Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0038620 | OGI:03094530 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:36754049-36755126 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctacagcttgaatcgcagcctaaaattccgcagcagcttcctcaggcaactcctcgccttcgtctcgcggcacttggctcctcctccgccgccgccgccgccgtcgccggagaagattgctcggagccggcccagatgccgcgggctcctcccctcgtacgccgccgcctccggattctcctgaaaccgccaaaacaaacgatcgaggtaagaacagctcaccgagaagaagacattcgcgattcggaaggatgcagcaatggcggcgcaccagtatgtagttcttccagtcggcctgcttggcgacgaccacgcggcggcgagggtcgtagctgaaccgggggtggttcttgatccggctcgccgcctcgaactcccgccggaactcgcccagccgccgctggagctcctccacggggaagccggacccggtggcggcgttcagctcggcgcggatggatgaccagtcctcgccggtgagctcgcccacgttcctcgcgccgccgccgccgcccgtgtggcgcagcagcaggtcgaggaacttggcgtcgtgctggctcgtccacgcgtccacctgcagccgcgacaggatcttgcggagcgcgcgccgcgacaccggcttcctcttgatcgccttctcctcgtcgtcggcggcgacatggacatgcaactgctgctgctgctgctgatgcatttcttgcttcgccgtcgccgtctccggctgcatcaaccgcacattatgcatctccgtcctgccatagatcgatcgatcgatcggttcgtcaaaacaaaatcgtaagaatgctcgccgtcgtcgttgtgaaatttgcacgtactgataggcgtcggtggcgaggcggaggctgaggaagacgacggagtcgtgacgcacgccgtagtccgcgagcgtgcggtggtcgtcgtcgaggcaccggccggcgaagaacagccgctgcatggccaccgcgatgcgctcccgggccatgaccatgcccttgacctgcgccaccgtcgtcgtggcgccgtccacgtcgagcgccacccggtccccgcgcagcgtgcgcaccatgatcctcat
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| CDS seq | atgaggatcatggtgcgcacgctgcgcggggaccgggtggcgctcgacgtggacggcgccacgacgacggtggcgcaggtcaagggcatggtcatggcccgggagcgcatcgcggtggccatgcagcggctgttcttcgccggccggtgcctcgacgacgaccaccgcacgctcgcggactacggcgtgcgtcacgactccgtcgtcttcctcagcctccgcctcgccaccgacgcctatcagtacgtgcaaatttcacaacgacgacggcgagcattcttacgattttgttttgacgaaccgatcgatcgatcgatctatggcaggacggagatgcataatgtgcggttgatgcagccggagacggcgacggcgaagcaagaaatgcatcagcagcagcagcagcagttgcatgtccatgtcgccgccgacgacgaggagaaggcgatcaagaggaagccggtgtcgcggcgcgcgctccgcaagatcctgtcgcggctgcaggtggacgcgtggacgagccagcacgacgccaagttcctcgacctgctgctgcgccacacgggcggcggcggcggcgcgaggaacgtgggcgagctcaccggcgaggactggtcatccatccgcgccgagctgaacgccgccaccgggtccggcttccccgtggaggagctccagcggcggctgggcgagttccggcgggagttcgaggcggcgagccggatcaagaaccacccccggttcagctacgaccctcgccgccgcgtggtcgtcgccaagcaggccgactggaagaactacatactggagaatccggaggcggcggcgtacgaggggaggagcccgcggcatctgggccggctccgagcaatcttctccggcgacggcggcggcggcggcggaggaggagccaagtgccgcgagacgaaggcgaggagttgcctgaggaagctgctgcggaattttaggctgcgattcaagctgtag
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| Protein seq | MRIMVRTLRGDRVALDVDGATTTVAQVKGMVMARERIAVAMQRLFFAGRCLDDDHRTLADYGVRHDSVVFLSLRLATDAYQYVQISQRRRRAFLRFCFDEPIDRSIYGRTEMHNVRLMQPETATAKQEMHQQQQQQLHVHVAADDEEKAIKRKPVSRRALRKILSRLQVDAWTSQHDAKFLDLLLRHTGGGGGARNVGELTGEDWSSIRAELNAATGSGFPVEELQRRLGEFRREFEAASRIKNHPRFSYDPRRRVVVAKQADWKNYILENPEAAAYEGRSPRHLGRLRAIFSGDGGGGGGGGAKCRETKARSCLRKLLRNFRLRFKL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0038620 | OsLiXu_03g0038620.01 | Chr03 | 36754049 | 36755126 | - | NAM | ||
| CDS seq | atgaggatcatggtgcgcacgctgcgcggggaccgggtggcgctcgacgtggacggcgccacgacgacggtggcgcaggtcaagggcatggtcatggcccgggagcgcatcgcggtggccatgcagcggctgttcttcgccggccggtgcctcgacgacgaccaccgcacgctcgcggactacggcgtgcgtcacgactccgtcgtcttcctcagcctccgcctcgccaccgacgcctatcagtacgtgcaaatttcacaacgacgacggcgagcattcttacgattttgttttgacgaaccgatcgatcgatcgatctatggcaggacggagatgcataatgtgcggttgatgcagccggagacggcgacggcgaagcaagaaatgcatcagcagcagcagcagcagttgcatgtccatgtcgccgccgacgacgaggagaaggcgatcaagaggaagccggtgtcgcggcgcgcgctccgcaagatcctgtcgcggctgcaggtggacgcgtggacgagccagcacgacgccaagttcctcgacctgctgctgcgccacacgggcggcggcggcggcgcgaggaacgtgggcgagctcaccggcgaggactggtcatccatccgcgccgagctgaacgccgccaccgggtccggcttccccgtggaggagctccagcggcggctgggcgagttccggcgggagttcgaggcggcgagccggatcaagaaccacccccggttcagctacgaccctcgccgccgcgtggtcgtcgccaagcaggccgactggaagaactacatactggagaatccggaggcggcggcgtacgaggggaggagcccgcggcatctgggccggctccgagcaatcttctccggcgacggcggcggcggcggcggaggaggagccaagtgccgcgagacgaaggcgaggagttgcctgaggaagctgctgcggaattttaggctgcgattcaagctgtag
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| Protein seq | MRIMVRTLRGDRVALDVDGATTTVAQVKGMVMARERIAVAMQRLFFAGRCLDDDHRTLADYGVRHDSVVFLSLRLATDAYQYVQISQRRRRAFLRFCFDEPIDRSIYGRTEMHNVRLMQPETATAKQEMHQQQQQQLHVHVAADDEEKAIKRKPVSRRALRKILSRLQVDAWTSQHDAKFLDLLLRHTGGGGGARNVGELTGEDWSSIRAELNAATGSGFPVEELQRRLGEFRREFEAASRIKNHPRFSYDPRRRVVVAKQADWKNYILENPEAAAYEGRSPRHLGRLRAIFSGDGGGGGGGGAKCRETKARSCLRKLLRNFRLRFKL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0808400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g59370 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0808400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0039070 | RBH | 0.0 | 3.640273 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0038740 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0038800 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0039090 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0038650 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0577000 | RBH | 0.1800685 | 0.2970325 | 0.0566565 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0038410 | RBH | 0.0 | 0.081255 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0579500 | RBH | 0.1635105 | 0.0772535 | 0.119899 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0038990 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0038950 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0038580 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0031840 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0038670 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G038440 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0038210 | RBH | 0.0 | 0.0 | 0.0 |
