcccattggagctagtccttgcgtaccagacgacggtcttgtcagcgatcttgttgaaccagacggcgagcaggtaagagagaggagtttccatctaccgcccgaaaaccgaatgcaaaatcagcagagggcgagatccatgagttgtttaccccctggggtgtcaaagaggagcctatactgatgtttagctgagcttgggcagatttcgtgcagtatagtagcaagagttgcaggatgggcaagaacaggagatgagccat
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| CDS seq | atggctcatctcctgttcttgcccatcctgcaactcttgctactatactgcacgaaatctgcccaagctcagctaaacatcagtataggctcctctttgacaccccaggggatggaaactcctctctcttacctgctcgccgtctggttcaacaagatcgctgacaagaccgtcgtctggtacgcaaggactagctccaatgggaaagatgatacaataccggtacaagtccaatctggctctgtcctcaagctcgctgatggagcactctctcttcgcgatccatctggcaatgaggtatggaatccacaagtcactgatgtgggctatgctagaatgctcgacaccgggaatttcaggcttttaggcaccgatggtgcaacaaagtgggagtcctttggtgacccttctgataccatcctacccacacaagtgctttcactggggacggcactccacagccgtctcctcgccacagactattccaatggccgatttcaactaaaagttcaacgagatggtaatcttgttatgtatccagatgctgtaccttctggatacttatacgatccatattgggctagtaacacagtggacaatggctcacagctagtgttcaatgaaactggaaggatatacttcactataattaatggttcacaggtaaatatcacttctgcaggggtggattctatgggtgatttcttccatcgtgctacccttgacacagatggtgtattccggcaatatgtttacccaaaaaacatacatgccaggcccttatggccagagcaatggactgcagtcgatgtacttccagaaaacatctgccagtcaatacaaacaatggtgggtagtggagcatgcggctttaacagttactgcaccattgatggcaccaagaacacgacaagttgtttatgcccacagaattataagttcatcgatgataaaaggaaatacaaaggctgcaggccagattttgagccacaaaactgtgatctggatgagacgacagcaatgttgcagtatgacatggcaccaatcgatcgcgttgattggcctctatctgactatgagcaatacaatcccatagatcagaccgaatgccgaaggcttatcacctcgaggaagaaaatccagttatcgcaaccgtccaataactctggattacctccaaagattttcacttacagcgagctggaaaaggcaaccggtggtttccaagaagtacttggcacaggagcctctggtgttgtctacaaaggacagctgcaagatgatttgggactaacatcgcggaagaatgtggaattagaagtcctagatgaagagcagacaatactaacttattgggcaaatgattgctacaagtgtgggattgacttgctggtagcgggcgatgacgaggcaatcttcaacataaaaaaggtggagcgcttcgttgctgtggcactgtggtgcctccaggaggagccatcgatgcggccaaccatgcttaaggtgacacaaatgcttgatggagcagtacaaataccaacgcctcctgatccttcctcctatatcagttcacttgcatga
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| Protein seq | MAHLLFLPILQLLLLYCTKSAQAQLNISIGSSLTPQGMETPLSYLLAVWFNKIADKTVVWYARTSSNGKDDTIPVQVQSGSVLKLADGALSLRDPSGNEVWNPQVTDVGYARMLDTGNFRLLGTDGATKWESFGDPSDTILPTQVLSLGTALHSRLLATDYSNGRFQLKVQRDGNLVMYPDAVPSGYLYDPYWASNTVDNGSQLVFNETGRIYFTIINGSQVNITSAGVDSMGDFFHRATLDTDGVFRQYVYPKNIHARPLWPEQWTAVDVLPENICQSIQTMVGSGACGFNSYCTIDGTKNTTSCLCPQNYKFIDDKRKYKGCRPDFEPQNCDLDETTAMLQYDMAPIDRVDWPLSDYEQYNPIDQTECRRLITSRKKIQLSQPSNNSGLPPKIFTYSELEKATGGFQEVLGTGASGVVYKGQLQDDLGLTSRKNVELEVLDEEQTILTYWANDCYKCGIDLLVAGDDEAIFNIKKVERFVAVALWCLQEEPSMRPTMLKVTQMLDGAVQIPTPPDPSSYISSLA |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 [UniProtKB/Swiss-Prot:Q0JEU6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0004040 | OsLiXu_04g0004040.01 | Chr04 | 7052037 | 7054466 | - | NAM | ||
| CDS seq | atggctcatctcctgttcttgcccatcctgcaactcttgctactatactgcacgaaatctgcccaagctcagctaaacatcagtataggctcctctttgacaccccaggggatggaaactcctctctcttacctgctcgccgtctggttcaacaagatcgctgacaagaccgtcgtctggtacgcaaggactagctccaatgggaaagatgatacaataccggtacaagtccaatctggctctgtcctcaagctcgctgatggagcactctctcttcgcgatccatctggcaatgaggtatggaatccacaagtcactgatgtgggctatgctagaatgctcgacaccgggaatttcaggcttttaggcaccgatggtgcaacaaagtgggagtcctttggtgacccttctgataccatcctacccacacaagtgctttcactggggacggcactccacagccgtctcctcgccacagactattccaatggccgatttcaactaaaagttcaacgagatggtaatcttgttatgtatccagatgctgtaccttctggatacttatacgatccatattgggctagtaacacagtggacaatggctcacagctagtgttcaatgaaactggaaggatatacttcactataattaatggttcacaggtaaatatcacttctgcaggggtggattctatgggtgatttcttccatcgtgctacccttgacacagatggtgtattccggcaatatgtttacccaaaaaacatacatgccaggcccttatggccagagcaatggactgcagtcgatgtacttccagaaaacatctgccagtcaatacaaacaatggtgggtagtggagcatgcggctttaacagttactgcaccattgatggcaccaagaacacgacaagttgtttatgcccacagaattataagttcatcgatgataaaaggaaatacaaaggctgcaggccagattttgagccacaaaactgtgatctggatgagacgacagcaatgttgcagtatgacatggcaccaatcgatcgcgttgattggcctctatctgactatgagcaatacaatcccatagatcagaccgaatgccgaaggcttatcacctcgaggaagaaaatccagttatcgcaaccgtccaataactctggattacctccaaagattttcacttacagcgagctggaaaaggcaaccggtggtttccaagaagtacttggcacaggagcctctggtgttgtctacaaaggacagctgcaagatgatttgggactaacatcgcggaagaatgtggaattagaagtcctagatgaagagcagacaatactaacttattgggcaaatgattgctacaagtgtgggattgacttgctggtagcgggcgatgacgaggcaatcttcaacataaaaaaggtggagcgcttcgttgctgtggcactgtggtgcctccaggaggagccatcgatgcggccaaccatgcttaaggtgacacaaatgcttgatggagcagtacaaataccaacgcctcctgatccttcctcctatatcagttcacttgcatga
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| Protein seq | MAHLLFLPILQLLLLYCTKSAQAQLNISIGSSLTPQGMETPLSYLLAVWFNKIADKTVVWYARTSSNGKDDTIPVQVQSGSVLKLADGALSLRDPSGNEVWNPQVTDVGYARMLDTGNFRLLGTDGATKWESFGDPSDTILPTQVLSLGTALHSRLLATDYSNGRFQLKVQRDGNLVMYPDAVPSGYLYDPYWASNTVDNGSQLVFNETGRIYFTIINGSQVNITSAGVDSMGDFFHRATLDTDGVFRQYVYPKNIHARPLWPEQWTAVDVLPENICQSIQTMVGSGACGFNSYCTIDGTKNTTSCLCPQNYKFIDDKRKYKGCRPDFEPQNCDLDETTAMLQYDMAPIDRVDWPLSDYEQYNPIDQTECRRLITSRKKIQLSQPSNNSGLPPKIFTYSELEKATGGFQEVLGTGASGVVYKGQLQDDLGLTSRKNVELEVLDEEQTILTYWANDCYKCGIDLLVAGDDEAIFNIKKVERFVAVALWCLQEEPSMRPTMLKVTQMLDGAVQIPTPPDPSSYISSLA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0202500 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g12580 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0202500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0004110 | SBH | 0.0 | 1.078562 | 1.091011 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0004630 | SBH | 0.065914 | 0.0 | 1.154559 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0004150 | SBH | 0.0 | 0.0 | 0.232265 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0004220 | SBH | 0.035032 | 0.011699 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0004120 | SBH | 1.764795 | 1.247277 | 2.858693 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0102600 | SBH | 0.908577 | 3.178659 | 1.9770705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0004250 | SBH | 0.000000 | 0.095437 | 0.171531 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0107400 | RBH | 1.3508365 | 0.2893325 | 3.432165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0004060 | SBH | 0.000000 | 0.021865 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0004300 | SBH | 0.144705 | 2.372885 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004140 | SBH | 0.467223 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0016050 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0004150 | SBH | 0.046678 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G004410 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004140 | RBH | 0.195094 | 0.0 | 0.0 |
