Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0016290 | OGI:03032560 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:12597089-12599475 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agaccccaaaggcttgtaatggcaccatctctgttgcatacagcttgaagaaatgtagagatagttggcagtttctcttcttttgcattaagaagattcttgcatttgccgttcgtttacacggctcccggatgcgcccacgcgaaccgatcaatcgatcggtccggccatgtggtccggttcagttttcaggggacgtagtacatggggttggggatcttgaagacgcggtcgccgacgtagtcgccctgcaggtcgctccactggtcgccgacgttgccgcggatcctgtagccctcctcctccaccagccgcttcctcatcgccgacttgaacaccgacgagctctgcccccggtactccgggctcctgcattgtaccatgatattgcacgatcagatatcttactttctgaattttaaccatgcaacctatgctactaacaaagtagtattctgccatgggattgcgatatcttgtgcagttcgtcatctgaatgttcagctcagctgccagtatcattgatccattaacttggcagtcacaagccagcacttgacacgaatgctggggccattgaagcataaagattcgcggaattagcagaatgcaggatatgatctccggccctaatgcaggaggaaattaagggctttgttcattttgttttctaaatcaatcataccaaattttggtaatgctaaattttgtcgtattttggtagtaccaaatgtttttttgataatattggctttgcttggtttgatgattttattaaaTtttggtagaatttcaagagagtaagcttctagaactgttaaaatttggtaaggtagtaatggttaaagtgtgtttactttattgccctaccaaaatttaaaaggtttaaagtgacaacaaactaaacatgccataaaacatttttaaccagtgtaaaattttcacaacatggaacaagaacagaaatgtgatcgcacctcatgatgagcctctcataccccaagaacccctctgactcgagattctctgacgtgcaagtggccagtgtctcttcatccctcccggagaggaggaaaaccttgaaccccttggcttgcaacgtggcgaacaactcaagaaccgcaggtatccccgggcaagcccctttgctagcccacgtcttgaaggccgagggatcataggccctggaataaaaataccaacaagtcacgacatcgctggatatattaatctgtacttgaaagtactaattgccacatttccagcattaatatttttacttgaaagtactaagttttctgttttgataagctcatccaagccgattaaagaaaagattatcctattgatttagctactggccataaagtatcaTttttaaaaaatagtggatattttattggataatggaattgcatttggcgcctgtatctattagggacgcacacaatgacacagcctatagaaaagaaaagaaacaaagaaaagaaaggaagacaacgtgaacatattatgcttagttttttttttctgaatgaaacatattatgcttagtatcatctaggctgatagcctgatcctatgttgagttatgtacggactaatttaacgagaagttgaagtacagagaactaaaaaatggatgagttcgaactcttccccatacccgaactgcttggcctcgtagtagagcaggttggagaggcatgtgtcgtcgatgtcgaggatccatgcgtcgaggccgtcgccgtcggcctcgacggtgtcgacgtaggcggcgacctggtccatgacgctgctcaggtccctgccgtactgcccccgcgtcatgtagcccctgacgtaggcgacgcacgccgcgggcaccgtgcgccaccccctggcgttgttcgcctccaccatgacccgccagctcaggcacccggcgtcgccgtccacggacgccgagtggcacggcctcgccgcgacgccgccgccgacgtcgaggacgacggcgacgaccaaatgcggcagcaggacgacgagagcgacgacggccgccgccgtagcccgtgagaacgccattggacgcagcttagctagcctcgatcgacctgtaggcatcaacaagcatgacattgaattatatacgtacacaaagatattcacctagctcatcatcgatcgcaccccatttcgagaccgaaagaaagaaaaagaaagggacacggacagaaaggaaaaaaaggatcatgatccgatcgaccgagacagagagagcagagcactacttcatgctactactactatacctcgatcaatcaactcgatgtgccaagcaattgctgaatttgcagcagctaagccggccggaccgggacaggagattgtacgatcgatgatgcccc
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| CDS seq | atgtcatgcttgttgatgcctacaggtcgatcgaggctagctaagctgcgtccaatggcgttctcacgggctacggcggcggccgtcgtcgctctcgtcgtcctgctgccgcatttggtcgtcgccgtcgtcctcgacgtcggcggcggcgtcgcggcgaggccgtgccactcggcgtccgtggacggcgacgccgggtgcctgagctggcgggtcatggtggaggcgaacaacgccagggggtggcgcacggtgcccgcggcgtgcgtcgcctacgtcaggggctacatgacgcgggggcagtacggcagggacctgagcagcgtcatggaccaggtcgccgcctacgtcgacaccgtcgaggccgacggcgacggcctcgacgcatggatcctcgacatcgacgacacatgcctctccaacctgctctactacgaggccaagcagttcggggcctatgatccctcggccttcaagacgtgggctagcaaaggggcttgcccggggatacctgcggttcttgagttgttcgccacgttgcaagccaaggggttcaaggttttcctcctctccgggagggatgaagagacactggccacttgcacgtcagagaatctcgagtcagaggggttcttggggtatgagaggctcatcatgaggagcccggagtaccgggggcagagctcgtcggtgttcaagtcggcgatgaggaagcggctggtggaggaggagggctacaggatccgcggcaacgtcggcgaccagtggagcgacctgcagggcgactacgtcggcgaccgcgtcttcaagatccccaaccccatgtactacgtcccctga
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| Protein seq | MSCLLMPTGRSRLAKLRPMAFSRATAAAVVALVVLLPHLVVAVVLDVGGGVAARPCHSASVDGDAGCLSWRVMVEANNARGWRTVPAACVAYVRGYMTRGQYGRDLSSVMDQVAAYVDTVEADGDGLDAWILDIDDTCLSNLLYYEAKQFGAYDPSAFKTWASKGACPGIPAVLELFATLQAKGFKVFLLSGRDEETLATCTSENLESEGFLGYERLIMRSPEYRGQSSSVFKSAMRKRLVEEEGYRIRGNVGDQWSDLQGDYVGDRVFKIPNPMYYVP |
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| Function | Acid phosphatase 1 [UniProtKB/Swiss-Prot:P27061] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0016290 | OsLiXu_03g0016290.01 | Chr03 | 12597089 | 12599475 | - | NAM | ||
| CDS seq | atggcgttctcacgggctacggcggcggccgtcgtcgctctcgtcgtcctgctgccgcatttggtcgtcgccgtcgtcctcgacgtcggcggcggcgtcgcggcgaggccgtgccactcggcgtccgtggacggcgacgccgggtgcctgagctggcgggtcatggtggaggcgaacaacgccagggggtggcgcacggtgcccgcggcgtgcgtcgcctacgtcaggggctacatgacgcgggggcagtacggcagggacctgagcagcgtcatggaccaggtcgccgcctacgtcgacaccgtcgaggccgacggcgacggcctcgacgcatggatcctcgacatcgacgacacatgcctctccaacctgctctactacgaggccaagcagttcggggcctatgatccctcggccttcaagacgtgggctagcaaaggggcttgcccggggatacctgcggttcttgagttgttcgccacgttgcaagccaaggggttcaaggttttcctcctctccgggagggatgaagagacactggccacttgcacgtcagagaatctcgagtcagaggggttcttggggtatgagaggctcatcatgaggagcccggagtaccgggggcagagctcgtcggtgttcaagtcggcgatgaggaagcggctggtggaggaggagggctacaggatccgcggcaacgtcggcgaccagtggagcgacctgcagggcgactacgtcggcgaccgcgtcttcaagatccccaaccccatgtactacgtcccctga
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| Protein seq | MAFSRATAAAVVALVVLLPHLVVAVVLDVGGGVAARPCHSASVDGDAGCLSWRVMVEANNARGWRTVPAACVAYVRGYMTRGQYGRDLSSVMDQVAAYVDTVEADGDGLDAWILDIDDTCLSNLLYYEAKQFGAYDPSAFKTWASKGACPGIPAVLELFATLQAKGFKVFLLSGRDEETLATCTSENLESEGFLGYERLIMRSPEYRGQSSSVFKSAMRKRLVEEEGYRIRGNVGDQWSDLQGDYVGDRVFKIPNPMYYVP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0016290 | OsLiXu_03g0016290.02 | Chr03 | 12597104 | 12599390 | - | NAM | ||
| CDS seq | atgtcatgcttgttgatgcctacaggtcgatcgaggctagctaagctgcgtccaatggcgttctcacgggctacggcggcggccgtcgtcgctctcgtcgtcctgctgccgcatttggtcgtcgccgtcgtcctcgacgtcggcggcggcgtcgcggcgaggccgtgccactcggcgtccgtggacggcgacgccgggtgcctgagctggcgggtcatggtggaggcgaacaacgccagggggtggcgcacggtgcccgcggcgtgcgtcgcctacgtcaggggctacatgacgcgggggcagtacggcagggacctgagcagcgtcatggaccaggtcgccgcctacgtcgacaccgtcgaggccgacggcgacggcctcgacgcatggatcctcgacatcgacgacacatgcctctccaacctgctctactacgaggccaagcagttcggggcctatgatccctcggccttcaagacgtgggctagcaaaggggcttgcccggggatacctgcggttcttgagttgttcgccacgttgcaagccaaggggttcaaggttttcctcctctccgggagggatgaagagacactggccacttgcacgtcagagaatctcgagtcagaggggttcttggggtatgagaggctcatcatgaggagcccggagtaccgggggcagagctcgtcggtgttcaagtcggcgatgaggaagcggctggtggaggaggagggctacaggatccgcggcaacgtcggcgaccagtggagcgacctgcagggcgactacgtcggcgaccgcgtcttcaagatccccaaccccatgtactacgtcccctga
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| Protein seq | MSCLLMPTGRSRLAKLRPMAFSRATAAAVVALVVLLPHLVVAVVLDVGGGVAARPCHSASVDGDAGCLSWRVMVEANNARGWRTVPAACVAYVRGYMTRGQYGRDLSSVMDQVAAYVDTVEADGDGLDAWILDIDDTCLSNLLYYEAKQFGAYDPSAFKTWASKGACPGIPAVLELFATLQAKGFKVFLLSGRDEETLATCTSENLESEGFLGYERLIMRSPEYRGQSSSVFKSAMRKRLVEEEGYRIRGNVGDQWSDLQGDYVGDRVFKIPNPMYYVP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 5.429770 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0332533 | RBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g21480 | RBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0332533 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0016620 | RBH | 0.0 | 32.686161 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0016450 | RBH | 0.0 | 6.281322 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0016480 | RBH | 0.0 | 2.045376 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0016470 | RBH | 0.0 | 0.054136 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0016240 | RBH | 0.0 | 18.381802 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0202500 | RBH | 1.483884 | 17.3193775 | 1.1140185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0016120 | RBH | 0.0 | 0.510356 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0206600 | RBH | 1.037803 | 4.2537575 | 1.170173 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0016360 | RBH | 0.0 | 0.379670 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0016380 | RBH | 0.0 | 18.990335 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0016430 | RBH | 0.0 | 31.958977 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0028040 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0016220 | RBH | 0.0 | 7.525728 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G016180 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0016130 | RBH | 0.0 | 37.436699 | 0.0 |
