Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0015370 | OGI:03030580 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:11748662-11750810 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tccccaaatttctcttccgccaaccgccatgcgtctcccgcccgtccgcttcctgccgtcgagcgcggcgccggccgtggtggcggcgaacgcgcgcatagcccacctcgcccgggcggggaacatcgagggcgcgagggcggccttcgaggccatgcccctccgcaccaccgcctcctacaacgccctcctcgccggctacttccgcaaccgcctgccggacgcggccctcggcctcttccgccgcatgccctcccgcgacctcgcctcctacaacgccctcatatccggcctctcgctccgccgccagacgctcccggacgccgccgccgcgctcgcctccatccccttcccgccctccgtcgtctccttcacctccctcctccgtgggtacgtgcgccacggcctcctcgccgacgccatccgcttgttccagcagatgccggagcggaaccacgtctcttacaccgtgctgctcggtggactccttgatgccggccgtgtcaacgaggctcgcaggctgttcgacgaaatgcctgacagggatgtcgtggcgtggacagccatgctgtctgggtactgccaggctggtcggatcactgaggcacgcgctctgtttgatgaaatgccgaagaggaatgtcgtgtcatggaccgcgatgatctccggatatgctcaaaacggtgaggtgaaccttgcaaggaagctgttcgaggtgatgcctgagcgcaatgaggtctcgtggactgcaatgttggttgggtacatacaagctggccatgttgaggatgctgcagagctgtttaatgcaatgccggaacatccagtggccgcctgcaatgccatgatggttgggtttgggcaacgtggaatggtggatgctgccaagacagtgtttgagaaaatgcgcgagagagatgatgggacatggagtgccatgattaaagcgtatgagcagaacgaattcttgatggaggcactatctaccttccgtgagatgttgtggagaggtgtccgtccaaactacccatcagtcatcagcatactcacagtgtgtgcggcactggctgttcttgattatgggagggaggtgcatgctgcaatgctgagatgctcctttgacatggacgtctttgctgtgtcagcattaatcacaatgtatataaaatgtggaaatctggataaggccaagagggtctttcacacgtttgagccaaaagatattgtgatgtggaactccatgatcactggttatgctcaacatggattgggggagcaagcacttggcatatttcatgatatgaggttggcaggaatgtcgcctgatggaattacttatataggggccctcacagcttgtagctataccggtaaagttaaagaagggagggagatttttaattctatgactgtgaattcttccatccgacctggagctgagcattattcttgtatggttgatttacttggtcgatcaggccttgtggaggaagcatttgacttgataaagaatatgccagttgaaccagatgctgtcatctggggagctctgatgggtgcctgtaggatgcacaggaatgctgagattgctgaggttgctgctaagaagctattagagctagagcctgggaatgctggaccgtatgtcttactctctcacatttatacatccgttgggaggtgggaagatgcttctaagatgcggaaattcattagctcaaggaatttgaacaagtcaccaggctgtagttggatagagtacgacaagagggtgcatcttttcacatctggtgatgtattagcacatccagaacatgccgctattcttaggatattggaaaaactagatgggctattgatggagtctggttactcggctgatggaagctttgtgcttcatgatatagatgaggagcaaaagtctcatagcttgcggtatcatagtgagagacaggctgtggcatatggactactgaaaatcccagaaggaatgcccattcgtgtcatgaaaaacctcagggtttgtggtgactgccattctgcaataaagttgattgcaaagatcacttctagggaaatcgtactaagagatgccaatagattccatcatttcaaagatgggttttgctcatgcagggactactggtga
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| CDS seq | atgcgtctcccgcccgtccgcttcctgccgtcgagcgcggcgccggccgtggtggcggcgaacgcgcgcatagcccacctcgcccgggcggggaacatcgagggcgcgagggcggccttcgaggccatgcccctccgcaccaccgcctcctacaacgccctcctcgccggctacttccgcaaccgcctgccggacgcggccctcggcctcttccgccgcatgccctcccgcgacctcgcctcctacaacgccctcatatccggcctctcgctccgccgccagacgctcccggacgccgccgccgcgctcgcctccatccccttcccgccctccgtcgtctccttcacctccctcctccgtgggtacgtgcgccacggcctcctcgccgacgccatccgcttgttccagcagatgccggagcggaaccacgtctcttacaccgtgctgctcggtggactccttgatgccggccgtgtcaacgaggctcgcaggctgttcgacgaaatgcctgacagggatgtcgtggcgtggacagccatgctgtctgggtactgccaggctggtcggatcactgaggcacgcgctctgtttgatgaaatgccgaagaggaatgtcgtgtcatggaccgcgatgatctccggatatgctcaaaacggtgaggtgaaccttgcaaggaagctgttcgaggtgatgcctgagcgcaatgaggtctcgtggactgcaatgttggttgggtacatacaagctggccatgttgaggatgctgcagagctgtttaatgcaatgccggaacatccagtggccgcctgcaatgccatgatggttgggtttgggcaacgtggaatggtggatgctgccaagacagtgtttgagaaaatgcgcgagagagatgatgggacatggagtgccatgattaaagcgtatgagcagaacgaattcttgatggaggcactatctaccttccgtgagatgttgtggagaggtgtccgtccaaactacccatcagtcatcagcatactcacagtgtgtgcggcactggctgttcttgattatgggagggaggtgcatgctgcaatgctgagatgctcctttgacatggacgtctttgctgtgtcagcattaatcacaatgtatataaaatgtggaaatctggataaggccaagagggtctttcacacgtttgagccaaaagatattgtgatgtggaactccatgatcactggttatgctcaacatggattgggggagcaagcacttggcatatttcatgatatgaggttggcaggaatgtcgcctgatggaattacttatataggggccctcacagcttgtagctataccggtaaagttaaagaagggagggagatttttaattctatgactgtgaattcttccatccgacctggagctgagcattattcttgtatggttgatttacttggtcgatcaggccttgtggaggaagcatttgacttgataaagaatatgccagttgaaccagatgctgtcatctggggagctctgatgggtgcctgtaggatgcacaggaatgctgagattgctgaggttgctgctaagaagctattagagctagagcctgggaatgctggaccgtatgtcttactctctcacatttatacatccgttgggaggtgggaagatgcttctaagatgcggaaattcattagctcaaggaatttgaacaagtcaccaggctgtagttggatagagtacgacaagagggtgcatcttttcacatctggtgatgtattagcacatccagaacatgccgctattcttaggatattggaaaaactagatgggctattgatggagtctggttactcggctgatggaagctttgtgcttcatgatatagatgaggagcaaaagtctcatagcttgcggtatcatagtgagagacaggctgtggcatatggactactgaaaatcccagaaggaatgcccattcgtgtcatgaaaaacctcagggtttgtggtgactgccattctgcaataaagttgattgcaaagatcacttctagggaaatcgtactaagagatgccaatagattccatcatttcaaagatgggttttgctcatgcagggactactggtga
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| Protein seq | MRLPPVRFLPSSAAPAVVAANARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW |
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| Function | Pentatricopeptide repeat-containing protein At1g56690, mitochondrial [UniProtKB/Swiss-Prot:Q9FXB9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0015370 | OsLiXu_03g0015370.01 | Chr03 | 11748662 | 11750810 | + | NAM | ||
| CDS seq | atgcgtctcccgcccgtccgcttcctgccgtcgagcgcggcgccggccgtggtggcggcgaacgcgcgcatagcccacctcgcccgggcggggaacatcgagggcgcgagggcggccttcgaggccatgcccctccgcaccaccgcctcctacaacgccctcctcgccggctacttccgcaaccgcctgccggacgcggccctcggcctcttccgccgcatgccctcccgcgacctcgcctcctacaacgccctcatatccggcctctcgctccgccgccagacgctcccggacgccgccgccgcgctcgcctccatccccttcccgccctccgtcgtctccttcacctccctcctccgtgggtacgtgcgccacggcctcctcgccgacgccatccgcttgttccagcagatgccggagcggaaccacgtctcttacaccgtgctgctcggtggactccttgatgccggccgtgtcaacgaggctcgcaggctgttcgacgaaatgcctgacagggatgtcgtggcgtggacagccatgctgtctgggtactgccaggctggtcggatcactgaggcacgcgctctgtttgatgaaatgccgaagaggaatgtcgtgtcatggaccgcgatgatctccggatatgctcaaaacggtgaggtgaaccttgcaaggaagctgttcgaggtgatgcctgagcgcaatgaggtctcgtggactgcaatgttggttgggtacatacaagctggccatgttgaggatgctgcagagctgtttaatgcaatgccggaacatccagtggccgcctgcaatgccatgatggttgggtttgggcaacgtggaatggtggatgctgccaagacagtgtttgagaaaatgcgcgagagagatgatgggacatggagtgccatgattaaagcgtatgagcagaacgaattcttgatggaggcactatctaccttccgtgagatgttgtggagaggtgtccgtccaaactacccatcagtcatcagcatactcacagtgtgtgcggcactggctgttcttgattatgggagggaggtgcatgctgcaatgctgagatgctcctttgacatggacgtctttgctgtgtcagcattaatcacaatgtatataaaatgtggaaatctggataaggccaagagggtctttcacacgtttgagccaaaagatattgtgatgtggaactccatgatcactggttatgctcaacatggattgggggagcaagcacttggcatatttcatgatatgaggttggcaggaatgtcgcctgatggaattacttatataggggccctcacagcttgtagctataccggtaaagttaaagaagggagggagatttttaattctatgactgtgaattcttccatccgacctggagctgagcattattcttgtatggttgatttacttggtcgatcaggccttgtggaggaagcatttgacttgataaagaatatgccagttgaaccagatgctgtcatctggggagctctgatgggtgcctgtaggatgcacaggaatgctgagattgctgaggttgctgctaagaagctattagagctagagcctgggaatgctggaccgtatgtcttactctctcacatttatacatccgttgggaggtgggaagatgcttctaagatgcggaaattcattagctcaaggaatttgaacaagtcaccaggctgtagttggatagagtacgacaagagggtgcatcttttcacatctggtgatgtattagcacatccagaacatgccgctattcttaggatattggaaaaactagatgggctattgatggagtctggttactcggctgatggaagctttgtgcttcatgatatagatgaggagcaaaagtctcatagcttgcggtatcatagtgagagacaggctgtggcatatggactactgaaaatcccagaaggaatgcccattcgtgtcatgaaaaacctcagggtttgtggtgactgccattctgcaataaagttgattgcaaagatcacttctagggaaatcgtactaagagatgccaatagattccatcatttcaaagatgggttttgctcatgcagggactactggtga
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| Protein seq | MRLPPVRFLPSSAAPAVVAANARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.214248 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0317100 | RBH | 0.397744 | 0.997884 | 0.316657 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g20190 | RBH | 0.305023 | 0.622224 | 0.092438 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0317100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0015640 | RBH | 0.056203 | 0.594375 | 0.884375 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0015490 | RBH | 0.046319 | 0.0 | 0.651265 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0015470 | RBH | 0.387404 | 0.0 | 1.185455 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0015470 | RBH | 0.099334 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0015290 | RBH | 0.727464 | 4.761991 | 3.106542 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0189600 | RBH | 0.748023 | 1.5491395 | 0.338604 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0015180 | RBH | 0.0 | 0.0 | 0.114700 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0193500 | RBH | 0.6554725 | 1.3804405 | 2.468413 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0015430 | RBH | 0.038550 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0015430 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0015480 | RBH | 0.0 | 5.137037 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0028500 | SBH | 0.129829 | 0.119483 | 0.230440 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0015290 | RBH | 0.109880 | 1.288389 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G015250 | RBH | 0.0 | 1.807641 | 0.329694 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0015120 | RBH | 0.220416 | 0.0 | 0.730493 |
