Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0001780 | OGI:04007720 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:2931235-2933905 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caattaactacaagctagtcgatcaatttacacaggtacacacagaggagagatgaaaagcatcgatcctagctagttgaaggagaagagtttaacaacatcaatctgaggacgctgtagatgtatctcagtaggagtagggacagcagtgagacgaatgcctattctgtcgagcgtctgacacgaagtacacgagcgtgttcgacaaggatccaaacgacggtggtgagctcaccaccacgggcgagctgcttggcatggcaatccctagaacatcgggtggatacgttaatcagctgacgtacccacgccctgaagatggcatccgtgacgacctccgtcggcatcaatgcgtttggtgtatgaccgtcgtgctcttcgacccatctcatcaaatccggaaactgccggtagaattttctcctgagtgtaatgtcaatccttctcatatgatatcgatgaaactgttccaatgtcatgcttagcagaaaaatggctagtttagttccctcagacagaatattactcttgttgtaaagatcagtagtcctcccagatcttgcctgctgaggatccagttccaagtaaaacaggatgttggcaagacatgtttctctggacggcggtgtggagcctctggaaaagtcaggattatttttattatccttccatattttggtaagagcatcccggacagaatcgtacaggctgctgaggatgaggccgggtagcatgctaggtcgcactgcgacgaggaacatcatgtagttggacaacgccttcattgcctgcacctgctgttgtgatgatgcttcagttagatcctgttccagccatgagagaacgaggtccgtggcgatgtgcaagataagaatggtctcttgtaaatcaggagtaaaatccagggcaaggtttatttcctgattaaaatgagtaccggatagagctacttgcggctgctctatcaaaacatttcgttccagttttgggaaggcaaatctaatttgttcccaaatacggcggaacaatggctccttaatcacacccgttgaaatatcctcgcccatcaagtagtggtattcgtactccatccaatgactagtggagaaccccaaatatttgttttccgataccttcttcaacatatagctcacgcaggtgctggtcgtctcccccgcatcgtcgtcacgagtgcagcctcggagcaggttgtactgaccaatggttcctgaccacatcctgtagctaattggctccttgttggcaataaagcgaaccagattgaaagaaacgatgacaccacggatcacccgccatttcccggagcacaagagtgcatgatgaagccagtggcggggcctatcattgaggaacgaataggtccatgtcgacgccactaccctgagaagccaattgatatccagaatgaatgtgccggctagaatggcgtaggtgattacgacctcaccatgcgcctgcccttccttgctgtggaaccaatacagcataaaagcagcggctccggcgatcggagataagaaacggatggcgtagccaaaacatgtgtggacaatggtcgccttggtgtagatgatgtcgtacatgagggagagctccatagtgaccaccttgtacaacatatcatcccaggtggcaggcagtgcttcttgttgtctgccggcatcatcatcatcatcatcattattcatgtccaagtagtcgatgaaggcgttcttggtgatatagaacgtatcatgagcaatgagcaggatctgctcatcatcatcatccggcgtactgcctccacgcatagcactctgcaggctgcttcgtcttcttggccggctcttcgcctcctcctctttactgaagcttcgcatattctccaggtttccgagccacagcgcccaaagtgccccctccaaatacctggcgatggccatcaagcagatgaccgaggagacccacagcatggggtcgtcattgctggagaaaatattcttgtacaagatagcgaacggtgacactggtccaatcagctgaagaaacacactcacaacctgtcgcattgacatgacggtgtcctccaacgcgtaggcggtgatgttgtccggcatcccggcgtgcagcagcatgaacgccacccacagcgtcctcagctgctcctgctcggccgtgctgccgacggacagcttgcccagcgccgcagtcggggcccaacgagctacctggttggtcagccacagcacaagcgtccctaagcccgtcgcagtatgtcggcgaacatcggcaaacaagacgaggcccagatgtgccgctgagctgatgattagaaaatccttggtcgttacaaaattccatccaggcatcgttcgttcgtcgtcgcccctgctaatcaatgcgtatgttgtatcttattttaagtcgagcaggatgaaagattattatttacgtatgtacataaacaagctgcaggtagataaactagaccaaataatacgtaccgctccgctcttcaaactgatcaatttgctgatggagttggagttggagtatcccccacttaatctgaattgatatcccaattaatttggtagaacaccagtggtagaacagcaacagacaagaggatgcatgtaatttggtgccttggtggtgtttaacagcgagt
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| CDS seq | atgcctggatggaattttgtaacgaccaaggattttctaatcatcagctcagcggcacatctgggcctcgtcttgtttgccgatgttcgccgacatactgcgacgggcttagggacgcttgtgctgtggctgaccaaccaggtagctcgttgggccccgactgcggcgctgggcaagctgtccgtcggcagcacggccgagcaggagcagctgaggacgctgtgggtggcgttcatgctgctgcacgccgggatgccggacaacatcaccgcctacgcgttggaggacaccgtcatgtcaatgcgacaggttgtgagtgtgtttcttcagctgattggaccagtgtcaccgttcgctatcttgtacaagaatattttctccagcaatgacgaccccatgctgtgggtctcctcggtcatctgcttgatggccatcgccaggtatttggagggggcactttgggcgctgtggctcggaaacctggagaatatgcgaagcttcagtaaagaggaggaggcgaagagccggccaagaagacgaagcagcctgcagagtgctatgcgtggaggcagtacgccggatgatgatgatgagcagatcctgctcattgctcatgatacgttctatatcaccaagaacgccttcatcgactacttggacatgaataatgatgatgatgatgatgatgccggcagacaacaagaagcactgcctgccacctgggatgatatgttgtacaaggtggtcactatggagctctccctcatgtacgacatcatctacaccaaggcgaccattgtccacacatgttttggctacgccatccgtttcttatctccgatcgccggagccgctgcttttatgctgtattggttccacagcaaggaagggcaggcgcatggtgaggtcgtaatcacctacgccattctagccggcacattcattctggatatcaattggcttctcagggtagtggcgtcgacatggacctattcgttcctcaatgataggccccgccactggcttcatcatgcactcttgtgctccgggaaatggcgggtgatccgtggtgtcatcgtttctttcaatctggttcgctttattgccaacaaggagccaattagctacaggatgtggtcaggaaccattggtcagtacaacctgctccgaggctgcactcgtgacgacgatgcgggggagacgaccagcacctgcgtgagctatatgttgaagaaggtatcggaaaacaaatatttggggttctccactagtcattggatggagtacgaataccactacttgatgggcgaggatatttcaacgggtgtgattaaggagccattgttccgccgtatttgggaacaaattagatttgccttcccaaaactggaacgaaatgttttgatagagcagccgcaagtagctctatccggtactcattttaatcaggaaataaaccttgccctggattttactcctgatttacaagagaccattcttatcttgcacatcgccacggacctcgttctctcatggctggaacaggatctaactgaagcatcatcacaacagcaggtgcaggcaatgaaggcgttgtccaactacatgatgttcctcgtcgcagtgcgacctagcatgctacccggcctcatcctcagcagcctgtacgattctgtccgggatgctcttaccaaaatatggaaggataataaaaataatcctgacttttccagaggctccacaccgccgtccagagaaacatgtcttgccaacatcctgttttacttggaactggatcctcagcaggcaagatctgggaggactactgatctttacaacaagagtaatattctgtctgagggaactaaactagccatttttctgctaagcatgacattggaacagtttcatcgatatcatatgagaaggattgacattacactcaggagaaaattctaccggcagtttccggatttgatgagatgggtcgaagagcacgacggtcatacaccaaacgcattgatgccgacggaggtcgtcacggatgccatcttcagggcgtgggtacgtcagctgattaacgtatccacccgatgttctagggattgccatgccaagcagctcgcccgtggtggtgagctcaccaccgtcgtttggatccttgtcgaacacgctcgtgtacttcgtgtcagacgctcgacagaatag
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| Protein seq | MPGWNFVTTKDFLIISSAAHLGLVLFADVRRHTATGLGTLVLWLTNQVARWAPTAALGKLSVGSTAEQEQLRTLWVAFMLLHAGMPDNITAYALEDTVMSMRQVVSVFLQLIGPVSPFAILYKNIFSSNDDPMLWVSSVICLMAIARYLEGALWALWLGNLENMRSFSKEEEAKSRPRRRSSLQSAMRGGSTPDDDDEQILLIAHDTFYITKNAFIDYLDMNNDDDDDDAGRQQEALPATWDDMLYKVVTMELSLMYDIIYTKATIVHTCFGYAIRFLSPIAGAAAFMLYWFHSKEGQAHGEVVITYAILAGTFILDINWLLRVVASTWTYSFLNDRPRHWLHHALLCSGKWRVIRGVIVSFNLVRFIANKEPISYRMWSGTIGQYNLLRGCTRDDDAGETTSTCVSYMLKKVSENKYLGFSTSHWMEYEYHYLMGEDISTGVIKEPLFRRIWEQIRFAFPKLERNVLIEQPQVALSGTHFNQEINLALDFTPDLQETILILHIATDLVLSWLEQDLTEASSQQQVQAMKALSNYMMFLVAVRPSMLPGLILSSLYDSVRDALTKIWKDNKNNPDFSRGSTPPSRETCLANILFYLELDPQQARSGRTTDLYNKSNILSEGTKLAIFLLSMTLEQFHRYHMRRIDITLRRKFYRQFPDLMRWVEEHDGHTPNALMPTEVVTDAIFRAWVRQLINVSTRCSRDCHAKQLARGGELTTVVWILVEHARVLRVRRSTE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0001780 | OsLiXu_04g0001780.01 | Chr04 | 2931235 | 2933905 | - | NAM | ||
| CDS seq | atgcctggatggaattttgtaacgaccaaggattttctaatcatcagctcagcggcacatctgggcctcgtcttgtttgccgatgttcgccgacatactgcgacgggcttagggacgcttgtgctgtggctgaccaaccaggtagctcgttgggccccgactgcggcgctgggcaagctgtccgtcggcagcacggccgagcaggagcagctgaggacgctgtgggtggcgttcatgctgctgcacgccgggatgccggacaacatcaccgcctacgcgttggaggacaccgtcatgtcaatgcgacaggttgtgagtgtgtttcttcagctgattggaccagtgtcaccgttcgctatcttgtacaagaatattttctccagcaatgacgaccccatgctgtgggtctcctcggtcatctgcttgatggccatcgccaggtatttggagggggcactttgggcgctgtggctcggaaacctggagaatatgcgaagcttcagtaaagaggaggaggcgaagagccggccaagaagacgaagcagcctgcagagtgctatgcgtggaggcagtacgccggatgatgatgatgagcagatcctgctcattgctcatgatacgttctatatcaccaagaacgccttcatcgactacttggacatgaataatgatgatgatgatgatgatgccggcagacaacaagaagcactgcctgccacctgggatgatatgttgtacaaggtggtcactatggagctctccctcatgtacgacatcatctacaccaaggcgaccattgtccacacatgttttggctacgccatccgtttcttatctccgatcgccggagccgctgcttttatgctgtattggttccacagcaaggaagggcaggcgcatggtgaggtcgtaatcacctacgccattctagccggcacattcattctggatatcaattggcttctcagggtagtggcgtcgacatggacctattcgttcctcaatgataggccccgccactggcttcatcatgcactcttgtgctccgggaaatggcgggtgatccgtggtgtcatcgtttctttcaatctggttcgctttattgccaacaaggagccaattagctacaggatgtggtcaggaaccattggtcagtacaacctgctccgaggctgcactcgtgacgacgatgcgggggagacgaccagcacctgcgtgagctatatgttgaagaaggtatcggaaaacaaatatttggggttctccactagtcattggatggagtacgaataccactacttgatgggcgaggatatttcaacgggtgtgattaaggagccattgttccgccgtatttgggaacaaattagatttgccttcccaaaactggaacgaaatgttttgatagagcagccgcaagtagctctatccggtactcattttaatcaggaaataaaccttgccctggattttactcctgatttacaagagaccattcttatcttgcacatcgccacggacctcgttctctcatggctggaacaggatctaactgaagcatcatcacaacagcaggtgcaggcaatgaaggcgttgtccaactacatgatgttcctcgtcgcagtgcgacctagcatgctacccggcctcatcctcagcagcctgtacgattctgtccgggatgctcttaccaaaatatggaaggataataaaaataatcctgacttttccagaggctccacaccgccgtccagagaaacatgtcttgccaacatcctgttttacttggaactggatcctcagcaggcaagatctgggaggactactgatctttacaacaagagtaatattctgtctgagggaactaaactagccatttttctgctaagcatgacattggaacagtttcatcgatatcatatgagaaggattgacattacactcaggagaaaattctaccggcagtttccggatttgatgagatgggtcgaagagcacgacggtcatacaccaaacgcattgatgccgacggaggtcgtcacggatgccatcttcagggcgtgggtacgtcagctgattaacgtatccacccgatgttctagggattgccatgccaagcagctcgcccgtggtggtgagctcaccaccgtcgtttggatccttgtcgaacacgctcgtgtacttcgtgtcagacgctcgacagaatag
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| Protein seq | MPGWNFVTTKDFLIISSAAHLGLVLFADVRRHTATGLGTLVLWLTNQVARWAPTAALGKLSVGSTAEQEQLRTLWVAFMLLHAGMPDNITAYALEDTVMSMRQVVSVFLQLIGPVSPFAILYKNIFSSNDDPMLWVSSVICLMAIARYLEGALWALWLGNLENMRSFSKEEEAKSRPRRRSSLQSAMRGGSTPDDDDEQILLIAHDTFYITKNAFIDYLDMNNDDDDDDAGRQQEALPATWDDMLYKVVTMELSLMYDIIYTKATIVHTCFGYAIRFLSPIAGAAAFMLYWFHSKEGQAHGEVVITYAILAGTFILDINWLLRVVASTWTYSFLNDRPRHWLHHALLCSGKWRVIRGVIVSFNLVRFIANKEPISYRMWSGTIGQYNLLRGCTRDDDAGETTSTCVSYMLKKVSENKYLGFSTSHWMEYEYHYLMGEDISTGVIKEPLFRRIWEQIRFAFPKLERNVLIEQPQVALSGTHFNQEINLALDFTPDLQETILILHIATDLVLSWLEQDLTEASSQQQVQAMKALSNYMMFLVAVRPSMLPGLILSSLYDSVRDALTKIWKDNKNNPDFSRGSTPPSRETCLANILFYLELDPQQARSGRTTDLYNKSNILSEGTKLAIFLLSMTLEQFHRYHMRRIDITLRRKFYRQFPDLMRWVEEHDGHTPNALMPTEVVTDAIFRAWVRQLINVSTRCSRDCHAKQLARGGELTTVVWILVEHARVLRVRRSTE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.093436 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0147200 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g06500 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0147200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0001780 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0002030 | SBH | 0.0 | 0.463664 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001920 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0001940 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0001890 | RBH | 0.0 | 5.498358 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0050500 | SBH | 0 | 0.1768 | 0.0048875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0001990 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0050200 | RBH | 0.006606 | 0.073594 | 0.0079685 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0001930 | SBH | 0.0 | 0.029694 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0002130 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0001950 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0001840 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0001920 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001970 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001960 | SBH | 0.0 | 0.0 | 0.0 |
