Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0002280 | OGI:04014140 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:4270604-4272823 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagcgccctcgtttagcatctttcctcctcctccagttatcctcttcaactcccctgccggttttgccgacgaggaagaggccgacgtgctcggcgacgagccacaggacggtggtgagctcgccgccctggctcagctgcttggcgtgcgcctccttgctgcaccggtagctcgcgtagaacaccatgtccacccacacctccaggatcacctgcaccatgtccgccttcccctccctctccaggtccagcagtttcatggcgagctccacgccgcgagacaggtacttgtttagcgcaactccgccgccgccgccgccgccggtgtcgtcgtcccgtccgcgccgccattgatcgatcagcatcttggcgagctcctcctcctcccagctcctcatgtcgctgattcttggagaaactcgccaccggttgtgccgccggaagaagaatttcctcggcacggcggcggcggcggcggcggcctggtgtttggaccaaacccgggccagatcgtcgcaggtgagctcgaacagcttgcgggtgacgagtccggggagcatgtcggggcggacggcgaggaggtacatcatgtagtcggacagcgtcctgatcgtcctcaccagccgtgctacggcggcggcggcggttctcccggacagcaagaggtagatctcggtggcgacgtgccacgtgaggatgcccagctggagctcgtcgccgaggctccaccggagttcgccgagaaggttgcggccctgcagcgcgagctggcccctcttcgtcctcaggttcgccgccatcttcctcaggtccatgtccgccgcctccctgttcatcctcgccctcaggtcgagcagctgctgcctcactcgccggaagaccacctccttcacctcagctgggatcaccatcgtgttcttctccgagtatcgcgcgcattccttgtcccatgaccgatcttggctctCccccctgtcgctgccggcgccggtgatgatgagctgcaacacgctgagctggcccatcttgccgcaccatttccggtgagcttgcgagttggcgatccggccgacggaggccatcgcgtgatggaaccggagccaccggctcgcgcacagggcttcatggcgaatccagccgtgtcggaggccacggtgcagcaagaatcccgtccatgacgagccgacggctctgagcagcgacgccgtctcgaggaggaaggtggcgacgagcaggaggcgggtgatgacgacgtcggatcgccggtggtggccgcctacgttgctgagctcgacgaggaccatcgagacggcggtgaacaccggcgacacggcgcggatggcgtagccgtgccaggtgtagatgacggcggccttggtgtagaggaagtcgtacatgagcgagagctccatctccatcaccctgaacagctgcggccactcgagctggaagagggtctccttggtgtcggccgccgccgccgcgtcgtaggtgttcgacgccgtctccaccgacgagtccaccatggagttcttgcagatgtggaacagcgcgtgagccttcatcacaagggcgccatcgtcgtctccggcaaacacgagcttggtggaacgccggccgccaccttccgtgcggtggcgctgctgccggcggcgctgcctctccacggagctccggacgctggccaggttggcgcggcggagcgccatcgtcttctcggtgtacttggccacgccgacgaagagcatcagccaggacgccgagatcaaggcccagctgccatgggtggacttgtagacgatgtacaccgctccggcgacgcggaggacgagctcgagcacgtagcgcgcggacagctggttgtcctcgagctcgtaggcggtgatgctgtcgggcccgccgaggtggagcaggaagaagggcgcccagaacgcgacgaggcggcgcttgccggccgtgccgctgacggagaggtgccccagcgcggtggtcgccacgaagtcggcgccgacgtagaagagccagatgacgcggcgcagcgcggcggaggcgctgcgccaccggaacccggcggtgacggtgagcaccagctgcgccgcgaagctgacgccgagcaggatctccatcgaccagctgctccagaggttgcccacggcgccgccgccgagcaacagcgtgtgccaaatgatatccaacacccatctgccgtcccccgccat
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| CDS seq | atggcgggggacggcagatgggtgttggatatcatttggcacacgctgttgctcggcggcggcgccgtgggcaacctctggagcagctggtcgatggagatcctgctcggcgtcagcttcgcggcgcagctggtgctcaccgtcaccgccgggttccggtggcgcagcgcctccgccgcgctgcgccgcgtcatctggctcttctacgtcggcgccgacttcctcgtgtttgccggagacgacgatggcgcccttgtgatgaaggctcacgcgctgttccacatctgcaagaactccatggtggactcgtcggtggagacggcgtcgaacacctacgacgcggcggcggcggccgacaccaaggagaccctcttccagctcgagtggccgcagctgttcagggtgatggagatggagctctcgctcatgtacgacttcctctacaccaaggccgccgtcatctacacctggcacggctacgccatccgcgccgtgtcgccggtgttcaccgccgtctcgatggtcctcgtcgagctcagcaacgtaggcggccaccaccggcgatccgacgtcgtcatcacccgcctcctgctcgtcgccaccttcctcctcgagacggcgtcgctgctcagagccgtcggctcgtcatggacgggattcttgctgcaccgtggcctccgacacggctggattcgccatgaagccctgtgcgcgagccggtggctccggttccatcacgcgatggcctccgtcggccggatcgccaactcgcaagctcaccggaaatggtgcggcaagatgggccagctcagcgtgttgcagctcatcatcaccggcgccggcagcgacagggggGagagccaagatcggtcatgggacaaggaatgcgcgcgatactcggagaagaacacgatggtgatcccagctgaggtgaaggaggtggtcttccggcgagtgaggcagcagctgctcgacctgagggcgaggatgaacagggaggcggcggacatggacctgaggaagatggcggcgaacctgaggacgaagaggggccagctcgcgctgcagggccgcaaccttctcggcgaactccggtggagcctcggcgacgagctccagctgggcatcctcacgtggcacgtcgccaccgagatctacctcttgctgtccgggagaaccgccgccgccgccgtagcacggctggtgaggacgatcaggacgctgtccgactacatgatgtacctcctcgccgtccgccccgacatgctccccggactcgtcacccgcaagctgttcgagctcacctgcgacgatctggcccgggtttggtccaaacaccaggccgccgccgccgccgccgccgtgccgaggaaattcttcttccggcggcacaaccggtggcgagtttctccaagaatcagcgacatgaggagctgggaggaggaggagctcgccaagatgctgatcgatcaatggcggcgcggacgggacgacgacaccggcggcggcggcggcggcggagttgcgctaaacaagtacctgtctcgcggcgtggagctcgccatgaaactgctggacctggagagggaggggaaggcggacatggtgcaggtgatcctggaggtgtgggtggacatggtgttctacgcgagctaccggtgcagcaaggaggcgcacgccaagcagctgagccagggcggcgagctcaccaccgtcctgtggctcgtcgccgagcacgtcggcctcttcctcgtcggcaaaaccggcaggggagttgaagaggataactggaggaggaggaaagatgctaaacgagggcgctga
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| Protein seq | MAGDGRWVLDIIWHTLLLGGGAVGNLWSSWSMEILLGVSFAAQLVLTVTAGFRWRSASAALRRVIWLFYVGADFLVFAGDDDGALVMKAHALFHICKNSMVDSSVETASNTYDAAAAADTKETLFQLEWPQLFRVMEMELSLMYDFLYTKAAVIYTWHGYAIRAVSPVFTAVSMVLVELSNVGGHHRRSDVVITRLLLVATFLLETASLLRAVGSSWTGFLLHRGLRHGWIRHEALCASRWLRFHHAMASVGRIANSQAHRKWCGKMGQLSVLQLIITGAGSDRGESQDRSWDKECARYSEKNTMVIPAEVKEVVFRRVRQQLLDLRARMNREAADMDLRKMAANLRTKRGQLALQGRNLLGELRWSLGDELQLGILTWHVATEIYLLLSGRTAAAAVARLVRTIRTLSDYMMYLLAVRPDMLPGLVTRKLFELTCDDLARVWSKHQAAAAAAAVPRKFFFRRHNRWRVSPRISDMRSWEEEELAKMLIDQWRRGRDDDTGGGGGGGVALNKYLSRGVELAMKLLDLEREGKADMVQVILEVWVDMVFYASYRCSKEAHAKQLSQGGELTTVLWLVAEHVGLFLVGKTGRGVEEDNWRRRKDAKRGR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0002280 | OsLiXu_04g0002280.01 | Chr04 | 4270604 | 4272823 | - | NAM | ||
| CDS seq | atggcgggggacggcagatgggtgttggatatcatttggcacacgctgttgctcggcggcggcgccgtgggcaacctctggagcagctggtcgatggagatcctgctcggcgtcagcttcgcggcgcagctggtgctcaccgtcaccgccgggttccggtggcgcagcgcctccgccgcgctgcgccgcgtcatctggctcttctacgtcggcgccgacttcctcgtgtttgccggagacgacgatggcgcccttgtgatgaaggctcacgcgctgttccacatctgcaagaactccatggtggactcgtcggtggagacggcgtcgaacacctacgacgcggcggcggcggccgacaccaaggagaccctcttccagctcgagtggccgcagctgttcagggtgatggagatggagctctcgctcatgtacgacttcctctacaccaaggccgccgtcatctacacctggcacggctacgccatccgcgccgtgtcgccggtgttcaccgccgtctcgatggtcctcgtcgagctcagcaacgtaggcggccaccaccggcgatccgacgtcgtcatcacccgcctcctgctcgtcgccaccttcctcctcgagacggcgtcgctgctcagagccgtcggctcgtcatggacgggattcttgctgcaccgtggcctccgacacggctggattcgccatgaagccctgtgcgcgagccggtggctccggttccatcacgcgatggcctccgtcggccggatcgccaactcgcaagctcaccggaaatggtgcggcaagatgggccagctcagcgtgttgcagctcatcatcaccggcgccggcagcgacagggggGagagccaagatcggtcatgggacaaggaatgcgcgcgatactcggagaagaacacgatggtgatcccagctgaggtgaaggaggtggtcttccggcgagtgaggcagcagctgctcgacctgagggcgaggatgaacagggaggcggcggacatggacctgaggaagatggcggcgaacctgaggacgaagaggggccagctcgcgctgcagggccgcaaccttctcggcgaactccggtggagcctcggcgacgagctccagctgggcatcctcacgtggcacgtcgccaccgagatctacctcttgctgtccgggagaaccgccgccgccgccgtagcacggctggtgaggacgatcaggacgctgtccgactacatgatgtacctcctcgccgtccgccccgacatgctccccggactcgtcacccgcaagctgttcgagctcacctgcgacgatctggcccgggtttggtccaaacaccaggccgccgccgccgccgccgccgtgccgaggaaattcttcttccggcggcacaaccggtggcgagtttctccaagaatcagcgacatgaggagctgggaggaggaggagctcgccaagatgctgatcgatcaatggcggcgcggacgggacgacgacaccggcggcggcggcggcggcggagttgcgctaaacaagtacctgtctcgcggcgtggagctcgccatgaaactgctggacctggagagggaggggaaggcggacatggtgcaggtgatcctggaggtgtgggtggacatggtgttctacgcgagctaccggtgcagcaaggaggcgcacgccaagcagctgagccagggcggcgagctcaccaccgtcctgtggctcgtcgccgagcacgtcggcctcttcctcgtcggcaaaaccggcaggggagttgaagaggataactggaggaggaggaaagatgctaaacgagggcgctga
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| Protein seq | MAGDGRWVLDIIWHTLLLGGGAVGNLWSSWSMEILLGVSFAAQLVLTVTAGFRWRSASAALRRVIWLFYVGADFLVFAGDDDGALVMKAHALFHICKNSMVDSSVETASNTYDAAAAADTKETLFQLEWPQLFRVMEMELSLMYDFLYTKAAVIYTWHGYAIRAVSPVFTAVSMVLVELSNVGGHHRRSDVVITRLLLVATFLLETASLLRAVGSSWTGFLLHRGLRHGWIRHEALCASRWLRFHHAMASVGRIANSQAHRKWCGKMGQLSVLQLIITGAGSDRGESQDRSWDKECARYSEKNTMVIPAEVKEVVFRRVRQQLLDLRARMNREAADMDLRKMAANLRTKRGQLALQGRNLLGELRWSLGDELQLGILTWHVATEIYLLLSGRTAAAAVARLVRTIRTLSDYMMYLLAVRPDMLPGLVTRKLFELTCDDLARVWSKHQAAAAAAAVPRKFFFRRHNRWRVSPRISDMRSWEEEELAKMLIDQWRRGRDDDTGGGGGGGVALNKYLSRGVELAMKLLDLEREGKADMVQVILEVWVDMVFYASYRCSKEAHAKQLSQGGELTTVLWLVAEHVGLFLVGKTGRGVEEDNWRRRKDAKRGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.259469 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0163800 | SBH | 1.019264 | 0.614871 | 1.978794 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g08200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0163800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0002290 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0002610 | RBH | 0.0 | 2.888163 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0002340 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0002510 | RBH | 0.0 | 0.032392 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0002360 | RBH | 0.0 | 6.226436 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0068300 | RBH | 0 | 0.152379 | 0.0057235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0002550 | RBH | 0.0 | 0.144698 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0066800 | RBH | 0.0077445 | 0 | 0.0005285 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0002370 | RBH | 0.0 | 0.025011 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0002590 | RBH | 0.0 | 2.149799 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0002410 | RBH | 0.0 | 4.255384 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002270 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0002380 | RBH | 0.0 | 3.264286 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G002630 | RBH | 0.0 | 0.399857 | 0.160055 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002440 | RBH | 0.0 | 0.000000 | 0.0 |
