Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0040830 | OGI:03098390 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:38091542-38095104 | ||||||||
| Gene Symbol | RLCK121, OsRLCK121, SDK13 | ||||||||||
| DNA seq | cagtgagtctaagctcaacaacattcttcagtgactgcttctgaatgaatagctgaacaaggggccaagactcaagaacagctgtgtgctcataaatctagcattaaataagacccagtataagccttaatcacatgtttcctcagctactacgcaattgcaagctctccatggacatggagatgcaattgccagtgatgacacatgatgcaggcaatttgatctttggaaagggttgtcatgggtcccatgcatttaatttaatggaataaaggttgatagagaagtttgttgaaagttcctgcacatgtttttgtgtactatcaatctgccagattgctcatgccttgccccaaatgccaaaacaatctcttactagtagtatgcatgtgagtgtgaggcaagctgcttctcagtactgaacaaactgaagtagctgaatttttattgatctgcttatctctgcctttgctttagcttccccaaaaccataatctacaatcagacaagctattgcatctatgtttgcactccatttatcaatgcatcgcctcatttgaattatttgtacaagttacaacgcgaatataccattgagtttgatctaatctgtacttacaaattgcagaattcagctcatcaggcacatagatatcctctcaagtagaagtacgaaattgctcaccatcagtgaaaagcacttctcttccaccgacagctgcttctatgttccaccaaaacaaaatcaaccagatcaactccctaattgctcactaaccagagcaattttcccatttactggagcaaaaaaaaaagcaaaatcattttgctattcacctcatgagaagatgaagttttacattgtcatgtatggctcctgccccagcagcgaacgagacgcccggtcgcggatcctggccgacgccgagcgtcccacggccatctcctgctggacctcgtcgacgttcggcgacggcgtgggcgccggcggcgccgccgaggaagtaaacgtggagaccatgctggtgctgccgctgccgctgacaccggtggcggtggtcgccgacgtcaggctcaagaagctgtccgacgacttgggcggcggcggcctctcgagatccatgatcccttccagcatctgcaccaccttccccatcgacggccgctgcgccggctgctcctggatgcaccagaagctcacctgcagcgcgcgctccacctggaccatgtcgatgtcctccccggggagcttcttgtcgacaatggcggcgatgttccccttctcgtactcctcgtacgcccacacggagtacttcttccggccggtctcctccgacacgtcgaagttgcggtggccgctgacgagctcgagcagcaccatgccgtagctgtagacgtcggacttggccgtgatggggaggttggcgagccactccggcgcgaggtagcccctcgtcccgcgcacgctggtgagcgtccggtggcggtgatccttggggttgacgagcttggcgaggccgaagtcggagaccttggcgttgtggtgctcgtcgaggaggatgttctcgggcttgatgtcgcagtggacgatgcagtcgcggcactcctcgtggaggtaggtgatgccgcgggcggtgccgacggcgacggcgaaccgcgtcggccacggcatcctgccgcccggcgcgtcggcgaagaggaaggcgtcgagggagccgttcttcatgaactcgtagacgagcaggcggtggcgcccctcggagcagaagccgatgaggcggacgaggttgaggtggtgcgtgctgctgatggtggccacctccatcctgaactgcttctccccctgctcgatcccctccagctgcttcaccgccaccaccgtccggttcgccagcacgccgcggtacacggcgccgaacccgccggcgcccagcttctccttgaaccccttggtcgatcgctgcagctcccggtacgagaactgcaccggcgcgccggacgcgtactccagcagcgcgtactgcgccgacgccgcgccgtacttggggctgtgccggcagaacacccaccacagcgcccactcgcacagcaccagcccggacaccgcgccgagcaccaccaccgcgaccacccacccgcggacgcccgacgccctgcccgacggcgacccgccgccgccgaggggcgggttggggatccccgggaagcagaccttgacgaacgacgtgctgggcagcgccgcggactggtacccgctgacgaagttggacaccttgaggaagcagaggcccgagccgtcggagagcgccgtggaggcgacgcacgagctgccggagaggcagttgaggcggcaggcggtgatgccgacgaagaactgctccgtcgtgatctccggcgggtaggtcaggaactgcgtgttgtcgagctggagcatggtggagttgcccgggcagttctggagctcgatcttgcgctggcagccgccgcgcgggtcggccgggttgctcagctggaagttctccgacgggcaccggcacaccggcgacgtgccgttgtagccgcacacgcccatgttgccgcagtagccgaacacctggcactggtccgccaccgccgaccactgctccgtcggcgcgttgctgccgcgcgccgcgctgtaggcgcggaagttgccgtccgtgtctaggcgcacgaacctcagcatgtcgccgctctcgccgtagttgctgctgtacgcgacgacgacgggagaggtgagcgagccgtcggtgagggagacgataccgttggtttgcatcgccagcgtcggcgagctcagcgtcttgttcgccgtgaaggtggtgttgtaccccttgttgaagtaggtgaccgtgccgccgccggtccacttgagggtgaggttgccggtgttccggtcgagggagaattggtagctcgccgaggtgaggttcatgccggaggtgaagttctgccccatcaccaccgtgtccgtggggtgttcgaacgattgccacaacgtcgccgacgagttcctgagcaggaggttgccgctctcctgcagcgcggcggtggtgaccccttgcccgccggtgttcgatgaccagaccacggcgccggagccgttgacgagctggaggtcgccgctggacgagaggcggagcgcgccaccggagtcaacggtcgcgccgttgccggccgtccacacgggcaccccgccggcgtaggtgatggcggcgacgaagagggacggcgaggtcggggacgccgtgaaggagagggagaaggtgttgttgggagacgaccacaacgcctggttcgccggcgagagggaggagcccaacggcatgtccgcgccatgggagaggagagggaggaggagcagcaagaagcagccgcctaccagagcagcatctccggccgccttccgccgcatcttcctccaccggaatcagccgccgattccggctggtttcttgaccggcgcagcgattgcagcgagctacacgcacagctcggcttcccctctcatggcgacgtctcctctctcgcggaatccatcggag
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| CDS seq | atgcggcggaaggcggccggagatgctgctctggtaggcggctgcttcttgctgctcctcctccctctcctctcccatggcgcggacatgccgttgggctcctccctctcgccggcgaaccaggcgttgtggtcgtctcccaacaacaccttctccctctccttcacggcgtccccgacctcgccgtccctcttcgtcgccgccatcacctacgccggcggggtgcccgtgtggacggccggcaacggcgcgaccgttgactccggtggcgcgctccgcctctcgtccagcggcgacctccagctcgtcaacggctccggcgccgtggtctggtcatcgaacaccggcgggcaaggggtcaccaccgccgcgctgcaggagagcggcaacctcctgctcaggaactcgtcggcgacgttgtggcaatcgttcgaacaccccacggacacggtggtgatggggcagaacttcacctccggcatgaacctcacctcggcgagctaccaattctccctcgaccggaacaccggcaacctcaccctcaagtggaccggcggcggcacggtcacctacttcaacaaggggtacaacaccaccttcacggcgaacaagacgctgagctcgccgacgctggcgatgcaaaccaacggtatcgtctccctcaccgacggctcgctcacctctcccgtcgtcgtcgcgtacagcagcaactacggcgagagcggcgacatgctgaggttcgtgcgcctagacacggacggcaacttccgcgcctacagcgcggcgcgcggcagcaacgcgccgacggagcagtggtcggcggtggcggaccagtgccaggtgttcggctactgcggcaacatgggcgtgtgcggctacaacggcacgtcgccggtgtgccggtgcccgtcggagaacttccagctgagcaacccggccgacccgcgcggcggctgccagcgcaagatcgagctccagaactgcccgggcaactccaccatgctccagctcgacaacacgcagttcctgacctacccgccggagatcacgacggagcagttcttcgtcggcatcaccgcctgccgcctcaactgcctctccggcagctcgtgcgtcgcctccacggcgctctccgacggctcgggcctctgcttcctcaaggtgtccaacttcgtcagcgggtaccagtccgcggcgctgcccagcacgtcgttcgtcaaggtctgcttcccggggatccccaacccgcccctcggcggcggcgggtcgccgtcgggcagggcgtcgggcgtccgcgggtgggtggtcgcggtggtggtgctcggcgcggtgtccgggctggtgctgtgcgagtgggcgctgtggtgggtgttctgccggcacagccccaagtacggcgcggcgtcggcgcagtacgcgctgctggagtacgcgtccggcgcgccggtgcagttctcgtaccgggagctgcagcgatcgaccaaggggttcaaggagaagctgggcgccggcgggttcggcgccgtgtaccgcggcgtgctggcgaaccggacggtggtggcggtgaagcagctggaggggatcgagcagggggagaagcagttcaggatggaggtggccaccatcagcagcacgcaccacctcaacctcgtccgcctcatcggcttctgctccgaggggcgccaccgcctgctcgtctacgagttcatgaagaacggctccctcgacgccttcctcttcgccgacgcgccgggcggcaggatgccgtggccgacgcggttcgccgtcgccgtcggcaccgcccgcggcatcacctacctccacgaggagtgccgcgactgcatcgtccactgcgacatcaagcccgagaacatcctcctcgacgagcaccacaacgccaaggtctccgacttcggcctcgccaagctcgtcaaccccaaggatcaccgccaccggacgctcaccagcgtgcgcgggacgaggggctacctcgcgccggagtggctcgccaacctccccatcacggccaagtccgacgtctacagctacggcatggtgctgctcgagctcgtcagcggccaccgcaacttcgacgtgtcggaggagaccggccggaagaagtactccgtgtgggcgtacgaggagtacgagaaggggaacatcgccgccattgtcgacaagaagctccccggggaggacatcgacatggtccaggtggagcgcgcgctgcaggtgagcttctggtgcatccaggagcagccggcgcagcggccgtcgatggggaaggtggtgcagatgctggaagggatcatggatctcgagaggccgccgccgcccaagtcgtcggacagcttcttgagcctgacgtcggcgaccaccgccaccggtgtcagcggcagcggcagcaccagcatggtctccacgtttacttcctcggcggcgccgccggcgcccacgccgtcgccgaacgtcgacgaggtccagcaggagatggccgtgggacgctcggcgtcggccaggatccgcgaccgggcgtctcgttcgctgctggggcaggagccatacatgacaatgtaa
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| Protein seq | MRRKAAGDAALVGGCFLLLLLPLLSHGADMPLGSSLSPANQALWSSPNNTFSLSFTASPTSPSLFVAAITYAGGVPVWTAGNGATVDSGGALRLSSSGDLQLVNGSGAVVWSSNTGGQGVTTAALQESGNLLLRNSSATLWQSFEHPTDTVVMGQNFTSGMNLTSASYQFSLDRNTGNLTLKWTGGGTVTYFNKGYNTTFTANKTLSSPTLAMQTNGIVSLTDGSLTSPVVVAYSSNYGESGDMLRFVRLDTDGNFRAYSAARGSNAPTEQWSAVADQCQVFGYCGNMGVCGYNGTSPVCRCPSENFQLSNPADPRGGCQRKIELQNCPGNSTMLQLDNTQFLTYPPEITTEQFFVGITACRLNCLSGSSCVASTALSDGSGLCFLKVSNFVSGYQSAALPSTSFVKVCFPGIPNPPLGGGGSPSGRASGVRGWVVAVVVLGAVSGLVLCEWALWWVFCRHSPKYGAASAQYALLEYASGAPVQFSYRELQRSTKGFKEKLGAGGFGAVYRGVLANRTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNGSLDAFLFADAPGGRMPWPTRFAVAVGTARGITYLHEECRDCIVHCDIKPENILLDEHHNAKVSDFGLAKLVNPKDHRHRTLTSVRGTRGYLAPEWLANLPITAKSDVYSYGMVLLELVSGHRNFDVSEETGRKKYSVWAYEEYEKGNIAAIVDKKLPGEDIDMVQVERALQVSFWCIQEQPAQRPSMGKVVQMLEGIMDLERPPPPKSSDSFLSLTSATTATGVSGSGSTSMVSTFTSSAAPPAPTPSPNVDEVQQEMAVGRSASARIRDRASRSLLGQEPYMTM |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [UniProtKB/Swiss-Prot:Q9XID3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0040830 | OsLiXu_03g0040830.01 | Chr03 | 38091542 | 38095104 | - | NAM | ||
| CDS seq | atgcggcggaaggcggccggagatgctgctctggtaggcggctgcttcttgctgctcctcctccctctcctctcccatggcgcggacatgccgttgggctcctccctctcgccggcgaaccaggcgttgtggtcgtctcccaacaacaccttctccctctccttcacggcgtccccgacctcgccgtccctcttcgtcgccgccatcacctacgccggcggggtgcccgtgtggacggccggcaacggcgcgaccgttgactccggtggcgcgctccgcctctcgtccagcggcgacctccagctcgtcaacggctccggcgccgtggtctggtcatcgaacaccggcgggcaaggggtcaccaccgccgcgctgcaggagagcggcaacctcctgctcaggaactcgtcggcgacgttgtggcaatcgttcgaacaccccacggacacggtggtgatggggcagaacttcacctccggcatgaacctcacctcggcgagctaccaattctccctcgaccggaacaccggcaacctcaccctcaagtggaccggcggcggcacggtcacctacttcaacaaggggtacaacaccaccttcacggcgaacaagacgctgagctcgccgacgctggcgatgcaaaccaacggtatcgtctccctcaccgacggctcgctcacctctcccgtcgtcgtcgcgtacagcagcaactacggcgagagcggcgacatgctgaggttcgtgcgcctagacacggacggcaacttccgcgcctacagcgcggcgcgcggcagcaacgcgccgacggagcagtggtcggcggtggcggaccagtgccaggtgttcggctactgcggcaacatgggcgtgtgcggctacaacggcacgtcgccggtgtgccggtgcccgtcggagaacttccagctgagcaacccggccgacccgcgcggcggctgccagcgcaagatcgagctccagaactgcccgggcaactccaccatgctccagctcgacaacacgcagttcctgacctacccgccggagatcacgacggagcagttcttcgtcggcatcaccgcctgccgcctcaactgcctctccggcagctcgtgcgtcgcctccacggcgctctccgacggctcgggcctctgcttcctcaaggtgtccaacttcgtcagcgggtaccagtccgcggcgctgcccagcacgtcgttcgtcaaggtctgcttcccggggatccccaacccgcccctcggcggcggcgggtcgccgtcgggcagggcgtcgggcgtccgcgggtgggtggtcgcggtggtggtgctcggcgcggtgtccgggctggtgctgtgcgagtgggcgctgtggtgggtgttctgccggcacagccccaagtacggcgcggcgtcggcgcagtacgcgctgctggagtacgcgtccggcgcgccggtgcagttctcgtaccgggagctgcagcgatcgaccaaggggttcaaggagaagctgggcgccggcgggttcggcgccgtgtaccgcggcgtgctggcgaaccggacggtggtggcggtgaagcagctggaggggatcgagcagggggagaagcagttcaggatggaggtggccaccatcagcagcacgcaccacctcaacctcgtccgcctcatcggcttctgctccgaggggcgccaccgcctgctcgtctacgagttcatgaagaacggctccctcgacgccttcctcttcgccgacgcgccgggcggcaggatgccgtggccgacgcggttcgccgtcgccgtcggcaccgcccgcggcatcacctacctccacgaggagtgccgcgactgcatcgtccactgcgacatcaagcccgagaacatcctcctcgacgagcaccacaacgccaaggtctccgacttcggcctcgccaagctcgtcaaccccaaggatcaccgccaccggacgctcaccagcgtgcgcgggacgaggggctacctcgcgccggagtggctcgccaacctccccatcacggccaagtccgacgtctacagctacggcatggtgctgctcgagctcgtcagcggccaccgcaacttcgacgtgtcggaggagaccggccggaagaagtactccgtgtgggcgtacgaggagtacgagaaggggaacatcgccgccattgtcgacaagaagctccccggggaggacatcgacatggtccaggtggagcgcgcgctgcaggtgagcttctggtgcatccaggagcagccggcgcagcggccgtcgatggggaaggtggtgcagatgctggaagggatcatggatctcgagaggccgccgccgcccaagtcgtcggacagcttcttgagcctgacgtcggcgaccaccgccaccggtgtcagcggcagcggcagcaccagcatggtctccacgtttacttcctcggcggcgccgccggcgcccacgccgtcgccgaacgtcgacgaggtccagcaggagatggccgtgggacgctcggcgtcggccaggatccgcgaccgggcgtctcgttcgctgctggggcaggagccatacatgacaatgtaa
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| Protein seq | MRRKAAGDAALVGGCFLLLLLPLLSHGADMPLGSSLSPANQALWSSPNNTFSLSFTASPTSPSLFVAAITYAGGVPVWTAGNGATVDSGGALRLSSSGDLQLVNGSGAVVWSSNTGGQGVTTAALQESGNLLLRNSSATLWQSFEHPTDTVVMGQNFTSGMNLTSASYQFSLDRNTGNLTLKWTGGGTVTYFNKGYNTTFTANKTLSSPTLAMQTNGIVSLTDGSLTSPVVVAYSSNYGESGDMLRFVRLDTDGNFRAYSAARGSNAPTEQWSAVADQCQVFGYCGNMGVCGYNGTSPVCRCPSENFQLSNPADPRGGCQRKIELQNCPGNSTMLQLDNTQFLTYPPEITTEQFFVGITACRLNCLSGSSCVASTALSDGSGLCFLKVSNFVSGYQSAALPSTSFVKVCFPGIPNPPLGGGGSPSGRASGVRGWVVAVVVLGAVSGLVLCEWALWWVFCRHSPKYGAASAQYALLEYASGAPVQFSYRELQRSTKGFKEKLGAGGFGAVYRGVLANRTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNGSLDAFLFADAPGGRMPWPTRFAVAVGTARGITYLHEECRDCIVHCDIKPENILLDEHHNAKVSDFGLAKLVNPKDHRHRTLTSVRGTRGYLAPEWLANLPITAKSDVYSYGMVLLELVSGHRNFDVSEETGRKKYSVWAYEEYEKGNIAAIVDKKLPGEDIDMVQVERALQVSFWCIQEQPAQRPSMGKVVQMLEGIMDLERPPPPKSSDSFLSLTSATTATGVSGSGSTSMVSTFTSSAAPPAPTPSPNVDEVQQEMAVGRSASARIRDRASRSLLGQEPYMTM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0040830 | OsLiXu_03g0040830.02 | Chr03 | 38092086 | 38092810 | - | IsoSeq | ||
| CDS seq | ccgccattgtcgacaagaagctccccggggaggacatcgacatggtccaggtggagcgcgcgctgc |
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| Protein seq | PPLSTRSSPGRTSTWSRWSARC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.268024 | 0.657468 | 1.421943 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0838100 | RBH | 4.823674 | 5.052288 | 3.501149 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g62180 | RBH | 3.016187 | 2.744858 | 0.771134 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0838100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0041330 | RBH | 0.621677 | 9.156245 | 4.058520 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0041020 | RBH | 0.474736 | 6.167718 | 1.714798 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0041090 | RBH | 1.539425 | 9.214417 | 2.867435 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0041320 | RBH | 0.347708 | 0.283559 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0040830 | RBH | 4.510674 | 18.606415 | 9.827965 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0601200 | RBH | 7.6337955 | 23.216933 | 7.0731245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0040580 | RBH | 0.398032 | 0.586707 | 0.510517 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0603800 | RBH | 0.0215025 | 0 | 0.005079 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0041160 | RBH | 0.598684 | 0.164621 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0041070 | RBH | 0.518336 | 4.782173 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0040760 | RBH | 6.580937 | 14.613091 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0040930 | SBH | 2.858339 | 3.407155 | 3.239599 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0040860 | RBH | 0.143616 | 8.148820 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G040640 | RBH | 0.340139 | 1.286395 | 1.405127 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0040350 | RBH | 0.774254 | 9.322786 | 3.289850 |
