Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0038740 | OGI:03094760 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:36832914-36834703 | ||||||||
| Gene Symbol | IPT4, OsIPT4 | ||||||||||
| DNA seq | acagcatccatcgcaaaatccacctcagctagctacccaagcgcacgcgccaccgcccgcgcgcgagctgagctaacgatcaacaccggtcgaacacctagcgagcatcaccaccatcatcaccatgcaggcgtacatggcggtcgccgccgctccggcgccaccggcctcgctgacgctgctgccgcgcaccaccaccgtcatcagggacagggagcgcttcgacgcggccgtcccggtggcgccgctcgtgctgaggcatggcgccggcgtcaagcacaaggccgtcgtggtgatgggcgccacgggcaccgggaagtcacgcctcgccgtcgacctcgccctgcggttcggcggcgaggtcatcaactccgacaagatgcagatacattccgggttggatgtggtgacgaacaaggtgaccgaggaggagtgcgccggcgtgccgcaccacctgatcggcgtggcgcgccccgacgacgagttcacggccgccgacttccgccgcgaggcggcgcgcgccgcggcgggggcggttgagagggggaggttgcccatcatcgccggggggtccaactcctacgtcgaggagctcgtcgaaggcgacggccgcgcgttccgggagcggtacgagtgctgcttcctctgggtcgacgtggatctcgaggtgctccgcggtttcgtcgcccgccgcgtcgacgagatgtgccggcgaggcctcgtccgggaggtggccgcagcgttcgacccgcgccgcaccgactactccaggggcatctggcgcgccatcggcgtgccggagctcgacgcgtacctccgctcccgcggcgacggcgccgacgaggaggagcgggcgcgcatgctcgccgcggccgtcgcggagatcaagtcgaacacgttccggctcgcgtgccgccagcaccgcaagatcgagaggctggaccgcatgtggcgcgcccgccgcgtcgacgccacggaggtgttcaggaggcgcggccacgccgccgacgacgcgtggcagcggctcgtcgccgcgccgtgcatcgacgccgtccggtcattcctcttcgaggaccaagaacgcagcagcatcgccgccggcaaacctcccctcttcgccgccggcaaggccacttcaggcaacatctccgtcttcgcctccgcggccgccgccatggcggcggccgctgcaatctgagaagcgcaggcaccaacctacttacatacacatacatgaccaaacacaaaaacgcagagcaccatgccactctcaagacattcaggctgctgccaatcgccattgccgatcaaattcagagctcgtcagtcggatcaaacgatgaaggctgctgcttctgcggtcaacatctcgatgacctgccaattgcaatgcaaagcaagattgttcatatactggtaactggttgactcctttttgtttttgctgggtttctttgtgatatgaggagattgatgaattgcgcgcgagaatgtaacttatgagttttgagtttttttttctttttggtttctcctctgattttgggtgtgtaacagtaggagtaaaaactaaaaagtattgacttggatgttaattgggggattgatgtaatagcctctccttgtaacatagaaatcatgagctgaaataattaaatcgttgagaccttgcaaagaaaaagggggaaaaacaaaagaaggaatcttgtgaaaggggaatatttggcagtctttatcgtaatatatcaactttttcaaggtcttcactgagctttgctattgagaatctc
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| CDS seq | atgcaggcgtacatggcggtcgccgccgctccggcgccaccggcctcgctgacgctgctgccgcgcaccaccaccgtcatcagggacagggagcgcttcgacgcggccgtcccggtggcgccgctcgtgctgaggcatggcgccggcgtcaagcacaaggccgtcgtggtgatgggcgccacgggcaccgggaagtcacgcctcgccgtcgacctcgccctgcggttcggcggcgaggtcatcaactccgacaagatgcagatacattccgggttggatgtggtgacgaacaaggtgaccgaggaggagtgcgccggcgtgccgcaccacctgatcggcgtggcgcgccccgacgacgagttcacggccgccgacttccgccgcgaggcggcgcgcgccgcggcgggggcggttgagagggggaggttgcccatcatcgccggggggtccaactcctacgtcgaggagctcgtcgaaggcgacggccgcgcgttccgggagcggtacgagtgctgcttcctctgggtcgacgtggatctcgaggtgctccgcggtttcgtcgcccgccgcgtcgacgagatgtgccggcgaggcctcgtccgggaggtggccgcagcgttcgacccgcgccgcaccgactactccaggggcatctggcgcgccatcggcgtgccggagctcgacgcgtacctccgctcccgcggcgacggcgccgacgaggaggagcgggcgcgcatgctcgccgcggccgtcgcggagatcaagtcgaacacgttccggctcgcgtgccgccagcaccgcaagatcgagaggctggaccgcatgtggcgcgcccgccgcgtcgacgccacggaggtgttcaggaggcgcggccacgccgccgacgacgcgtggcagcggctcgtcgccgcgccgtgcatcgacgccgtccggtcattcctcttcgaggaccaagaacgcagcagcatcgccgccggcaaacctcccctcttcgccgccggcaaggccacttcaggcaacatctccgtcttcgcctccgcggccgccgccatggcggcggccgctgcaatctga
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| Protein seq | MQAYMAVAAAPAPPASLTLLPRTTTVIRDRERFDAAVPVAPLVLRHGAGVKHKAVVVMGATGTGKSRLAVDLALRFGGEVINSDKMQIHSGLDVVTNKVTEEECAGVPHHLIGVARPDDEFTAADFRREAARAAAGAVERGRLPIIAGGSNSYVEELVEGDGRAFRERYECCFLWVDVDLEVLRGFVARRVDEMCRRGLVREVAAAFDPRRTDYSRGIWRAIGVPELDAYLRSRGDGADEEERARMLAAAVAEIKSNTFRLACRQHRKIERLDRMWRARRVDATEVFRRRGHAADDAWQRLVAAPCIDAVRSFLFEDQERSSIAAGKPPLFAAGKATSGNISVFASAAAAMAAAAAI |
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| Function | Adenylate isopentenyltransferase 3, chloroplastic [UniProtKB/Swiss-Prot:Q93WC9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0038740 | OsLiXu_03g0038740.01 | Chr03 | 36832914 | 36834703 | + | NAM | ||
| CDS seq | atgcaggcgtacatggcggtcgccgccgctccggcgccaccggcctcgctgacgctgctgccgcgcaccaccaccgtcatcagggacagggagcgcttcgacgcggccgtcccggtggcgccgctcgtgctgaggcatggcgccggcgtcaagcacaaggccgtcgtggtgatgggcgccacgggcaccgggaagtcacgcctcgccgtcgacctcgccctgcggttcggcggcgaggtcatcaactccgacaagatgcagatacattccgggttggatgtggtgacgaacaaggtgaccgaggaggagtgcgccggcgtgccgcaccacctgatcggcgtggcgcgccccgacgacgagttcacggccgccgacttccgccgcgaggcggcgcgcgccgcggcgggggcggttgagagggggaggttgcccatcatcgccggggggtccaactcctacgtcgaggagctcgtcgaaggcgacggccgcgcgttccgggagcggtacgagtgctgcttcctctgggtcgacgtggatctcgaggtgctccgcggtttcgtcgcccgccgcgtcgacgagatgtgccggcgaggcctcgtccgggaggtggccgcagcgttcgacccgcgccgcaccgactactccaggggcatctggcgcgccatcggcgtgccggagctcgacgcgtacctccgctcccgcggcgacggcgccgacgaggaggagcgggcgcgcatgctcgccgcggccgtcgcggagatcaagtcgaacacgttccggctcgcgtgccgccagcaccgcaagatcgagaggctggaccgcatgtggcgcgcccgccgcgtcgacgccacggaggtgttcaggaggcgcggccacgccgccgacgacgcgtggcagcggctcgtcgccgcgccgtgcatcgacgccgtccggtcattcctcttcgaggaccaagaacgcagcagcatcgccgccggcaaacctcccctcttcgccgccggcaaggccacttcaggcaacatctccgtcttcgcctccgcggccgccgccatggcggcggccgctgcaatctga
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| Protein seq | MQAYMAVAAAPAPPASLTLLPRTTTVIRDRERFDAAVPVAPLVLRHGAGVKHKAVVVMGATGTGKSRLAVDLALRFGGEVINSDKMQIHSGLDVVTNKVTEEECAGVPHHLIGVARPDDEFTAADFRREAARAAAGAVERGRLPIIAGGSNSYVEELVEGDGRAFRERYECCFLWVDVDLEVLRGFVARRVDEMCRRGLVREVAAAFDPRRTDYSRGIWRAIGVPELDAYLRSRGDGADEEERARMLAAAVAEIKSNTFRLACRQHRKIERLDRMWRARRVDATEVFRRRGHAADDAWQRLVAAPCIDAVRSFLFEDQERSSIAAGKPPLFAAGKATSGNISVFASAAAAMAAAAAI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.928271 | 0.128609 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0810100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g59570 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0810100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0039200 | RBH | 0.0 | 6.286235 | 0.380449 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0038870 | RBH | 0.0 | 5.541152 | 0.191387 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0038930 | RBH | 0.252637 | 3.060099 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0039220 | RBH | 0.0 | 0.115163 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0038770 | RBH | 0.0 | 2.491226 | 0.895964 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0578200 | RBH | 0.838331 | 2.536181 | 4.225989 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0038540 | RBH | 0.054053 | 0.264669 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0580800 | RBH | 0.6685815 | 0.203905 | 0.8408545 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0039100 | RBH | 0.039232 | 0.033941 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0039060 | RBH | 0.0 | 10.705958 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0038710 | RBH | 0.0 | 43.916801 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0007360 | RBH | 0.0 | 0.311955 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0038800 | RBH | 0.0 | 3.268703 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G038570 | RBH | 0.0 | 0.486558 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0038330 | RBH | 0.285092 | 4.569963 | 1.013400 |
