Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0001180 | OGI:04005640 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:1768644-1770141 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaccagaactgggcaaagagaacaatgcttgataccataaatattacctctctacatgtgaccatttcagttaatgaagcaagactccatcttttaggagggaaacctaacttggcattagcaagatttgacagatccatcaatggctgtacatggacatcatagtcattgaacattttccttgcgtcattatctatacatattccaacctgcactgacatggaaacaatggtttgcatgatgaaaacatgttaacccgtgcgtgggaaaaatggggatttatctgcagggaaagagggaagctgtgtttactttaacggacgaactatcctccaaaagagactttagtacaggtggcactccggagtgaatgatgtgcatgacataacaacgagttctctccatgcataactgcattacagcaactttacatggtggatctcctgcaaaatccataccccatcagttatgttccgtcaatatcattacttgcaagagtttgaggctttcttttttttcaaaaaagaagacttgattccagaaacccacatttgctcaatctgaacatgctgaaaatgcaattaaagatttggttaggatttaggaaaaacagcaaacctcttctcggaaagggcctccactcgagatcgaatccaagagaaacctggccagaggccttcatggtttcaattttgcataaaatgtcccttgtggctttctccacttctgaaggggtcctgcagtacactatgctgccattgaacattactggttggtaccttgccttcacattacctgcagaatacccatttcaatcaaaatgaaggatgatatacataaactacattgacctcagaaattaaccacggcaatgccagtaaatccctgattcctgtcaaaagaacctagaaaacaaattcttcaatatttctgactatttcctcaggagaaggaaatgttacacggagctggcatttcatttcagcaaaattgagaaatttaccccccaacgatgcatatgttgtactaccaagaaaccttaatccctatgaccctaaaagaactgatgcgagagacatgaaatcgatccagctccaggaataaaaagggattctttaaattaaacgtcatatcatgtcaaagaaaggggggaaagccaagaagagcacctcggaaagcgggaggagagggagcccatggcggcgcgggggaacaacccccggatgcggatgcggatgcggatgcggtgaccgggttggggcttggccagtcggggaggcggcggcgcttggcggcggcgtaggcggcctcgatggcctgcagctcggcctccgcctcggcgtcccagtagaagtcgtcctcctcctcctcctctccggcattgccgagggaggacgaggcaggaggctcgccggagttcatggcggtcgccggcgagcgatgggaagacggggaaaaggaggaatttttttttcctcgccttgtctactttgaaat
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| CDS seq | atgaactccggcgagcctcctgcctcgtcctccctcggcaatgccggagaggaggaggaggaggacgacttctactgggacgccgaggcggaggccgagctgcaggccatcgaggccgcctacgccgccgccaagcgccgccgcctccccgactggccaagccccaacccggtcaccgcatccgcatccgcatccgcatccgggggttgttcccccgcgccgccatgggctccctctcctcccgctttccgaggtaatgtgaaggcaaggtaccaaccagtaatgttcaatggcagcatagtgtactgcaggaccccttcagaagtggagaaagccacaagggacattttatgcaaaattgaaaccatgaaggcctctggccaggtttctcttggattcgatctcgagtggaggccctttccgagaagaggagatccaccatgtaaagttgctgtaatgcagttatgcatggagagaactcgttgttatgtcatgcacatcattcactccggagtgccacctgtactaaagtctcttttggaggatagttcgtccgttaaagttggaatatgtatagataatgacgcaaggaaaatgttcaatgactatgatgtccatgtacagccattgatggatctgtcaaatcttgctaatgccaagttaggtttccctcctaaaagatggagtcttgcttcattaactgaaatggtcacatgtagagaggtaatatttatggtatcaagcattgttctctttgcccagttctggtag
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| Protein seq | MNSGEPPASSSLGNAGEEEEEDDFYWDAEAEAELQAIEAAYAAAKRRRLPDWPSPNPVTASASASASGGCSPAPPWAPSPPAFRGNVKARYQPVMFNGSIVYCRTPSEVEKATRDILCKIETMKASGQVSLGFDLEWRPFPRRGDPPCKVAVMQLCMERTRCYVMHIIHSGVPPVLKSLLEDSSSVKVGICIDNDARKMFNDYDVHVQPLMDLSNLANAKLGFPPKRWSLASLTEMVTCREVIFMVSSIVLFAQFW |
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| Function | Werner Syndrome-like exonuclease [UniProtKB/Swiss-Prot:Q84LH3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0001180 | OsLiXu_04g0001180.01 | Chr04 | 1768644 | 1770141 | - | NAM | ||
| CDS seq | atgaactccggcgagcctcctgcctcgtcctccctcggcaatgccggagaggaggaggaggaggacgacttctactgggacgccgaggcggaggccgagctgcaggccatcgaggccgcctacgccgccgccaagcgccgccgcctccccgactggccaagccccaacccggtcaccgcatccgcatccgcatccgcatccgggggttgttcccccgcgccgccatgggctccctctcctcccgctttccgaggtaatgtgaaggcaaggtaccaaccagtaatgttcaatggcagcatagtgtactgcaggaccccttcagaagtggagaaagccacaagggacattttatgcaaaattgaaaccatgaaggcctctggccaggtttctcttggattcgatctcgagtggaggccctttccgagaagaggagatccaccatgtaaagttgctgtaatgcagttatgcatggagagaactcgttgttatgtcatgcacatcattcactccggagtgccacctgtactaaagtctcttttggaggatagttcgtccgttaaagttggaatatgtatagataatgacgcaaggaaaatgttcaatgactatgatgtccatgtacagccattgatggatctgtcaaatcttgctaatgccaagttaggtttccctcctaaaagatggagtcttgcttcattaactgaaatggtcacatgtagagaggtaatatttatggtatcaagcattgttctctttgcccagttctggtag
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| Protein seq | MNSGEPPASSSLGNAGEEEEEDDFYWDAEAEAELQAIEAAYAAAKRRRLPDWPSPNPVTASASASASGGCSPAPPWAPSPPAFRGNVKARYQPVMFNGSIVYCRTPSEVEKATRDILCKIETMKASGQVSLGFDLEWRPFPRRGDPPCKVAVMQLCMERTRCYVMHIIHSGVPPVLKSLLEDSSSVKVGICIDNDARKMFNDYDVHVQPLMDLSNLANAKLGFPPKRWSLASLTEMVTCREVIFMVSSIVLFAQFW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.189347 | 0.411037 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0129200 | RBH | 0.0 | 0.0 | 0.851706 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g03990 | RBH | 0.0 | 0.0 | 0.185447 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0129200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0001190 | RBH | 0.0 | 21.127249 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0001240 | RBH | 0.0 | 0.0 | 0.457356 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001220 | RBH | 0.0 | 2.635298 | 3.819260 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0001290 | RBH | 0.0 | 0.139448 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0001240 | RBH | 0.0 | 0.000000 | 4.005352 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0030000 | RBH | 1.5321125 | 1.942036 | 1.917259 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0001420 | RBH | 0.0 | 0.276734 | 0.376872 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0026300 | RBH | 1.212358 | 0.7523275 | 9.974783 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0001210 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0001400 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0001340 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0001350 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001340 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001350 | RBH | 0.0 | 0.0 | 0.0 |
