Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0026970 | OGI:03070140 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:27040975-27045312 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgtcgagtaccagcgacatccccgaggggagggagaagctgaagaggtcagggagtctggggagcagcgacacggcgtacgtgcgcgccgacaagatcgatctcaccagcctagatatccagctcgagaagcagcttaccaagacctGGggcaaggccaatctcaaggcgcatggccccaaggaggactgggagatcgacctcgctaagctcgagatccggtacgtcattgctcaggggacctacggcaccgtgtatcgcggcacgtatgatGgccaagatgttgcaggtatctgtcactcttatcagactcTtttttttgttacaatgtattggaaaatgtgaatggacgttgctcgattaggagctgatgttttcaatagatggtcttatggtctcttgtgtatgatggtcagtgacatatgcaattctagctattactattaattgatataaatcttgtagttgtaggtaatatgacacatatgttgaaacaagtagacacaagcttgtttcatacaaggtataggatGgttattattacttacctatctagtatgagctgaacattttgtgTttgtttgtatcaaacacatttatttcatatgcttgatttaactttattacacaggcacaccggatacctcaattgtgtagcaaaagctttacctaacagtcgctcctgtgctttcttttacctgatttagaagtctcttgttaattgttcatgcttcatttaatgcatcatgttttggtgtctaatttggttgggctggtccatattagttgggagaaaaataggatgatagctttgtAaaactgatgtttccgacctaccatgagttcaatataaccaccgcaagttttctctttcattcaatttgaatacttgcacgaataaagacattttatgaaatgccaataattgatagagctccatgtagagtctatccatgataactttatagctaagttgcagtacaatgttttgttggatttgggTtgagaaatgcagcaaaccagaaactatggactggagtatgatatatggttatcatagatgcaagaatttagatgcgcacattcttgtccatgaacaattttaatatattgttctcttccatgagtactttgctttccttgctggcattctggatattctctaagcagtgtcgactgttattatgccttcaacagcgacctgaaatcaggcctgctgtgtttcctcaccaaaaagagcagatcatggtgatgattctctggtccatgcaatctattcaataaaatcaaaaccatgcacatttgaagttattatataactgtaagaaatagtataatccttatttattaaacgaatcgtaagctttttattagtcgcaatgctgaagcaaaccccttcatttagttttccactaatatttctaccagTtgatattctctgtcttctttgaaattgggtaattttcaaaagctgaaaaacattgttttaacattctcaatagtaatttttttactacagcaaataagattttcctccaatctctgaagcttaatattccctactccatgctgcatgtctttttgctggataaagatttgctttctttgaccccatggttgtcaagtcaaggtacccctgaaccgacttatcaacttggtcgactggtccacgacTtggttgtgcacaaacagggaatgcactatatagtctttactactattatactgtactaagcactatatatagtataaactatggactatggagtagccagcaaaacataagccaacaagaaacAaaattaaagtattaaacacaaaaaaaaccaattagcatggtgaattggtgaTtttctacgacaaatctacgattaattgcgcgacttgctgtttggtcgagtcgtggccttctagttgtgtggctttgaccgactttacaactaatctacgactagtcgtgactgatcgtgtggcttgataacagtgtttgacccattgctgattctttcatctgtatatcagaattttatactaggacattttcgtccatggagcatttcagttatgtggaatcctcaccgtgtggatgagggtatttgttagttcaggacaataggccatacagctctctaaaaacatattgctttggtatctaaagtttaattctttgtgcttgtattgtactcacaaatgatatggtgcttcatcatttccattgttttgttcaaaatTAtgtggcgcaagccatatttcatgtagaaagtaaataataattcttcatgatatacagtgaagctgttggattggggagaagatggTtttgccacagaagctgaaactgctgctttgcggacatcatttaagcaggaggttgcagtttggcataagctcagccatcctaatgttacaaaggtgaacatttcccaagcacacctggcttccagcAatcatgcctacattcatatctgatacttcatcccAaaatatagcaACctctatcattcaaaatttttcccaaagcatAgcaacttctccacctatttcttcatataaaccaatcacagccatctcatttaatttttccacctactttcttatctcaaccccttatttaattgcAcctctctccttagtctctgtgaaaaactctagtaatgcttaTATtttGggattgagggagtacatatgcttgttcttgtgttaaattttgtaaagcttctgatccatggtttacggagtattaaaTttgattcaaaTtaacttgtcctgtgttgtcctttttttttttttgactttTgGgttatttcagaagtagctcactgctcacatgttgtattgtctttttgcagtttgttggagcctcaatggggactacagatcttaagattccgaccAacaattccaatgctGgtgcacgcaccaacttgcctgccagagcatgttgtgttGtggTtgaatatctagctggaggaactttgAagcagtatctgataaagaacagtcgacggaagcttgcatacAaagttgtagttcagcttgcattGgatttggccagagggtaattagccttccacctgaatttaTttttgtgccctattcacctctgaatactaattagcTggtgctttgctttgcagattgagctatctccactctagaaagattgtacatcgtgatgtcaaaactgaaaacatgctccttgatacacagagAaaccttaaaattgctgattttggtgttgctcgggtcgAggctcagaatccaaaggatatgactggtgcgacaggcactcttggttatatggccccagaGgtattcacaggcctgatctctttaaatttcttgttttcaagatggacaccttttattgagtgattttccttgtaacacacaaaaaatctattttctttgtatgcattAacaggttcttgatggtaaaccgtacaacAggaaatgtgatgtttatagttttggAatttgcttatgggaaatctattgttgtgacatgccatacccagacctaagttttgccgatgtctcatctgctgttgtccatcaggtttgtcTtgagtctggatatactcctattGtcagtttatctttcttcaCacAaatgattaatcctacttctatggacagaacctgcgcccagacgttcctagatgctgtccaagtgcattcgcAaatatcatgcggaaatgctgggatgcaaatcctgataagcgtcctgatatggatgaggtggtgcagcttctagaggctcttgacacaagcaaaggtggtggcatgataccagatggtcagtcatctggttgcttgtgcttcacaaaggctcgtggtccatagcttccttttcgtgatacagtcttcccttgaccgcgttttgcccatctacatGActgggaaaaaccatggcatatgcttctctttgccacctgtgcagtttggcgcttacaattccccatggctccttgccatctttgtacgttCgttgcagttgtcatatgggcctttgtggtcaacagccTttttctatagcggtgtgatattgtaacagtaattCTtgagagagttggtgacactccgtcacatgtaTtatactagagggttatacacacacataccgggtcgtgcattcttgatacttctacgtttctgtgcgTttggtgccactggtcaatacttcttttgaatcatttttactgttcatatccAaaatgaatacaataaagggcggAaagatgtttgtgTtcagcagatcgcatgttatcaaccttcTAtccgtggtcattttgtgacatgattgtgcttatcttttgtcacctttaaaCctgg
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| CDS seq | atggcgtcgagtaccagcgacatccccgaggggagggagaagctgaagaggtcagggagtctggggagcagcgacacggcgtacgtgcgcgccgacaagatcgatctcaccagcctagatatccagctcgagaagcagcttaccaagacctGGggcaaggccaatctcaaggcgcatggccccaaggaggactgggagatcgacctcgctaagctcgagatccggtacgtcattgctcaggggacctacggcaccgtgtatcgcggcacgtatgatGgccaagatgttgcagtgaagctgttggattggggagaagatggTtttgccacagaagctgaaactgctgctttgcggacatcatttaagcaggaggttgcagtttggcataagctcagccatcctaatgttacaaagtttgttggagcctcaatggggactacagatcttaagattccgaccAacaattccaatgctGgtgcacgcaccaacttgcctgccagagcatgttgtgttGtggTtgaatatctagctggaggaactttgAagcagtatctgataaagaacagtcgacggaagcttgcatacAaagttgtagttcagcttgcattGgatttggccagaggattgagctatctccactctagaaagattgtacatcgtgatgtcaaaactgaaaacatgctccttgatacacagagAaaccttaaaattgctgattttggtgttgctcgggtcgAggctcagaatccaaaggatatgactggtgcgacaggcactcttggttatatggccccagaGgttcttgatggtaaaccgtacaacAggaaatgtgatgtttatagttttggAatttgcttatgggaaatctattgttgtgacatgccatacccagacctaagttttgccgatgtctcatctgctgttgtccatcagaacctgcgcccagacgttcctagatgctgtccaagtgcattcgcAaatatcatgcggaaatgctgggatgcaaatcctgataagcgtcctgatatggatgaggtggtgcagcttctagaggctcttgacacaagcaaaggtggtggcatgataccagatggtcagtcatctggttgcttgtgcttcacaaaggctcgtggtccatag
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| Protein seq | MASSTSDIPEGREKLKRSGSLGSSDTAYVRADKIDLTSLDIQLEKQLTKTWGKANLKAHGPKEDWEIDLAKLEIRYVIAQGTYGTVYRGTYDGQDVAVKLLDWGEDGFATEAETAALRTSFKQEVAVWHKLSHPNVTKFVGASMGTTDLKIPTNNSNAGARTNLPARACCVVVEYLAGGTLKQYLIKNSRRKLAYKVVVQLALDLARGLSYLHSRKIVHRDVKTENMLLDTQRNLKIADFGVARVEAQNPKDMTGATGTLGYMAPEVLDGKPYNRKCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVHQNLRPDVPRCCPSAFANIMRKCWDANPDKRPDMDEVVQLLEALDTSKGGGMIPDGQSSGCLCFTKARGP |
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| Function | Serine/threonine-protein kinase STY13 [UniProtKB/Swiss-Prot:Q9ZQ31] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0026970 | OsLiXu_03g0026970.01 | Chr03 | 27040975 | 27045312 | + | NAM | ||
| CDS seq | atggcgtcgagtaccagcgacatccccgaggggagggagaagctgaagaggtcagggagtctggggagcagcgacacggcgtacgtgcgcgccgacaagatcgatctcaccagcctagatatccagctcgagaagcagcttaccaagacctGGggcaaggccaatctcaaggcgcatggccccaaggaggactgggagatcgacctcgctaagctcgagatccggtacgtcattgctcaggggacctacggcaccgtgtatcgcggcacgtatgatGgccaagatgttgcagtgaagctgttggattggggagaagatggTtttgccacagaagctgaaactgctgctttgcggacatcatttaagcaggaggttgcagtttggcataagctcagccatcctaatgttacaaagtttgttggagcctcaatggggactacagatcttaagattccgaccAacaattccaatgctGgtgcacgcaccaacttgcctgccagagcatgttgtgttGtggTtgaatatctagctggaggaactttgAagcagtatctgataaagaacagtcgacggaagcttgcatacAaagttgtagttcagcttgcattGgatttggccagaggattgagctatctccactctagaaagattgtacatcgtgatgtcaaaactgaaaacatgctccttgatacacagagAaaccttaaaattgctgattttggtgttgctcgggtcgAggctcagaatccaaaggatatgactggtgcgacaggcactcttggttatatggccccagaGgttcttgatggtaaaccgtacaacAggaaatgtgatgtttatagttttggAatttgcttatgggaaatctattgttgtgacatgccatacccagacctaagttttgccgatgtctcatctgctgttgtccatcagaacctgcgcccagacgttcctagatgctgtccaagtgcattcgcAaatatcatgcggaaatgctgggatgcaaatcctgataagcgtcctgatatggatgaggtggtgcagcttctagaggctcttgacacaagcaaaggtggtggcatgataccagatggtcagtcatctggttgcttgtgcttcacaaaggctcgtggtccatag
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| Protein seq | MASSTSDIPEGREKLKRSGSLGSSDTAYVRADKIDLTSLDIQLEKQLTKTWGKANLKAHGPKEDWEIDLAKLEIRYVIAQGTYGTVYRGTYDGQDVAVKLLDWGEDGFATEAETAALRTSFKQEVAVWHKLSHPNVTKFVGASMGTTDLKIPTNNSNAGARTNLPARACCVVVEYLAGGTLKQYLIKNSRRKLAYKVVVQLALDLARGLSYLHSRKIVHRDVKTENMLLDTQRNLKIADFGVARVEAQNPKDMTGATGTLGYMAPEVLDGKPYNRKCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVHQNLRPDVPRCCPSAFANIMRKCWDANPDKRPDMDEVVQLLEALDTSKGGGMIPDGQSSGCLCFTKARGP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.096719 | 5.763913 | 4.613473 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0638800 | RBH | 4.483013 | 5.317281 | 9.205455 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g43760 | RBH | 2.953670 | 3.484259 | 2.304775 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0638800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0027480 | RBH | 2.269479 | 85.961273 | 19.153582 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0027220 | RBH | 0.495090 | 10.769953 | 5.836935 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0027280 | RBH | 5.566848 | 68.779442 | 14.224988 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0027310 | RBH | 0.330593 | 1.263151 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0027090 | RBH | 12.171571 | 46.811157 | 31.208803 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0428800 | RBH | 31.803578 | 67.35009 | 44.440237 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0026860 | RBH | 0.607693 | 3.677733 | 2.936710 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0431600 | RBH | 26.452266 | 62.4890515 | 15.7059105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0027120 | RBH | 0.829328 | 1.053632 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0027160 | RBH | 1.284716 | 27.196436 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0027250 | RBH | 5.211891 | 42.961155 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0019710 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0026930 | RBH | 1.035023 | 24.355181 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G026950 | RBH | 1.715838 | 13.758485 | 6.255644 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0026940 | RBH | 5.281429 | 73.529633 | 23.869387 |
