Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0030930 | OGI:03079690 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:30995799-30996053 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacctcctcaccccgccgccgccgccgccgccgctggcgcgcgggtaaaaggcgtgggtggggcgctgcgctggagcagttgactcgaggaagcagcaggaattgaccggtgctgccggggcggagcgcgtgcggccattttttttaggcgcgacgcaacttggttggttaggtggatccccctcctttttacctccccatctctggataagacggaattcggcgaccttctcctccggatcgcatccgatcat |
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| CDS seq | atgatcggatgcgatccggaggagaaggtcgccgaattccgtcttatccagagatggggaggtaaaaaggagggggatccacctaaccaaccaagttgcgtcgcgcctaaaaaaaatggccgcacgcgctccgccccggcagcaccggtcaattcctgctgcttcctcgagtcaactgctccagcgcagcgccccacccacgccttttacccgcgcgccagcggcggcggcggcggcggcggggtgaggaggtga |
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| Protein seq | MIGCDPEEKVAEFRLIQRWGGKKEGDPPNQPSCVAPKKNGRTRSAPAAPVNSCCFLESTAPAQRPTHAFYPRASGGGGGGGVRR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0030930 | OsLiXu_03g0030930.01 | Chr03 | 30995799 | 30996053 | - | NAM | ||
| CDS seq | atgatcggatgcgatccggaggagaaggtcgccgaattccgtcttatccagagatggggaggtaaaaaggagggggatccacctaaccaaccaagttgcgtcgcgcctaaaaaaaatggccgcacgcgctccgccccggcagcaccggtcaattcctgctgcttcctcgagtcaactgctccagcgcagcgccccacccacgccttttacccgcgcgccagcggcggcggcggcggcggcggggtgaggaggtga
More
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| Protein seq | MIGCDPEEKVAEFRLIQRWGGKKEGDPPNQPSCVAPKKNGRTRSAPAAPVNSCCFLESTAPAQRPTHAFYPRASGGGGGGGVRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.550511 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0031520 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0031220 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0031310 | RBH | 0.825777 | 0.000000 | 1.564756 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0031400 | RBH | 0.148165 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0031100 | RBH | 4.091644 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0487200 | RBH | 49.808029 | 27.6360655 | 141.5352935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0030770 | RBH | 0.350782 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0031160 | RBH | 0.0 | 0.143773 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0031210 | RBH | 0.195647 | 3.786471 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0031170 | RBH | 0.0 | 13.581235 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0030960 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G030950 | RBH | 0.291324 | 0.0 | 1.552813 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
