Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0024190 | OGI:03060690 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:23576464-23581392 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgagcggcagcatcgtgaagaaggaggtcggcgagaaccacgacgtgctccgcttcggcgtcaacaacagcgtcaagggcgacctcgcgccgcagcacccgatccaggccaccgtccacaaggtacccgtcgctgcttcccctctcctcgccccctcgaaaaccctaacgcgctgaatccgggtgattggtggtggggcttgcccacgcgcaggaggccaggttctgggcggataagaagaggttcggggcggaagccatctacggatctgctttcaacatccgcaaggatctcaatgcccaaatcctctccaagtaatttcactatcctatccccccatatgatctatccccccatatgatttcgcttggaaaacaatttgttcgagtaaataatcacttgcggttcatgttaacattagataactgtgtcggtattacatagcatatattggaattgttagggtcaatgacaattttgggtggaattcctcaaactcaaatggccttaTtgtgggacgagatatgtttctttgaatttgatgatggcatgtattccccctgtgtttgtctgttagataaccctcgcagtacataaaaaaaaaaacctcgcatttacataattttctgtaggcttcaattaaaaaataaactcaaggtctcgaaggatcaaattaaatatgtacaaatgaaaaaccccaaacaaccagacgttacgtaatcattagcatgcaaatcaaacgggaaattaggggatttcgtgggttagggaaaataatctcacccgatcgctcgctggctcattgttgcttctcatgagacaccagccatcgcacttgctgtgtttgtgcgtctacccgaggacagtacaaggcaaagagacaaaccaacaaacaagttagtttcaggttgcgataacaggcatgttagctgctgttgtgtcgggtactcggatattgtttatgggttgagcaagagagcaaataatggaccaattatgtctgagtattggtgtcaacagacaaggttctctggcgtcacccatgagagaatagaatagagcacttggaacaggccaaagccattggtatcatgtgacaccactgctataacgttggatccacccctgttttgtgtgtctagttgtaaatccgttagctctttgcatttactgcaactattttgctcttattgtcgtatgcatcaagtgtcagtgatgttatgttttgtggtcatcagcggtattctgctaactgttactccctacattctaaaatataagtcacaaccacctttaacctaaagaccAaaaaacaataatcacctcattgtttgaatcatcataATaaatactaatgcatgcaccctatagaattagagatcttgagggtgaaggatttaagaaataataatttagtggagaggaggtgctagttaacagcctcatcttttggcttatgcttatgtttataagccaaaaattgaattttcaaccttaaatttggaattgattttggggTtttttcatcatagtttattttccagcctttgtcttttagatcgctaaaaacacggatataaaaaatttatttgcaaattattttctgtttgcaaatatgccgtttcacttattctgtcaataagcAaaacgatgggggtcctaatttcaatgcatgcatgcacaccttgtataatgaaacgtgAaaaaaagtagttgtgccgtatattttagaatggaggtagtagtttgcaagttatttttgaaatttgttctcgtggctatgtgcagtattttgagcactgtttttaaggtgtttaattaggtcctgtttcttcaagagcatttccacaaatcaaatattaggactgctaagaatgtattaatgctttgagtatgctaacatggatggaatgtctggattccttggtctggttgaatacacaatcatatcttgaggttgctcttgtttgtctctccgtctctccgatgtagtaacaactaacaactagcacatcagcgcaactgtgcaaataagggaaaaacagcgtgcgcaactcatgcccaggctaacattaaagatgttttggttgatgatttatctgtttgcaggttccaaaggCcccctggtgcattgccatcatctatgctaggatacgaggcgctgactggttccttggatgatttcgggtttgaagattatctcaactgtaaggcttgttgtcctttgatttcctatgaatcttcttgctggcctttcacatttacgtgcaactatttgctcaccaacttttgctgatttattagctgcatgtttgatgcttatgttcttcattggaattatggaatccagtgctatcaagttctcattacctttatattaattctagTttttttattttagtagaccaaaaccatgtagtcttatgattccttgggagtttagaagttcttgggaaaccaagggtcatgaaatgatacttgtttttcatttttcatacttttagtcggtacatcttgataaaattttgctattaggatatacttggaggaatgtataataattatcacaaagtggttattttattctgtcctcatgatatgatatattaacagcaaagtacatattttgctttgtcatccaagcttggttggccttactttgcatggcaaaacatacatctcatcaccattttcagtgatgagatgtatcaccagaaatacagcctctatagacTAtatatttcagtcccacttctgccctgggaacatttttttttcttatttacactcgctgagtgttcttcctgTtgttggaaatgttacttagccttgtgttaattttctttttaccttggatcatattgcagtgccccaagattctgacagcttccatgctccagacatgcaccacggaatggaggttcgccttggtttgtcaaagggaccgatttgccctagtttcaattgatttcacaaaatgtatttctcgtcttgcactgttctcctcattcaatatctatgtcgctctttagactgagatttcgatgcttgttttggttcataaccacacttgtgacgagattccttatccatcatgtagacctcacatgtcattgagataaaagagtgtgacaagagtgtctcatgctagctaaagtgtggctccaattttgttagccacacattaggcaagtttgtcaaaacattgtgtcaaccttgcataaatagaaatactcaaCcaaacagtctattacgcttatacactgtcaaatcaaaatgggacagtttcagactttggccgtggcttccatccatcgtcaatgcttcaagtgtggggacttcttcaacagccccatccattgtcgtaccatgtggttgatctaatataaaggcattccgagttgagctatttaaacaacccaactaaaatagtactccctccatctacttttgatagacatatttctaaatctgaaaaatttacttttgataggcatatttcaattcaatcacctatcctcttaatgactttctatgatttaatgtgtgactctctattcttccacacaagattggctacatgggcatcgagaaatgtaaatattaatgaattgcttgtttacgaggaataaccagtagcatgtttaaatggatgataagtagaattatttttccttggtcattgtgccaagataaaatataactatcaaaagtagatggagggaatagtattggtaaatctctctctgcgagtaaagttcggcggcatgagttcttgcTttctttggaccctcgttggtacatgcaaatacagagcagcgagtaatgcaattctcgttccctcattgcatgaactacgttccaaaatcatctcgatcggtgcaggtgtaggcctaaccTttctgaaaaatcatttgcgtctctgaaataCcccactccaggcagcacccggcaaatgctagttaggtccatcatagttttcacttgaaaagaagcctgccgaaggttccaataatttgaacaagcaaacagaacactggaattgcatgtatgtctcaaaatcgcagagtattgactcctttttcggacacgttttatttgtcagttgcgactggaaaggacacatagaagaatggatgtgctaaaaatgatcatccgtcatatgaacgatacatttaatgtgaagagcacttggggcacattgagttgtttagagattttgcataacacaaggaaatatttagtggaaatcatcaaataaatgaaaaccatgaaagccatacttacatattctctaaattcaagaaaaatttgctagagataggtatatgcaagAAatacattcataccagatctagaggcgatagtggaggccgcggggtgcagttgccaaatctagCcccctctcgttcggatccggcttgtccggcgctggaggctgaccctcaagccaccgccagcggagaggtgacggcgcggacgtggaggtggcagggtgaggtaggaagggcgcaacgacgcgccatcgatggagggcatgcccgcgcggtgccatcggtggagaagggaggaagtggggcaccggctaggagtggccagtggcggcgctaggctggcgtggtgctgctaggaggcccacccgacggtggtaggactatggaagtccaacgcggcgtggcgatgcaagaggtcgatgcaggcaggtcgatgcgggtggcaccagcggtagcagaaggctggcgtggacggcgtcgggaggttggcgcgacaacgacaaagaagccagcctgactgatggcgtgaaggtcgacgcacgcgccaacggcaaagaagctggcctgactgatgtcatggaggtcaacacagtgatgacagggagtctaatgatggtggtgtgtgccacaaggcatgctgagactgactga
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| CDS seq | atggcgagcggcagcatcgtgaagaaggaggtcggcgagaaccacgacgtgctccgcttcggcgtcaacaacagcgtcaagggcgacctcgcgccgcagcacccgatccaggccaccgtccacaaggaggccaggttctgggcggataagaagaggttcggggcggaagccatctacggatctgctttcaacatccgcaaggatctcaatgcccaaatcctctccaagttccaaaggCcccctggtgcattgccatcatctatgctaggatacgaggcgctgactggttccttggatgatttcgggtttgaagattatctcaacttgccccaagattctgacagcttccatgctccagacatgcaccacggaatggaggactatggaagtccaacgcggcgtggcgatgcaagaggtcgatgcaggcaggtcgatgcgggtggcaccagcggtagcagaaggctggcgtggacggcgtcgggaggttggcgcgacaacgacaaagaagccagcctgactgatggcgtgaaggtcgacgcacgcgccaacggcaaagaagctggcctgactgatgtcatggaggtcaacacagtgatgacagggagtctaatgatggtggtgtgtgccacaaggcatgctgagactgactga
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| Protein seq | MASGSIVKKEVGENHDVLRFGVNNSVKGDLAPQHPIQATVHKEARFWADKKRFGAEAIYGSAFNIRKDLNAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLNLPQDSDSFHAPDMHHGMEDYGSPTRRGDARGRCRQVDAGGTSGSRRLAWTASGGWRDNDKEASLTDGVKVDARANGKEAGLTDVMEVNTVMTGSLMMVVCATRHAETD |
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| Function | Cyclin-B1-2 [UniProtKB/Swiss-Prot:Q0DWQ7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0024190 | OsLiXu_03g0024190.01 | Chr03 | 23576464 | 23581392 | + | NAM | ||
| CDS seq | atggcgagcggcagcatcgtgaagaaggaggtcggcgagaaccacgacgtgctccgcttcggcgtcaacaacagcgtcaagggcgacctcgcgccgcagcacccgatccaggccaccgtccacaaggaggccaggttctgggcggataagaagaggttcggggcggaagccatctacggatctgctttcaacatccgcaaggatctcaatgcccaaatcctctccaagttccaaaggCcccctggtgcattgccatcatctatgctaggatacgaggcgctgactggttccttggatgatttcgggtttgaagattatctcaacttgccccaagattctgacagcttccatgctccagacatgcaccacggaatggaggactatggaagtccaacgcggcgtggcgatgcaagaggtcgatgcaggcaggtcgatgcgggtggcaccagcggtagcagaaggctggcgtggacggcgtcgggaggttggcgcgacaacgacaaagaagccagcctgactgatggcgtgaaggtcgacgcacgcgccaacggcaaagaagctggcctgactgatgtcatggaggtcaacacagtgatgacagggagtctaatgatggtggtgtgtgccacaaggcatgctgagactgactga
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| Protein seq | MASGSIVKKEVGENHDVLRFGVNNSVKGDLAPQHPIQATVHKEARFWADKKRFGAEAIYGSAFNIRKDLNAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLNLPQDSDSFHAPDMHHGMEDYGSPTRRGDARGRCRQVDAGGTSGSRRLAWTASGGWRDNDKEASLTDGVKVDARANGKEAGLTDVMEVNTVMTGSLMMVVCATRHAETD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0583700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g38720 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0583700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0024640 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0024440 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0024470 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0024550 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0024230 | RBH | 7.765386 | 36.174644 | 22.531284 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0370800 | RBH | 23.9205745 | 37.2311995 | 29.478688 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0024020 | RBH | 0.849190 | 2.659219 | 1.912792 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0373500 | RBH | 0 | 0 | 0.0216475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0024310 | RBH | 0.271190 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0024350 | RBH | 1.384202 | 59.739021 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0024420 | RBH | 9.755136 | 26.519526 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0037090 | SBH | 3.605858 | 6.939103 | 4.809688 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0024090 | RBH | 0.296327 | 11.665488 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G024150 | RBH | 2.196946 | 22.269381 | 9.567749 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0024120 | RBH | 0.0 | 0.0 | 0.0 |
