Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0039430 | OGI:03096060 | 11/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:37307999-37310062 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagttctgcccatctgaatggctggatgcagcggtaacatgaagcctagaacgTtttttttttctatttcttccaacgaaagagtgtgctccgattggaatgtgtactgtatacagggcagtttgtagtgtattgggcagtttatgttgttttattggtgaccaatcatcaacgaataagaccatgtttagatgggactaaaacttttaattccctatcacattggatgtttagacactaattataaatattaaacgtagactattaataaacccattcataatcttggactaattcgcgagacgaatctattgagcctaattaatctatgattagcttatgtgatgctacagtaaacattatctaattatggattaattatgcttaaaaaatttgtctcgcgaattaggttttatttatgtaattaattttgtaagtagtatatatttaatactcaaaatatagggattaaagctaagtttatggatccaaacactacgtaagtacagctcggttcaggcgtgcagcatccagcatactggaatttggacagcagaggatgaaacccatgggacatggactcgaaggcttacctgagcttcgttttggaaaaagtacaccgaaggtccctcaacttgttatcgagttacaaaatcgtcccctaaccgcaaaaccagataccagacgtcccccaaccgttcaatttagatcctccggtgattttgaccctgattttatctgggctgatgactgagttagcgtgaaacccatcgtggacccatatatcagaatgacaggtcatctctccctcctcttctctcccttcctcatctctccctctcatctcatttctctcctctctgcagggaagctggcgggtagggaggaggtccggcagccggcggcggcgcatgcgacctcggggtcggaccgtcggagaggcccgggaggcggcggcggcggcggcgacgacgacgacacgggataagggaggcggcggcggcggcgacgcttgagaagggagaggcggccggtggcgccggcgcgggaagaagctgtcttcggcgtcgtgcccgctctgccctccaccgcctgcttcgcccgccgctgccccgcgctcacacactcccgccggcgacgccgctgacggcgcgggctcgagaactgcggccatggatgacgacggcggcgacgtcctcgctccccccgccccgctccccgtcggcgccctcttcctctcccgcagcgcgcctgcccgccgctcgtctgctccgtcggccggccgctccccacgcagtcggcggtggcgaaggtgaccgtgccggcgtcgaggtcgtagccgacgtggatgttctgctgcgccaggttcccgaggatggacaccggctgctgcttcgtcgtcgccacgattaccaggcacagcgtcccctcctgcaccgtcacggacgcgttctccggcttcagcgccaccgccgcgcggccgccgccgccgccgaactccagcgtcaagtccggactcgcttgttcggtttgcttcctgctggatgtacacatgaggtcattcaagatcagtaactcatactctattctagcaagctggctgttagtgagaattctgaattctcattgcatcgcccaacgaagatagaagatcggagtgttatacatcaatcaatttcttagctgggagtgttactcctgcattgctctacaatttatgggtcatgtaatttgatctctcacagaatctatagcgaggtaagaaagcgaaaccggcgccacaaaatatcttgaaattctgcttgttcatatactgttcttctgattaaagaacaacttagcttgagattgttttgttcacttgcaatttgcaggagtaacaaagcttatttttgcattgccggagtccacgatgatgcgggagctcgccgccgatgcaccgtcttgttgccgaccttgacgaagtcgaggaccacggtgtagtacgtgtccacgtccccggcgacgagcggcgtgctcgctgcgccgagctcggtgacgttggcgagggtgccgaagttgaa
More
|
||||||||||
| CDS seq | atgtgtacatccagcaggaagcaaaccgaacaagcgagtccggacttgacgctggagttcggcggcggcggcggccgcgcggcggtggcgctgaagccggagaacgcgtccgtgacggtgcaggaggggacgctgtgcctggtaatcgtggcgacgacgaagcagcagccggtgtccatcctcgggaacctggcgcagcagaacatccacgtcggctacgacctcgacgccggcacggtcaccttcgccaccgccgactgcgtggggagcggccggccgacggagcagacgagcggcgggcaggcgcgctgcgggagaggaagagggcgccgacggggagcggggcggggggagcgaggacgtcgccgccgtcatgggcagaactag |
||||||||||
| Protein seq | MCTSSRKQTEQASPDLTLEFGGGGGRAAVALKPENASVTVQEGTLCLVIVATTKQQPVSILGNLAQQNIHVGYDLDAGTVTFATADCVGSGRPTEQTSGGQARCGRGRGRRRGAGRGERGRRRRHGQN |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0039430 | OsLiXu_03g0039430.01 | Chr03 | 37307999 | 37310062 | - | NAM | ||
| CDS seq | atgtgtacatccagcaggaagcaaaccgaacaagcgagtccggacttgacgctggagttcggcggcggcggcggccgcgcggcggtggcgctgaagccggagaacgcgtccgtgacggtgcaggaggggacgctgtgcctggtaatcgtggcgacgacgaagcagcagccggtgtccatcctcgggaacctggcgcagcagaacatccacgtcggctacgacctcgacgccggcacggtcaccttcgccaccgccgactgcgtggggagcggccggccgacggagcagacgagcggcgggcaggcgcgctgcgggagaggaagagggcgccgacggggagcggggcggggggagcgaggacgtcgccgccgtcatgggcagaactag
More
|
|||||||
| Protein seq | MCTSSRKQTEQASPDLTLEFGGGGGRAAVALKPENASVTVQEGTLCLVIVATTKQQPVSILGNLAQQNIHVGYDLDAGTVTFATADCVGSGRPTEQTSGGQARCGRGRGRRRGAGRGERGRRRRHGQN |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.630947 | 0.0 | 0.664702 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g60500 | RBH | 0.420564 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0039890 | RBH | 0.224746 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0039570 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0039630 | RBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0039880 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0039420 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0586300 | RBH | 3.1462055 | 3.1166645 | 4.1795755 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0588700 | RBH | 2.346512 | 4.242445 | 3.748631 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G039240 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0038990 | RBH | 1.058499 | 0.0 | 0.953484 |
