Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0037300 | OGI:03092300 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:35848612-35852565 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acgtttaggcaacatgggcatgaagtgcaagagatatggagtatacgatattcagcctgaattcttacatgagttgagtttgcaaaagaatacaatcccatcccaataccgaaaactcaactctacagagctcttatatgtacagttccaaggatttacaaaatcaagtccgtcataaggcctatgctacaacgaattgacttgaatagctttgtagtgaggaggagggtaaaagggcagctgaagtactcgcttgaatgggcagatacgggatacacgtcaccaaagcactattgatccagaatcaacctaatttttttgtttttctttctccagtgttgtaacgcaggcccagcttccttcatttggtgcagttaccatatcttgttcttcaaccaaaagagcatcaaaactacaccgatcacaatggcaacgggggcatacttccgaatcaaggcctgaaatccaaaaggtttgtgcataccataaatgagacgctgaaagatgtagataaaatgtagacaaatgcagattaaaattaagggcaacgcatgacaaacattatgttacaaactacgaaatgccaatgtggatacaatgtatagtagtcatgacttctgaaccgacatgctgctgaaggaaagccttcagataaatgatggagagaactcctgagccaccacccacaactgaataatgtttgggtgcttctataatctgatgaaactgaccagctgcccatagatagtgaactaataaacacaaataaaaaacaacattttattttattagccaaagggtgcagcttctaacagtaggctcatggagatgtttgttactgttgcagcaacaaccaattatagtgactatacttattttgatcttgaaagtaaaggcgattttaatgtcatacttgatgctaattaaagtgcatagcacatgctgaagaaattgatccataaacaattttaaatgttgtttcacttgtttgagtaacatcaataccgatgtctctaataattctaatgaaaaatgctcaagctcagctgacaaatgcatctgcaaaaaatagtgcatgcaattgtgtaaatggattacctggcgattgagatccttagccttatctgcatacattcttgtgtcagaagtcaacctagttgacatttcagtgacctctgcaagattgagcaatattttgattcaatcaaaccataatatcagttatcacacaatgaaatgcaaaggaaagcgaaaaggtaaaggtgggtataaatctttagaaacatcagaatcagggcagttaaatgcaaaaaagaaaaatgaaggtgcaatgaaaattaaaaaagaaagactaagtcagtaattcgatattattgtaaataagcttttgaacaaatatatgaaagtaattgaaaggacaaggtcctccatagtaagcctgattcatgcatgttacagaaatctgatggtttattgtaacaggacatatacggtaatgttagaaccaagaggtatttgcaaacttacggtctagcttttcaccgacaccaagaacttcttgaacattgcgagtcataatctgatgcacctcatagagctcatcattcaatttcgcaagattcctctgggttctagtgtccaaataaagtttcttagtcttctgaatgaatgtgtctaggtagaaagaggaataagttgtgaaccagttgaacttagacaaatgaaaatattgctggaattaaattctaaaaacataccaaacttaataaaggcatatggccttgcagctgtttcgatttgactgccattgactctttcaaattcgtttttcagatcttctaggtactggaatgcaagtttctttggataagaacggtcacacattgtcagataacatactcgcccctcaatgatgtaactgtttattttaattaaggttcaacaagatcatactgcgatgaactgagcaaaccaatagaagctaaaaaatgcattacaagaatatcattagctgacagctgaatgccatcttttcgcgacagaacacaatgcaagtagcaggttaaataagattatgatcttaaagttagttttgataaatggcctcacatactaataacgagatcaacaagtgtatcaaataagtacaacatgcttgcaagttgtaagatgctaaaaaataattgaatgctatagaaaagtagagtagctattgtatgattgttaatttaacctagacaatcacataggttcgtcaaatgtttaccaatgttcttgtttacttgcgattaatacaactatcctacatacgatgaaatcttgatcaccagaaaagaaatgtaatgtttcatggatgcaacaagcgaacttgatcaacaatataaaagaatgactatgcatgttcagatgtaaatgtttagcacccagatatgctatatcacacataatgcatggatttaaaagaatggaacaaattcaacagtcattaacgatgcttggaaataaaaaaaccacacagaacataaggatactgaaaaaagtatggcccagtctcaattgacatccgcgaggcttcatgttgcccctttgataagtttttgaaaagaagtttagcttgctgcttgtaaaagtcagcgtccttctgatcccgtccatcatccaacccttctgccagtggaaggccatcagtgacacgtgctaccattgtcagcttcaccattttgtcaagaaggccagaaaccactgcaaactgcaccagaataccaaatgaacctgccaggaaaaaaaggtgcttcaggtgtagttccaacttcaagtgttatttatacttcataagagtacatacttagttttctagtcaacatataaataagcaatccaggaaagaaaccatcaccaccgcccaagcatttcatgtcattttgcatttttgcggtatcacatttcttagggcaattttagaatcacatattttccggtgactaaggatgactaatccattgcacaaatccgtatcaacagcaagtaaaaaattggaccctaattcatttatacgaaatatattgtttcaatctaaacaaattttaataggaatgccaccattaaacacgtcacatagcagctcgcaaacataacctaccactgggaaaattcataaatgcaggggcaaaacattcaaatcctatttttaattcacctagtacccagaacagtcaattccatgatttatatactacattaataactcccctagatgaacgaaacctaatttttccaatactaatgggtgctcgtactacaacatctgcgtcatcatgcatgagacatgacttagacaccacatgaccaaatgcatctaactccactcccctattgccattactcaagcacacaacactaaatgcgtcaatcagcaccccgaaccctgcaaacaggacaatccaaatccattgaatcaatttggcaattagcacgatccgatcctccggagcaaactacgaggccaaaaatagctgaaatcacgatcgaaccaatcaacccacgtaaaaaaaaataatcaacaaaaaaaaagagcaaagaaaacaccatctaaaataccgcgagatccacacccatgttctaggcttcagcgagagctgcgagaccaagcagctaccagctacacatatcacactgcaggccagcagaaactagatcgaaccgcgagtagtcggaaggggggaaaagcgcaagcgatcgcgtcaggtccgccggatctggacgagctggagcgaaagcgagaggagtagatcgagggagaggggtggagcgtacaggaaggagggagttggtcgtctccgggaagagccggagaggaggaggaggaggagatcgcggccggcggagtcgccggagcccggaagtttcgagagcccaccgccgtttcgtcctcttcacttctcttcttttcctctt
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| CDS seq | atggtgaagctgacaatggtagcacgtgtcactgatggccttccactggcagaagggttggatgatggacgggatcagaaggacgctgacttttacaagcagcaagctaaacttcttttcaaaaacttatcaaaggggcaacatgaagcctcgcggatgtcaattgagactgggccatacttttttcattacatcattgaggggcgagtatgttatctgacaatgtgtgaccgttcttatccaaagaaacttgcattccagtacctagaagatctgaaaaacgaatttgaaagagtcaatggcagtcaaatcgaaacagctgcaaggccatatgcctttattaagtttgacacattcattcagaagactaagaaactttatttggacactagaacccagaggaatcttgcgaaattgaatgatgagctctatgaggtgcatcagattatgactcgcaatgttcaagaagttcttggtgtcggtgaaaagctagaccaggtcactgaaatgtcaactaggttgacttctgacacaagaatgtatgcagataaggctaaggatctcaatcgccaggccttgattcggaagtatgcccccgttgccattgtgatcggtgtagttttgatgctcttttggttgaagaacaagatatggtaa
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| Protein seq | MVKLTMVARVTDGLPLAEGLDDGRDQKDADFYKQQAKLLFKNLSKGQHEASRMSIETGPYFFHYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGSQIETAARPYAFIKFDTFIQKTKKLYLDTRTQRNLAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVTEMSTRLTSDTRMYADKAKDLNRQALIRKYAPVAIVIGVVLMLFWLKNKIW |
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| Function | 25.3 kDa vesicle transport protein [UniProtKB/Swiss-Prot:Q94AU2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0037300 | OsLiXu_03g0037300.02 | Chr03 | 35848612 | 35852033 | - | NAM | ||
| CDS seq | atggtgaagctgacaatggtagcacgtgtcactgatggccttccactggcagaagggttggatgatggacgggatcagaaggacgctgacttttacaagcagcaagctaaacttcttttcaaaaacttatcaaaggggcaacatgaagcctcgcggatgtcaattgagactgggccatacttttttcagtatccttatgttctgtgtggtttttttatttccaagcatcacacattcattcagaagactaagaaactttatttggacactagaacccagaggaatcttgcgaaattgaatgatgagctctatgaggtgcatcagattatgactcgcaatgttcaagaagttcttggtgtcggtgaaaagctagaccaggtcactgaaatgtcaactaggttgacttctgacacaagaatgtatgcagataaggctaaggatctcaatcgccaggccttgattcggaagtatgcccccgttgccattgtgatcggtgtagttttgatgctcttttggttgaagaacaagatatggtaa
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| Protein seq | MVKLTMVARVTDGLPLAEGLDDGRDQKDADFYKQQAKLLFKNLSKGQHEASRMSIETGPYFFQYPYVLCGFFISKHHTFIQKTKKLYLDTRTQRNLAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVTEMSTRLTSDTRMYADKAKDLNRQALIRKYAPVAIVIGVVLMLFWLKNKIW |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0037300 | OsLiXu_03g0037300.04 | Chr03 | 35848612 | 35852033 | - | NAM | ||
| CDS seq | atggtgaagctgacaatggtagcacgtgtcactgatggccttccactggcagaagggttggatgatggacgggatcagaaggacgctgacttttacaagcagcaagctaaacttcttttcaaaaacttatcaaaggggcaacatgaagcctcgcggatgtcaattgagactgggccatacttttttcattacatcattgaggggcgagtatgttatctgacaatgtgtgaccgttcttatccaaagaaacttgcattccagtacctagaagatctgaaaaacgaatttgaaagagtcaatggcagtcaaatcgaaacagctgcaaggccatatgcctttattaagtttgacacattcattcagaagactaagaaactttatttggacactagaacccagaggaatcttgcgaaattgaatgatgagctctatgaggtgcatcagattatgactcgcaatgttcaagaagttcttggtgtcggtgaaaagctagaccaggtcactgaaatgtcaactaggttgacttctgacacaagaatgtatgcagataaggctaaggatctcaatcgccaggccttgattcggaagtatgcccccgttgccattgtgatcggtgtagttttgatgctcttttggttgaagaacaagatatggtaa
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| Protein seq | MVKLTMVARVTDGLPLAEGLDDGRDQKDADFYKQQAKLLFKNLSKGQHEASRMSIETGPYFFHYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGSQIETAARPYAFIKFDTFIQKTKKLYLDTRTQRNLAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVTEMSTRLTSDTRMYADKAKDLNRQALIRKYAPVAIVIGVVLMLFWLKNKIW
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0037300 | OsLiXu_03g0037300.05 | Chr03 | 35848612 | 35851414 | - | NAM | ||
| CDS seq | atggcagtcaaatcgaaacagctgcaaggccatatgcctttattaagtttgaagactaagaaactttatttggacactagaacccagaggaatcttgcgaaattgaatgatgagctctatgaggtgcatcagattatgactcgcaatgttcaagaagttcttggtgtcggtgaaaagctagaccaggtcactgaaatgtcaactaggttgacttctgacacaagaatgtatgcagataaggctaaggatctcaatcgccaggccttgattcggaagtatgcccccgttgccattgtgatcggtgtagttttgatgctcttttggttgaagaacaagatatggtaa
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| Protein seq | MAVKSKQLQGHMPLLSLKTKKLYLDTRTQRNLAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVTEMSTRLTSDTRMYADKAKDLNRQALIRKYAPVAIVIGVVLMLFWLKNKIW |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0037300 | OsLiXu_03g0037300.03 | Chr03 | 35848612 | 35852033 | - | NAM | ||
| CDS seq | atggtgaagctgacaatgcaatattttcatttgtctaagttcaactggttcacaacttattcctctttctacctagacacattcattcagaagactaagaaactttatttggacactagaacccagaggaatcttgcgaaattgaatgatgagctctatgaggtgcatcagattatgactcgcaatgttcaagaagttcttggtgtcggtgaaaagctagaccaggtcactgaaatgtcaactaggttgacttctgacacaagaatgtatgcagataaggctaaggatctcaatcgccaggccttgattcggaagtatgcccccgttgccattgtgatcggtgtagttttgatgctcttttggttgaagaacaagatatggtaa
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| Protein seq | MVKLTMQYFHLSKFNWFTTYSSFYLDTFIQKTKKLYLDTRTQRNLAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVTEMSTRLTSDTRMYADKAKDLNRQALIRKYAPVAIVIGVVLMLFWLKNKIW |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0037300 | OsLiXu_03g0037300.01 | Chr03 | 35848612 | 35852033 | - | NAM | ||
| CDS seq | atggtgaagctgacaatggtagcacgtgtcactgatggccttccactggcagaagggttggatgatggacgggatcagaaggacgctgacttttacaagcagcaagctaaacttcttttcaaaaacttatcaaaggggcaacatgaagcctcgcggatgtcaattgagactgggccatacttttttcattacatcattgaggggcgagtatgttatctgacaatgtgtgaccgttcttatccaaagaaacttgcattccagtacctagaagatctgaaaaacgaatttgaaagagtcaatggcagtcaaatcgaaacagctgcaaggccatatgcctttattaagtttgacacattcattcagaagactaagaaactttatttggacactagaacccagaggaatcttgcgaaattgaatgatgagctctatgaggtgcatcagattatgactcgcaatgttcaagaagttcttggtgtcggtgaaaagctagaccaggtcactgaaatgtcaactaggttgacttctgacacaagaatgtatgcagataaggctaaggatctcaatcgccaggccttgattcggaagtatgcccccgttgccattgtgatcggtgtagttttgatgctcttttggttgaagaacaagatatggtaa
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| Protein seq | MVKLTMVARVTDGLPLAEGLDDGRDQKDADFYKQQAKLLFKNLSKGQHEASRMSIETGPYFFHYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGSQIETAARPYAFIKFDTFIQKTKKLYLDTRTQRNLAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVTEMSTRLTSDTRMYADKAKDLNRQALIRKYAPVAIVIGVVLMLFWLKNKIW
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0037300 | OsLiXu_03g0037300.06 | Chr03 | 35848628 | 35852565 | - | IsoSeq | ||
| CDS seq | aagaggaaaagaagagaagtgaagaggacgaaacggcggtgggctctcgaaacttccgggctccggcgactccgccggccgcgatctcctcctcctcctcctctccggctcttcccggagacgaccaactccctccttcctgttcatttggtattctggtgcagtttgcagtggtttctggccttcttgacaaaa |
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| Protein seq | KRKRREVKRTKRRWALETSGLRRLRRPRSPPPPPLRLFPETTNSLLPVHLVFWCSLQWFLAFLTK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 35850271 | 35850369 | - | OsLiXu_03g0037300.01,OsLiXu_03g0037300.04,OsLiXu_03g0037300.06 | OsLiXu_03g0037300.04,OsLiXu_03g0037300.05,OsLiXu_03g0037300.06,OsLiXu_03g0037300.01 | All |
| AF | Chr03 | 35851383 | 35852565 | - | OsLiXu_03g0037300.02,OsLiXu_03g0037300.03,OsLiXu_03g0037300.04 | OsLiXu_03g0037300.04,OsLiXu_03g0037300.03,OsLiXu_03g0037300.06,OsLiXu_03g0037300.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.344672 | 1.004277 | 2.646560 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0791500 | RBH | 1.121985 | 0.0 | 6.216726 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g57760 | RBH | 0.743989 | 0.0 | 1.548262 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0791500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0037730 | RBH | 0.812264 | 19.766748 | 9.900629 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0037420 | RBH | 0.565047 | 3.015321 | 5.106352 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0037480 | RBH | 0.000000 | 4.902225 | 10.945322 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0037780 | RBH | 0.114549 | 0.730649 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0037280 | RBH | 8.998898 | 44.327568 | 17.901236 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0561900 | RBH | 6.9168235 | 14.8187435 | 27.3724755 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0037080 | RBH | 0.286444 | 0.981367 | 2.790126 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0563800 | RBH | 9.891476 | 11.846511 | 22.829763 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0037620 | RBH | 0.402389 | 0.281421 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0037630 | RBH | 0.400994 | 22.962570 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0037230 | RBH | 2.661843 | 19.016506 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0006770 | SBH | 0.596938 | 1.837884 | 2.213343 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0037310 | RBH | 0.066704 | 3.005231 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G037090 | RBH | 1.432660 | 7.335208 | 4.096899 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0036870 | RBH | 2.679270 | 13.112545 | 5.128749 |
