Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0010920 | OGI:03021690 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:8285820-8288008 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccgtcgcggcggctgctcgccgccgcggcctccccgccgccggctgcggaggagaaggccgtggtcgacggcctgcgggggtctcacggcgcgcggcgccacgccgcgggctcggcggtgggcgccggggtggcggcggtggtagcgctgatgctggtggcgttgggtctgggtctgttcgtgtggctgcggcgcgggaggaagcgtggggcgggctcgggtggtggtgcggcggcggggatgggggtgggggtgggggtGggggcgaggacgcagccggcgcccgcgctgcggaggctgtcgtgccagcagctgaggcgcgcgacgggggggttcgcggcggggagcaagctcgggcagggcgggttcggccccgtgttccgcggcgcgctgccgaggtcggggcaggccgtggccgtgaaggtgatggacgccgcgggatcgctgcagggggagcgggagttccacaacgagctctcgctggcgtcccatctccttggctgcggccacggccacggctcgccgtccatcctcctgccgttcgcctactcgctctccgcgcagccgcggcgccgccggatgatgctcgtgtacgagctcatgccgaacgggtcgctgcaggacgcgctgctcgggaagaggtgccccgagctggtgtccgagtggccgcggcggctcgcggtggcgcgtgacgtggccgccgcgctccattacctccattccgtcgcgcaaccaccagtgatccatggagacgtgaagcccagcaatgtgttgctggatggtgagctccgtgctcgcctctcagattttggcctcgcgcagataaagtcggaggagggggatgaattagagagtgctgcaattgagggcaatggaaatgagagtagcaatccttgtggcggatgtgatgatgacatgtctgttgctgatgaaaatgctactgctgttgctgtcaatggggaagacaatgctgccaagtcaccggaagatgatgaggggtttaccatggcttctcctgcagaggcagcatccacttcaggatgtgataagactagtgtcggtagcggattgaatggccgaagctgcaatggtggaggtgctgcagcatcaggagctgggaatgactggtggtggcgtcaggacaatggtggtggttctggtggtgtcaaggactatgtgatggaatggattaggtcggagatcaagaaggagcggccgaagaatgattggattgcaggagcatctgcaaccacccctgccacctcaacagagagaaagaaaacaaagcgcagggcgagagaatggtggcgtgaggagtatgctgatgagctaaccaagaagcaaaaaaggcgagcacttgctaagtcaaggagtgagattggtccaatggctagcatgcagtggtgggagagggactgtgacttagaggagaagggacgatcaaggtggagaatgatgaaaagctggagtcgtaggagcagcaatggcaatggcagcattgattggtggattgacggtgtgagaaggagcagcagggattgggctagtggggaattcgtgcccaagagtggtggagcagtgagcagcacaccaagcatgcgtggcacagtctgctatgttgcacctgaatatggtggtggtggacctctatcagagaaatgtgacatttacagctttggcgttttgttgttagttcttatttctggacgccgcccactccaagtgacggcctcacccatgtcagagtttgagaaggcaagtcttatttcatgggcaagacatcttgcccgtgttggccgcttgcttgatcttgtagaccctgcgctgcgggatgttaaccgtgaccaggcgctgcgatgcattactgttgcactcttgtgcatccagagatcgccaagtcgccgtccatcaagtgaggaggtgcttgaaatgctctctggtgagggtgaaccaccgaatctcccagtggagttctcaccgtcacctcctggtgggttccgtttcaggtcccgcaagaaaggtcggtgagtttattttgttggttagatgaaataggtagtgttacttttctgctgctgcttgccttatcttgtacaccactaatttgtgtacactaccactaatttttctgttgaattgatttgtttataaagatcttgatggggaaaagtgacggtttcagtttc
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| CDS seq | atgccgtcgcggcggctgctcgccgccgcggcctccccgccgccggctgcggaggagaaggccgtggtcgacggcctgcgggggtctcacggcgcgcggcgccacgccgcgggctcggcggtgggcgccggggtggcggcggtggtagcgctgatgctggtggcgttgggtctgggtctgttcgtgtggctgcggcgcgggaggaagcgtggggcgggctcgggtggtggtgcggcggcggggatgggggtgggggtgggggtGggggcgaggacgcagccggcgcccgcgctgcggaggctgtcgtgccagcagctgaggcgcgcgacgggggggttcgcggcggggagcaagctcgggcagggcgggttcggccccgtgttccgcggcgcgctgccgaggtcggggcaggccgtggccgtgaaggtgatggacgccgcgggatcgctgcagggggagcgggagttccacaacgagctctcgctggcgtcccatctccttggctgcggccacggccacggctcgccgtccatcctcctgccgttcgcctactcgctctccgcgcagccgcggcgccgccggatgatgctcgtgtacgagctcatgccgaacgggtcgctgcaggacgcgctgctcgggaagaggtgccccgagctggtgtccgagtggccgcggcggctcgcggtggcgcgtgacgtggccgccgcgctccattacctccattccgtcgcgcaaccaccagtgatccatggagacgtgaagcccagcaatgtgttgctggatggtgagctccgtgctcgcctctcagattttggcctcgcgcagataaagtcggaggagggggatgaattagagagtgctgcaattgagggcaatggaaatgagagtagcaatccttgtggcggatgtgatgatgacatgtctgttgctgatgaaaatgctactgctgttgctgtcaatggggaagacaatgctgccaagtcaccggaagatgatgaggggtttaccatggcttctcctgcagaggcagcatccacttcaggatgtgataagactagtgtcggtagcggattgaatggccgaagctgcaatggtggaggtgctgcagcatcaggagctgggaatgactggtggtggcgtcaggacaatggtggtggttctggtggtgtcaaggactatgtgatggaatggattaggtcggagatcaagaaggagcggccgaagaatgattggattgcaggagcatctgcaaccacccctgccacctcaacagagagaaagaaaacaaagcgcagggcgagagaatggtggcgtgaggagtatgctgatgagctaaccaagaagcaaaaaaggcgagcacttgctaagtcaaggagtgagattggtccaatggctagcatgcagtggtgggagagggactgtgacttagaggagaagggacgatcaaggtggagaatgatgaaaagctggagtcgtaggagcagcaatggcaatggcagcattgattggtggattgacggtgtgagaaggagcagcagggattgggctagtggggaattcgtgcccaagagtggtggagcagtgagcagcacaccaagcatgcgtggcacagtctgctatgttgcacctgaatatggtggtggtggacctctatcagagaaatgtgacatttacagctttggcgttttgttgttagttcttatttctggacgccgcccactccaagtgacggcctcacccatgtcagagtttgagaaggcaagtcttatttcatgggcaagacatcttgcccgtgttggccgcttgcttgatcttgtagaccctgcgctgcgggatgttaaccgtgaccaggcgctgcgatgcattactgttgcactcttgtgcatccagagatcgccaagtcgccgtccatcaagtgaggaggtgcttgaaatgctctctggtgagggtgaaccaccgaatctcccagtggagttctcaccgtcacctcctggtgggttccgtttcaggtcccgcaagaaaggtcggtga
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| Protein seq | MPSRRLLAAAASPPPAAEEKAVVDGLRGSHGARRHAAGSAVGAGVAAVVALMLVALGLGLFVWLRRGRKRGAGSGGGAAAGMGVGVGVGARTQPAPALRRLSCQQLRRATGGFAAGSKLGQGGFGPVFRGALPRSGQAVAVKVMDAAGSLQGEREFHNELSLASHLLGCGHGHGSPSILLPFAYSLSAQPRRRRMMLVYELMPNGSLQDALLGKRCPELVSEWPRRLAVARDVAAALHYLHSVAQPPVIHGDVKPSNVLLDGELRARLSDFGLAQIKSEEGDELESAAIEGNGNESSNPCGGCDDDMSVADENATAVAVNGEDNAAKSPEDDEGFTMASPAEAASTSGCDKTSVGSGLNGRSCNGGGAAASGAGNDWWWRQDNGGGSGGVKDYVMEWIRSEIKKERPKNDWIAGASATTPATSTERKKTKRRAREWWREEYADELTKKQKRRALAKSRSEIGPMASMQWWERDCDLEEKGRSRWRMMKSWSRRSSNGNGSIDWWIDGVRRSSRDWASGEFVPKSGGAVSSTPSMRGTVCYVAPEYGGGGPLSEKCDIYSFGVLLLVLISGRRPLQVTASPMSEFEKASLISWARHLARVGRLLDLVDPALRDVNRDQALRCITVALLCIQRSPSRRPSSEEVLEMLSGEGEPPNLPVEFSPSPPGGFRFRSRKKGR |
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| Function | Receptor-like serine/threonine-protein kinase At2g45590 [UniProtKB/Swiss-Prot:O64639] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0010920 | OsLiXu_03g0010920.01 | Chr03 | 8285820 | 8288008 | + | NAM | ||
| CDS seq | atgccgtcgcggcggctgctcgccgccgcggcctccccgccgccggctgcggaggagaaggccgtggtcgacggcctgcgggggtctcacggcgcgcggcgccacgccgcgggctcggcggtgggcgccggggtggcggcggtggtagcgctgatgctggtggcgttgggtctgggtctgttcgtgtggctgcggcgcgggaggaagcgtggggcgggctcgggtggtggtgcggcggcggggatgggggtgggggtgggggtGggggcgaggacgcagccggcgcccgcgctgcggaggctgtcgtgccagcagctgaggcgcgcgacgggggggttcgcggcggggagcaagctcgggcagggcgggttcggccccgtgttccgcggcgcgctgccgaggtcggggcaggccgtggccgtgaaggtgatggacgccgcgggatcgctgcagggggagcgggagttccacaacgagctctcgctggcgtcccatctccttggctgcggccacggccacggctcgccgtccatcctcctgccgttcgcctactcgctctccgcgcagccgcggcgccgccggatgatgctcgtgtacgagctcatgccgaacgggtcgctgcaggacgcgctgctcgggaagaggtgccccgagctggtgtccgagtggccgcggcggctcgcggtggcgcgtgacgtggccgccgcgctccattacctccattccgtcgcgcaaccaccagtgatccatggagacgtgaagcccagcaatgtgttgctggatggtgagctccgtgctcgcctctcagattttggcctcgcgcagataaagtcggaggagggggatgaattagagagtgctgcaattgagggcaatggaaatgagagtagcaatccttgtggcggatgtgatgatgacatgtctgttgctgatgaaaatgctactgctgttgctgtcaatggggaagacaatgctgccaagtcaccggaagatgatgaggggtttaccatggcttctcctgcagaggcagcatccacttcaggatgtgataagactagtgtcggtagcggattgaatggccgaagctgcaatggtggaggtgctgcagcatcaggagctgggaatgactggtggtggcgtcaggacaatggtggtggttctggtggtgtcaaggactatgtgatggaatggattaggtcggagatcaagaaggagcggccgaagaatgattggattgcaggagcatctgcaaccacccctgccacctcaacagagagaaagaaaacaaagcgcagggcgagagaatggtggcgtgaggagtatgctgatgagctaaccaagaagcaaaaaaggcgagcacttgctaagtcaaggagtgagattggtccaatggctagcatgcagtggtgggagagggactgtgacttagaggagaagggacgatcaaggtggagaatgatgaaaagctggagtcgtaggagcagcaatggcaatggcagcattgattggtggattgacggtgtgagaaggagcagcagggattgggctagtggggaattcgtgcccaagagtggtggagcagtgagcagcacaccaagcatgcgtggcacagtctgctatgttgcacctgaatatggtggtggtggacctctatcagagaaatgtgacatttacagctttggcgttttgttgttagttcttatttctggacgccgcccactccaagtgacggcctcacccatgtcagagtttgagaaggcaagtcttatttcatgggcaagacatcttgcccgtgttggccgcttgcttgatcttgtagaccctgcgctgcgggatgttaaccgtgaccaggcgctgcgatgcattactgttgcactcttgtgcatccagagatcgccaagtcgccgtccatcaagtgaggaggtgcttgaaatgctctctggtgagggtgaaccaccgaatctcccagtggagttctcaccgtcacctcctggtgggttccgtttcaggtcccgcaagaaaggtcggtga
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| Protein seq | MPSRRLLAAAASPPPAAEEKAVVDGLRGSHGARRHAAGSAVGAGVAAVVALMLVALGLGLFVWLRRGRKRGAGSGGGAAAGMGVGVGVGARTQPAPALRRLSCQQLRRATGGFAAGSKLGQGGFGPVFRGALPRSGQAVAVKVMDAAGSLQGEREFHNELSLASHLLGCGHGHGSPSILLPFAYSLSAQPRRRRMMLVYELMPNGSLQDALLGKRCPELVSEWPRRLAVARDVAAALHYLHSVAQPPVIHGDVKPSNVLLDGELRARLSDFGLAQIKSEEGDELESAAIEGNGNESSNPCGGCDDDMSVADENATAVAVNGEDNAAKSPEDDEGFTMASPAEAASTSGCDKTSVGSGLNGRSCNGGGAAASGAGNDWWWRQDNGGGSGGVKDYVMEWIRSEIKKERPKNDWIAGASATTPATSTERKKTKRRAREWWREEYADELTKKQKRRALAKSRSEIGPMASMQWWERDCDLEEKGRSRWRMMKSWSRRSSNGNGSIDWWIDGVRRSSRDWASGEFVPKSGGAVSSTPSMRGTVCYVAPEYGGGGPLSEKCDIYSFGVLLLVLISGRRPLQVTASPMSEFEKASLISWARHLARVGRLLDLVDPALRDVNRDQALRCITVALLCIQRSPSRRPSSEEVLEMLSGEGEPPNLPVEFSPSPPGGFRFRSRKKGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.080581 | 0.326812 | 0.420666 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0251700 | RBH | 0.063462 | 0.223350 | 0.798460 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g14710 | RBH | 0.000000 | 0.164854 | 0.201027 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0251700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0011160 | RBH | 0.0 | 1.198786 | 0.578490 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0011000 | RBH | 0.058687 | 0.478264 | 0.361956 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0011010 | RBH | 0.191755 | 1.018487 | 0.592913 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0010990 | RBH | 0.016289 | 0.134645 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0010850 | RBH | 0.0 | 4.711533 | 1.547980 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0135300 | RBH | 1.4833235 | 2.758377 | 7.199068 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0010740 | RBH | 0.044201 | 0.146063 | 0.168719 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0135500 | RBH | 1.894324 | 1.454811 | 9.0104465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0010900 | RBH | 0.039218 | 0.191031 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0010970 | RBH | 0.0 | 2.673369 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0010940 | RBH | 0.0 | 2.884544 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0010850 | RBH | 0.053936 | 1.818606 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G010840 | RBH | 0.0 | 0.406318 | 0.425117 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0010710 | RBH | 0.217108 | 3.587826 | 1.061470 |
