Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0018910 | OGI:03039220 | 4/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:15373055-15373699 | ||||||||
| Gene Symbol | COPT3, COPT3, OsCOPT3 | ||||||||||
| DNA seq | atggccatgcagcccatgccgatgccgccgccggggccgggcggcgacgcgccaccggcgccgatgatgatgcccggcatggcgatgccgatgacgacgggcatgtccttcacctggggccaccgggcggtggtgctcttcccgcggtggccgggcgaccgcgccggcgtcggcatgtacctcctctgcctcctcctcgtgctcgccctcgccgcgctcgccgaggccctctccgcggcgtcgcgccggctcgacctcgacctcgacctctcccgttcgcgcggccggcggcggcggcggcagctgctcgccgcgggcgtccacgcggccaggatggggctcgcctacctggtgatgctcgccgtcatgtccttcaacgccggcgtgctcctcgccgccgtcgccggccacgccgcggggttcctcctcgcccggagcggcctcctcggctctcgcgccgccgcgccggaaatcgacgccgccgccgccgccgccgccacgtcgaacggttcttctctccatccatcgtcagagccgaaaccttaaaaaatatgtaattctcatcatgctgtcccgtaattaccagataatgaaaattgtagtcaacggagattatattaaaaaaaggctgcaaaattgtactgc
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| CDS seq | atggccatgcagcccatgccgatgccgccgccggggccgggcggcgacgcgccaccggcgccgatgatgatgcccggcatggcgatgccgatgacgacgggcatgtccttcacctggggccaccgggcggtggtgctcttcccgcggtggccgggcgaccgcgccggcgtcggcatgtacctcctctgcctcctcctcgtgctcgccctcgccgcgctcgccgaggccctctccgcggcgtcgcgccggctcgacctcgacctcgacctctcccgttcgcgcggccggcggcggcggcggcagctgctcgccgcgggcgtccacgcggccaggatggggctcgcctacctggtgatgctcgccgtcatgtccttcaacgccggcgtgctcctcgccgccgtcgccggccacgccgcggggttcctcctcgcccggagcggcctcctcggctctcgcgccgccgcgccggaaatcgacgccgccgccgccgccgccgccacgtcgaacggttcttctctccatccatcgtcagagccgaaaccttaa
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| Protein seq | MAMQPMPMPPPGPGGDAPPAPMMMPGMAMPMTTGMSFTWGHRAVVLFPRWPGDRAGVGMYLLCLLLVLALAALAEALSAASRRLDLDLDLSRSRGRRRRRQLLAAGVHAARMGLAYLVMLAVMSFNAGVLLAAVAGHAAGFLLARSGLLGSRAAAPEIDAAAAAAATSNGSSLHPSSEPKP |
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| Function | Copper transporter 4 [UniProtKB/Swiss-Prot:Q10KT6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0018910 | OsLiXu_03g0018910.01 | Chr03 | 15373055 | 15373699 | + | NAM | ||
| CDS seq | atggccatgcagcccatgccgatgccgccgccggggccgggcggcgacgcgccaccggcgccgatgatgatgcccggcatggcgatgccgatgacgacgggcatgtccttcacctggggccaccgggcggtggtgctcttcccgcggtggccgggcgaccgcgccggcgtcggcatgtacctcctctgcctcctcctcgtgctcgccctcgccgcgctcgccgaggccctctccgcggcgtcgcgccggctcgacctcgacctcgacctctcccgttcgcgcggccggcggcggcggcggcagctgctcgccgcgggcgtccacgcggccaggatggggctcgcctacctggtgatgctcgccgtcatgtccttcaacgccggcgtgctcctcgccgccgtcgccggccacgccgcggggttcctcctcgcccggagcggcctcctcggctctcgcgccgccgcgccggaaatcgacgccgccgccgccgccgccgccacgtcgaacggttcttctctccatccatcgtcagagccgaaaccttaa
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| Protein seq | MAMQPMPMPPPGPGGDAPPAPMMMPGMAMPMTTGMSFTWGHRAVVLFPRWPGDRAGVGMYLLCLLLVLALAALAEALSAASRRLDLDLDLSRSRGRRRRRQLLAAGVHAARMGLAYLVMLAVMSFNAGVLLAAVAGHAAGFLLARSGLLGSRAAAPEIDAAAAAAATSNGSSLHPSSEPKP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.086274 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0370800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g25470 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0370800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0018990 | SBH | 2.315663 | 2.587558 | 5.856492 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0242400 | RBH | 0.4911145 | 3.1429345 | 1.114741 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0018850 | SBH | 0.145006 | 0.060096 | 0.459624 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G018970 | SBH | 0.259002 | 0.000000 | 0.757071 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0018800 | RBH | 0.0 | 0.0 | 0.0 |
