Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0027130 | OGI:03070420 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:27215197-27220947 | ||||||||
| Gene Symbol | HB4, OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3 | ||||||||||
| DNA seq | accatatagatcatttagcagtactagattcaaacggaagttcatgatgatagaaactgggaggttcttgacatgttcatggtgatgatacacaaaagcaatactacataaggtctttaggacagacaaacaagagggggatcgattctactagggtggttctcagacgaatgaccagttgacgaacatgaaggcgaggcagtgcggcgtgtcgtcgtcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgcacacgccgcccgggaggtaggcgaaaccctggagtggaaacagttttgtgctgttcggttacaagcatcacagaagggtttgtccaaaggcttgtagcattaggaacaatagtccatacctgctgcatgatcttggggaactctgtacatagcgccttccggccatcatcatcaaggatcttctcgagcgagatgtcctggagagcaatcagcgtcgtctccagcatgtcgaggccggcttggttggcgaaggtgaacacaggagcagcctgaatggtaagcagtagccagaatttgtttgttagcctagatggcaatgtaaatatgtatcagcgacaatacaaaaggcgcaccacactgaccttcagggagcagcacatgattgaatcagagtgttgccacattgctttcaaggaagaatccgtgctttgtgagtctgtgcgaaggagatccgctccatgtgaatctgaaattttaaagcaaaccaaattaccacattgcaaagaattgaaaatgatccatactatcatcaatgactgtgaattactatcacttctctatgcaccatcatatcccaggataatactgacaaattggtgtgctaatagtaggaataaatgttcaaaatcaaatatagtccatggtatagaacaaagatagtcataccggtagctcctcccaatccaccttgcaagcgtatgggcctcaggagatcctggagggttctttgtttcaatctgtccaccaagacgtggagctattgccatggccactctctgcactgatgccaccacggtccggacatactgcctggccattgccgctacgctttcacgaaggtggttttcatatgagaattggaaagctatggtcaggaccgatcttgtgttgcaggtgctcgaggtgtcactagtagcccgtgtagtcccacccgatccaacctcaagagtagatgccaggtcaagtgtgcgtgtcgcagatggtgcatcctgtagtagggtacataataccgaaccattgtttagtttaggcgatcggacaagatccagctgccagagcaaaagaaattacactaaccgtcttgccatccagtggtatcacacggaagcctgagggtagcagtggtgcatcatcagcaaaagattcgtcaatgggcaaagacaagctgggcacatgcacccgcagcattttcatctacaccgctgcacagctgaaatagaatatagtacctcatcaagttaatccaacacagattgaatgaaaaattgcacactaatgctctctgaaaatatacctgcagaaggtacatatctcttgatagaacgacctcatcatggcagaggctgtgtccctcaagcctaatgacctccaggaactgcaatttaaagggttagttcgaatattggttcgcaagtagtgctacaaagcaattataagaagcaaagctaacatcagttacctcttcatgctctaaggtgtgcgcaagtggcaatataacctgactgcccataaaccaccagctcgcagaccaggaactgcatatggactagccctcaacgcagcagcagaataagcatcaacaccaggatcagcccattcagagcggtgctccctcaaaaatcgcactaggagagcaggtggtacattctacacaatgaaaacaagcttgtcaggtcataataaacaactcaactactcatgcacaaattacctagatggattatgataaagacctgtaacagcatagatgccttgcacacaagatgccgcctccaattgcagaaaacagctgggaggagttgacatgagatccaacaagcttgtttggagatgagttaaaagttgtcacatcctcagcaccatcgctgctcatcagtgaccagccatcatccgggaatccattgacagcatcattgaagcctctgcaaatagcatcgaggacgttagccatagcacgcatgggtatctctttcacatagtgacacataagcactactgcaaacctgcttagcctctgactaaatgttctcagaactgctggctgacggccccctccatagggcatttccccacttgattcatgtgcaatttgcctaatgtgacgcagtgcctgtaaaagcaaaccagcaattgtcaggcatcactgatatattaacacaatacagaacacgtagtaccaatgaaatcttaacacaatgcaactgttaaacatacagcaattgtcatcttctgcgcaaggatcttaggagattcataaagtggtcgaaggacctcaggcacactccaagcctgcaacaagaaatatgttattgctaagagtccacaaatttgaccaaagtgtccaaaaaatggatggggacaaatgtctcttcagctcacatccaaatcacatgatccacaatgtgaatcatggaaccacccccctcacatgggcggatcaaatagccgctaggaagcacctcggctctgacaaagtttggagtgttaggtcctgatgggccaccagtggattgagtcaatgatctctcacagatctacagaacaaggtagtgagcaacagttaccaactctgaacacaaacatattaagctaagccaattaagtcacacaaaacacaactgaaaacaattcagtagaaatggaagcaccgaacaatcaaaggaaagaaggaataccacaagacttccatcctcaagaccactagtgtaacggagtatccagaagtcacgtggtgccgccaaagttgtcggtgcataagtctgataaattgaattgcagtaacagtcagtttacagctatagacaacagagaggacagtatcaaagcgcacctaatgttaaccatgtcgtaaaaggacgcatacctgcatgtagataagctcaatagttccaccattacccgtagggatacatggagcacatccacacaccggcaatcgcgataccaagatgggcgatccttaggatctcagcaacctatgcagtagtctattaggagtgtctgccgaatggaaacattgggctgtgtgatgatgaaaaacaacatacctttgtgggctcaaggctcacaaggccgcaagctcgtgctgctacgccactacaattgtgcgaaacagcgatgattccaatggaatccggaccaggctgtaacaaattccacctttaagtaattctccaaaaaactgaagtaataacacacaattctgcctctgcgataattacattaccttcatcccaaccatttgcacccaatcgacagcagtacccgtcgctttcgacaggactctgccaaggtctcctcagctatagcgagtagactgtaagaaacaaagagttgcatcaaacttaagcaaaagatcgcgcaatgcaaggtaggcatacaaatgttcttagaaaagttaaggacactagcactgtaattacccagctggttgttcgcgtccctttgcggacgcgtggctgctgggttttgctgttggtggtgttgaccacttgtaaccacagactcacagctcgtgtctgtagttgccacagaaggctgtaaaaacatcatagcacacaacattagaggcaggaaccagtaatacgaacaacattaaattaaaaattaaacaccactggaatctatttctaggagatgctaggagcactcagcacgttagtctgttgaacttgaaattagtaactaagcacatcgcttgccattgtagaactcagactcagatcatgcctctgaggcaaacacttgcatatcatgagttatgtctgatgagattagcaaagatgatgaatctcacattatggagctgctgccgcatgtacccgttctcgtaaacgaggcgggacacctgcttctgcagcctgtcattctcctccatcacagcttgttcatcgcagtcaacttcggttcacagtttgcaggcgagatgcctccttgcgctgcttctcgcggcacctgcaaatcacaaaggaaaacatcatcaactgtcggccacaccacaccacacagttacaaaaacatcatttgcaaggaagaaactgtggcaacgatccttaatgtacaagattcgattcaatgctgtgcctcagaacaggcatatcacatcccaggtgaggcatcagcgtgttaggtaaagggcaaggcatcccagctgcacattttcatggcatgAaagcaactaatgactgataagcaggaacaaataatagtacgaattattattattttttctcagctgaagatgatgatgtatacatccttgcaacaccaaatctggcttaaatctgaccgctgcgttgggtaagatgaccctttaactttgcttttacagttgttcttgcaatgccaaccaacataagattagcaatcatgtctaaatgtcaagacagcctctgagaatcacatcagctcgcgaggttctagctcaaagcagagcactcaagagtgaaaagactcatccgcttctgcgtcccccaccacgaaaccacgacacaaacggcAaaaaaaaaaaagaataagaaaagaaaattcgagatggcattcaaagaatagaccagaactcgatcacaaaagaaaaactcaggcatcttagacaaaatagccaacgcgaaactcagatttttggcacaacaatctattactaggtgcctgcatccacatactaaaccaaacatacgaatcctgaaaaggacaagaaagatgaaagccaaaacatttttttccctctaataagaaacgatatttttttcttctttaatggaaaacataaacacagaaaatcttaagagccaagagaagccaagaaagcgaaattcatgtggaaggaagcagtgagcagcagatcgagagaagtggagagaagaaggagaaggcacgcacctgcggttctggaaccagaccttgatctgcttgggctcgatgttgctgagtatggggcactcgcggatgagctgctggcggcggagcgagctgggcttggggcactcgccgtagacccgctccagcgcctccacctgctccGgggtgtagcgcacgtacttgcccgtgtccacctgcggcgcccctccgccgccaggcgacgacctgtcctgcctccccactccatgcaccgccgccaccatcgccgccgccatccccgtcgacccttctccTtcttctcccgcctccgccgacgcgctacgacgacgaccagggccaccaccaccgccgaccgagcgcagtagttggtcgcagtagtagcaacaggagccacggccacgggcgccgccgcgtcatgcctccaGggagagactgccgccagctcccgcgcgcgccatggcggtcggaggtgcttcttgcgagcggaggcgcgtggtggtggtgaggaggaggaggaggtgggaagggaaaggtagcgagagagaaGggaaggacggtagaggaggagagagaaggggtgggggttggtttaatagtggtggAcaggggaagc
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| CDS seq | atggaggagaatgacaggctgcagaagcaggtgtcccgcctcgtttacgagaacgggtacatgcggcagcagctccataatccttctgtggcaactacagacacgagctgtgagtctgtggttacaagtggtcaacaccaccaacagcaaaacccagcagccacgcgtccgcaaagggacgcgaacaaccagctgggtaattacagtgctagtgtccttaacttttctaagaacatttctgaggagaccttggcagagtcctgtcgaaagcgacggcctggtccggattccattggaatcatcgctgtttcgcacaattgtagtggcgtagcagcacgagcttgcggccttgtgagccttgagcccacaaagacttatgcaccgacaactttggcggcaccacgtgacttctggatactccgttacactagtggtcttgaggatggaagtcttgtggcttggagtgtgcctgaggtccttcgaccactttatgaatctcctaagatccttgcgcagaagatgacaattgctgcactgcgtcacattaggcaaattgcacatgaatcaagtggggaaatgccctatggagggggccgtcagccagcagttctgagaacatttagtcagaggctaagcagaggcttcaatgatgctgtcaatggattcccggatgatggctggtcactgatgagcagcgatggtgctgaggatgtgacaacttttaactcatctccaaacaagcttgttggatctcatgtcaactcctcccagctgttttctgcaattggaggcggcatcttgtgtgcaaggcatctatgctgttacagttcctggtctgcgagctggtggtttatgggcagtcaggttatattgccacttgcgcacaccttagagcatgaagagttcctggaggtcattaggcttgagggacacagcctctgccatgatgaggtcgttctatcaagagatatgtaccttctgcagatgaaaatgctgcgggtgcatgtgcccagcttgtctttgcccattgacgaatcttttgctgatgatgcaccactgctaccctcaggcttccgtgtgataccactggatggcaagacggatgcaccatctgcgacacgcacacttgacctggcatctactcttgaggttggatcgggtgggactacacgggctactagtgacacctcgagcacctgcaacacaagatcggtcctgaccatagctttccaattctcatatgaaaaccaccttcgtgaaagcgtagcggcaatggccaggcagtatgtccggaccgtggtggcatcagtgcagagagtggccatggcaatagctccacgtcttggtggacagattgaaacaaagaaccctccaggatctcctgaggcccatacgcttgcaaggtggattgggaggagctaccggtatgactatctttgttctataccatggactatatttgattttgaacatttattcctactattagcacaccaatttgtcagtattatcctgggatatgatgattcacatggagcggatctccttcgcacagactcacaaagcacggattcttccttgaaagcaatgtggcaacactctgattcaatcatgtgctgctccctgaaggctgctcctgtgttcaccttcgccaaccaagccggcctcgacatgctggagacgacgctgattgctctccaggacatctcgctcgagaagatccttgatgatgatggccggaaggcgctatgtacagagttccccaagatcatgcagcagggtttcgcctacctcccgggcggcgtgtgcgtgtcgagcatggggcggccggtgtcgtacgagcaggcggtggcgtggaaggtcctgagcgacgacgacacgccgcactgcctcgccttcatgttcgtcaactggtcattcgtctga
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| Protein seq | MEENDRLQKQVSRLVYENGYMRQQLHNPSVATTDTSCESVVTSGQHHQQQNPAATRPQRDANNQLGNYSASVLNFSKNISEETLAESCRKRRPGPDSIGIIAVSHNCSGVAARACGLVSLEPTKTYAPTTLAAPRDFWILRYTSGLEDGSLVAWSVPEVLRPLYESPKILAQKMTIAALRHIRQIAHESSGEMPYGGGRQPAVLRTFSQRLSRGFNDAVNGFPDDGWSLMSSDGAEDVTTFNSSPNKLVGSHVNSSQLFSAIGGGILCARHLCCYSSWSASWWFMGSQVILPLAHTLEHEEFLEVIRLEGHSLCHDEVVLSRDMYLLQMKMLRVHVPSLSLPIDESFADDAPLLPSGFRVIPLDGKTDAPSATRTLDLASTLEVGSGGTTRATSDTSSTCNTRSVLTIAFQFSYENHLRESVAAMARQYVRTVVASVQRVAMAIAPRLGGQIETKNPPGSPEAHTLARWIGRSYRYDYLCSIPWTIFDFEHLFLLLAHQFVSIILGYDDSHGADLLRTDSQSTDSSLKAMWQHSDSIMCCSLKAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEFPKIMQQGFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV |
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| Function | Homeobox-leucine zipper protein HOX32 [UniProtKB/Swiss-Prot:Q6AST1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0027130 | OsLiXu_03g0027130.02 | Chr03 | 27215197 | 27220947 | - | NAM | ||
| CDS seq | atggcggcggcgatggtggcggcggtgcatggagtggggaggcaggacaggtcgtcgcctggcggcggaggggcgccgcaggtggacacgggcaagtacgtgcgctacacccCggagcaggtggaggcgctggagcgggtctacggcgagtgccccaagcccagctcgctccgccgccagcagctcatccgcgagtgccccatactcagcaacatcgagcccaagcagatcaaggtctggttccagaaccgcaggtgccgcgagaagcagcgcaaggaggcatctcgcctgcaaactgtgaaccgaagttga
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| Protein seq | MAAAMVAAVHGVGRQDRSSPGGGGAPQVDTGKYVRYTPEQVEALERVYGECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0027130 | OsLiXu_03g0027130.01 | Chr03 | 27215197 | 27220947 | - | NAM | ||
| CDS seq | atggaggagaatgacaggctgcagaagcaggtgtcccgcctcgtttacgagaacgggtacatgcggcagcagctccataatccttctgtggcaactacagacacgagctgtgagtctgtggttacaagtggtcaacaccaccaacagcaaaacccagcagccacgcgtccgcaaagggacgcgaacaaccagctgggtaattacagtgctagtgtccttaacttttctaagaacatttctgaggagaccttggcagagtcctgtcgaaagcgacggcctggtccggattccattggaatcatcgctgtttcgcacaattgtagtggcgtagcagcacgagcttgcggccttgtgagccttgagcccacaaagacttatgcaccgacaactttggcggcaccacgtgacttctggatactccgttacactagtggtcttgaggatggaagtcttgtggcttggagtgtgcctgaggtccttcgaccactttatgaatctcctaagatccttgcgcagaagatgacaattgctgcactgcgtcacattaggcaaattgcacatgaatcaagtggggaaatgccctatggagggggccgtcagccagcagttctgagaacatttagtcagaggctaagcagaggcttcaatgatgctgtcaatggattcccggatgatggctggtcactgatgagcagcgatggtgctgaggatgtgacaacttttaactcatctccaaacaagcttgttggatctcatgtcaactcctcccagctgttttctgcaattggaggcggcatcttgtgtgcaaggcatctatgctgttacagttcctggtctgcgagctggtggtttatgggcagtcaggttatattgccacttgcgcacaccttagagcatgaagagttcctggaggtcattaggcttgagggacacagcctctgccatgatgaggtcgttctatcaagagatatgtaccttctgcagatgaaaatgctgcgggtgcatgtgcccagcttgtctttgcccattgacgaatcttttgctgatgatgcaccactgctaccctcaggcttccgtgtgataccactggatggcaagacggatgcaccatctgcgacacgcacacttgacctggcatctactcttgaggttggatcgggtgggactacacgggctactagtgacacctcgagcacctgcaacacaagatcggtcctgaccatagctttccaattctcatatgaaaaccaccttcgtgaaagcgtagcggcaatggccaggcagtatgtccggaccgtggtggcatcagtgcagagagtggccatggcaatagctccacgtcttggtggacagattgaaacaaagaaccctccaggatctcctgaggcccatacgcttgcaaggtggattgggaggagctaccggtatgactatctttgttctataccatggactatatttgattttgaacatttattcctactattagcacaccaatttgtcagtattatcctgggatatgatgattcacatggagcggatctccttcgcacagactcacaaagcacggattcttccttgaaagcaatgtggcaacactctgattcaatcatgtgctgctccctgaaggctgctcctgtgttcaccttcgccaaccaagccggcctcgacatgctggagacgacgctgattgctctccaggacatctcgctcgagaagatccttgatgatgatggccggaaggcgctatgtacagagttccccaagatcatgcagcagggtttcgcctacctcccgggcggcgtgtgcgtgtcgagcatggggcggccggtgtcgtacgagcaggcggtggcgtggaaggtcctgagcgacgacgacacgccgcactgcctcgccttcatgttcgtcaactggtcattcgtctga
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| Protein seq | MEENDRLQKQVSRLVYENGYMRQQLHNPSVATTDTSCESVVTSGQHHQQQNPAATRPQRDANNQLGNYSASVLNFSKNISEETLAESCRKRRPGPDSIGIIAVSHNCSGVAARACGLVSLEPTKTYAPTTLAAPRDFWILRYTSGLEDGSLVAWSVPEVLRPLYESPKILAQKMTIAALRHIRQIAHESSGEMPYGGGRQPAVLRTFSQRLSRGFNDAVNGFPDDGWSLMSSDGAEDVTTFNSSPNKLVGSHVNSSQLFSAIGGGILCARHLCCYSSWSASWWFMGSQVILPLAHTLEHEEFLEVIRLEGHSLCHDEVVLSRDMYLLQMKMLRVHVPSLSLPIDESFADDAPLLPSGFRVIPLDGKTDAPSATRTLDLASTLEVGSGGTTRATSDTSSTCNTRSVLTIAFQFSYENHLRESVAAMARQYVRTVVASVQRVAMAIAPRLGGQIETKNPPGSPEAHTLARWIGRSYRYDYLCSIPWTIFDFEHLFLLLAHQFVSIILGYDDSHGADLLRTDSQSTDSSLKAMWQHSDSIMCCSLKAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEFPKIMQQGFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 27216671 | 27216772 | - | OsLiXu_03g0027130.02 | OsLiXu_03g0027130.01,OsLiXu_03g0027130.02 | All |
| A3 | Chr03 | 27217012 | 27217211 | - | OsLiXu_03g0027130.02 | OsLiXu_03g0027130.01,OsLiXu_03g0027130.02 | All |
| SE | Chr03 | 27217766 | 27218153 | - | OsLiXu_03g0027130.02 | OsLiXu_03g0027130.01,OsLiXu_03g0027130.02 | All |
| SE | Chr03 | 27218236 | 27218525 | - | OsLiXu_03g0027130.02 | OsLiXu_03g0027130.01,OsLiXu_03g0027130.02 | All |
| A5 | Chr03 | 27215943 | 27216144 | - | OsLiXu_03g0027130.01 | OsLiXu_03g0027130.01,OsLiXu_03g0027130.02 | All |
| A5 | Chr03 | 27218620 | 27218742 | - | OsLiXu_03g0027130.02 | OsLiXu_03g0027130.01,OsLiXu_03g0027130.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.279865 | 1.146953 | 0.312468 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0640800 | RBH | 1.112217 | 0.993525 | 1.353170 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g43930 | RBH | 0.685257 | 0.663917 | 0.471316 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0640800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0027650 | RBH | 0.540921 | 25.217335 | 4.848189 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0027380 | RBH | 0.124289 | 3.627829 | 1.376881 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0027450 | RBH | 0.541514 | 24.296297 | 7.734879 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0027470 | RBH | 0.034484 | 0.469535 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0027260 | RBH | 5.376663 | 24.702995 | 10.020669 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0430500 | RBH | 8.437253 | 42.530712 | 66.0320775 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0027020 | RBH | 0.187843 | 0.553652 | 1.069365 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0433000 | RBH | 14.46674 | 30.4015605 | 74.613781 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0027280 | RBH | 0.089139 | 0.278958 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0027320 | RBH | 0.917951 | 17.231941 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0027410 | RBH | 1.522278 | 19.837023 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0012930 | SBH | 0.164441 | 0.0 | 1.225534 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0027090 | RBH | 0.226832 | 19.125120 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G027100 | RBH | 0.281050 | 4.515250 | 4.091350 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0027100 | RBH | 1.154661 | 22.885286 | 5.341584 |
