Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0010140 | OGI:03019750 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:7540393-7544929 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aagaaatgcatctccattctgatttttatacaatatggtacatatttgtgacatacacagcctgcacccatgctcaaatgcacatgcacaagaaaaagaaattctaccatagcatagattcagatctctcattcttgatttcaaaacagccagccacatgagcatgaatttttagtatctgaaaaccctctgaaaaacaaattcagtattacaacaatccacatacattgtaacagatagatcatgcttgattctccaagtaagattttcgaagatgatctagtcagaatccgaagtaagatccatttcagggtgaaacaggccgagtaactttgctaggtgctccgccatgtcttccacctcctccctcccgaagccccagtcacggaggaccagagacccgatggcacctcttgcgacaccgtgcttctggaggctccccgatcgcctctctatgaaaggcaggacggcgctgcttgatcgtaatcgtgccgccatcggtatcgattcaatatcaagtgagccctttggctgggattcttctgcatggtcgctaaggatctccccatgccggccaatgttgcctctgaagattgacgggaacggaagggggacagggagggggcaaagagatgctgagagatgggaaaattttggctttgtctctctggcttcatagactgaacataccgagtctttcacttgtgatatggaagtcctttgcccacctgtgcaaacaaatttcaattgttaattctttgtacttctacatgtataaccaaaatttagccaccatgcctataatgttgtgaaatgttcaatattgtacaatataacagtagaaaaataagttctgttggcatgacaaataataggacttcccaactcccccatctcgttttccgcgcgcatgcttttcaaactgctaaacattgtgttttttgcaaaaagtgtctatacgaaagttgcttaaaaaaatcatattgatccatttttgaaaaaaaaaaagctaatacttaattaatcacgcgctaatggaccactctgttttccgtgcggaggagataggttcccatcctccagtaccgaacacagccttaatcagaccctatggcaaaagataagatgtgcagacctttatcaagagctccatgaaccaccagcgattcaactgaataaggatcttcatcctcatcgctgatttcaggggtcaaagagtgcaacttcatctctatgttccccatagcatctctatctgcaaattacaagtgtgcaattagcaagcaagattaaatttccatccaatgttggtatgacagtaggacatatgttatgttgtgtacctgtcaaagaaggggcaggcatcgctacatccagagcagtaaccatgttctgccgaccttgatcagataaaatgtgcagaagttcaccaatgtcaagattaccagatgaatgtgccaagtctgaactcgggcccgttcgttgcaatctaaatggaacagtaattgaatgtattgctgcagcacaaacagcactagcatggaatggtttctcgtcttgtatataaagatacgatgacatgtaacctgatgaaacagagtgaaaggaaatttgtgagaaaatctcatgtacattcatgtacattcatgaaagtatttttttaagggaattcatgaaagtaattttgtatggaaatcaaatgtgaatatacagcatgaacaaaaggagttgatatttaatggaaatgcaatcaagtgcagtatcttaaggcacaagatcagtatacatgaaagcaatcaaagacaaaattaggctaccggaaagaagtcctataaaatcacagaataacaatagcatcgcaatttagtatcctcctgtgtatttagccaacatacgagaactccccagacctaaaagtgctcgaatggaaagttttcaaaaaagaataaaaaaataaactaaaaacgtggagttcaggcaaaggacatacttctacttaatgaaggcggtcctatgggtaccatcaggttgcaaaaggacgaaagttttgaaaatgaaacagcatcatgaagagctctcataatggactccctttgattcctcctggatgatccaagggtcattggatccctcacacagtaaagcaatacaggtgtatttgtgtaatcatcagcaatgttctccaaaaactgtgcagctacactggaaaaacctcctgaatcatccacaataaactggatgccctgtggtaaattatgaatcaattaagctaaaaataatggtctcaaaatatgcatgatatcggaaatgatgtgcataagtgaacattagcttgttgcaaaactatagtagagtttgctgataattcactggggaaaagtaggacctgaatatggtcgcattcttcaacaaagaaccttagcctctcattcatttcctctatttgcgaccagtctgaaacaacctcttgtgcgctgccatagttatcaaacttgtcaaagtctgtccatgacccatgtaactcatataaactctgaggatgatactgaacttttgaataatccgtccaaaagttgacgttattctctagacagtcgatcaggtccttatcctcaacacttttctgggagttgctggcaccattgctagtgcttggattctgcccttcttcaactaagctttgcagaaacaagttccgcccatgaggttttgagactgatcttgttacacttccagacctacataaaccaggaaaaaatcatcatggtaatatatgagcccgacacattattcaatatataggtgcccctattctcgtcgatgatattagcatatagttactgatagcatgcatgacagcagcacataacaagcaacagcaggccaaaagatgaatgcaactctacgaaaataataggcagatgcaatgcatcacttccacagaagcaggatgggtatatgcatcgttactaccagtccattgctcccttattatcagcctaagagcagctcactgctagagcaaagctgctatatttgctatctgctttctttgacaatgcagacatgcttcctccatttgtcagaattatcccccagttgtagatacctaagcttatttaactctgtaacccatttgcacaagcaatcttatactaaactgaaacaacagtattcttctgcgtagcttgtacatgccaaattacagcgatcatttatgcatggtgggcacaataagaaaaaccaaacatggaagcatattctggagaagttagagcaccacttgccatgtagcaacattgagctgatctgcagaagcactggtctgaccgagattaccggatgaactcaaagaaccaagggaccctgcaaatgataccaccgtgaacacgcagccaacactatcagtaacaaaataacagttgttacacactacaatacttggatcaaattcacagtcagattacctcgagaaccaaccgacaccagacgagggcagtatgtgggtataccctggtgaaatcaagcattgtatgctagtagtcagtaagagatgagcagtagcagaaaaaaaataagtatattttccttaatgataaggacgagcggctctacctggtgcgtctcgccggagcggtagaggacgtccatgtccagcgcgtcgttcttgaagactgggtcggcgtcggggtcgtcggcgagcccgagcaactcatcctggagaagaagaccccaacaagaagaacaagaagcgtcagcgtcaggttcttgcaccaggtggagcaacaagttggggatcttgccggagacgagagagggggggggggctcacctggaagttccagaagtgggagccgacgtagttggcgaagccgccgacctgcaccgtcaccgcctccctcattgccgccgcccctcgccgagctcggcaagctcctgaaccgcaaccgcggcggcggagtcgacaaagaagtttctctcgcagcacaaatcaccacagatacgccggcgaggccgccccggtggggaatagcgccggcggcgaggtgctcagccaaacggcggcagcggcggcggcggccgtgacggggaggggagcggcgcgacaaatcgtggaggttttcccctcaccaccactgtgcaaaaaaaggcaggatttttcagcccaaacagaaaagggaaggcccatttcccctcccatcccttccccccgcgcgccgctcctcctcaccgagccgccgccgtcgctcctcctcgccccactgccgccgtcgccgctcctcctcctccttgcccgtcggccgtggatgcaggagacgaaggaggtgaggtggttgacggcggcggagtcaccgttgcctcctcctcccgacgccgtcgccccttcgcccgtcggccgtggaggggggagacgagggaggtgaggtggtcgacggcggcggcgtcaccgctgcctcctccaggcgccgccgccgcttcgctcgtcagcctccccgcgtgcgtctgcctccccgccgtagccgagaaatttgggatt
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| CDS seq | atgagggaggcggtgacggtgcaggtcggcggcttcgccaactacgtcggctcccacttctggaacttccaggatgagttgctcgggctcgccgacgaccccgacgccgacccagtcttcaagaacgacgcgctggacatggacgtcctctaccgctccggcgagacgcaccagggtatacccacatactgccctcgtctggtgtcggttggttctcgagggtcccttggttctttgagttcatccggtaatctcggtcagaccagtgcttctgcagatcagctcaatgttgctacatggtctggaagtgtaacaagatcagtctcaaaacctcatgggcggaacttgtttctgcaaagcttagttgaagaagggcagaatccaagcactagcaatggtgccagcaactcccagaaaagtgttgaggataaggacctgatcgactgtctagagaataacgtcaacttttggacggattattcaaaagttcagtatcatcctcagagtttatatgagttacatgggtcatggacagactttgacaagtttgataactatggcagcgcacaagaggttgtttcagactggtcgcaaatagaggaaatgaatgagaggctaagggatccaatgacccttggatcatccaggaggaatcaaagggagtccattatgagagctcttcatgatgctgtttcattttcaaaactttcgtccttttgcaacctgatggtacccataggaccgccttcattaagtagaagttacatgtcatcgtatctttatatacaagacgagaaaccattccatgctagtgctgtttgtgctgcagcaatacattcaattactgttccatttagattgcaacgaacgggcccgagttcagacttggcacattcatctggtaatcttgacattggtgaacttctgcacattttatctgatcaaggtcggcagaacatggttactgctctggatgtagcgatgcctgccccttctttgacagatagagatgctatggggaacatagagatgaagttgcactctttgacccctgaaatcagcgatgaggatgaagatccttattcagttgaatcgctggtggacttccatatcacaagtgaaagactcgtctatgaagccagagagacaaagccaaaattttcccatctctcagcatctctttgccccctccctgtcccccttccgttcccgtcaatcttcagaggcaacattggccggcatggggagatccttagcgaccatgcagaagaatcccagccaaagggctcacttgatattgaatcgataccgatggcggcacgattacgatcaagcagcgccgtcctgcctttcatagagaggcgatcggggagcctccagaagcacggtgtcgcaagaggtgccatcgggtctctggtcctccgtgactggggcttcgggagggaggaggtggaagacatggcggagcacctagcaaagttactcggcctgtttcaccctgaaatggatcttacttcggattctgactag
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| Protein seq | MREAVTVQVGGFANYVGSHFWNFQDELLGLADDPDADPVFKNDALDMDVLYRSGETHQGIPTYCPRLVSVGSRGSLGSLSSSGNLGQTSASADQLNVATWSGSVTRSVSKPHGRNLFLQSLVEEGQNPSTSNGASNSQKSVEDKDLIDCLENNVNFWTDYSKVQYHPQSLYELHGSWTDFDKFDNYGSAQEVVSDWSQIEEMNERLRDPMTLGSSRRNQRESIMRALHDAVSFSKLSSFCNLMVPIGPPSLSRSYMSSYLYIQDEKPFHASAVCAAAIHSITVPFRLQRTGPSSDLAHSSGNLDIGELLHILSDQGRQNMVTALDVAMPAPSLTDRDAMGNIEMKLHSLTPEISDEDEDPYSVESLVDFHITSERLVYEARETKPKFSHLSASLCPLPVPLPFPSIFRGNIGRHGEILSDHAEESQPKGSLDIESIPMAARLRSSSAVLPFIERRSGSLQKHGVARGAIGSLVLRDWGFGREEVEDMAEHLAKLLGLFHPEMDLTSDSD |
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| Function | Protein misato homolog 1 [UniProtKB/Swiss-Prot:Q2YDW2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0010140 | OsLiXu_03g0010140.01 | Chr03 | 7540484 | 7544541 | - | NAM | ||
| CDS seq | atgagggaggcggtgacggtgcaggtcggcggcttcgccaactacgtcggctcccacttctggaacttccaggatgagttgctcgggctcgccgacgaccccgacgccgacccagtcttcaagaacgacgcgctggacatggacgtcctctaccgctccggcgagacgcaccagggtatacccacatactgccctcgtctggtgtcggttggttctcgagggtcccttggttctttgagttcatccggtaatctcggtcagaccagtgcttctgcagatcagctcaatgttgctacatggtctggaagtgtaacaagatcagtctcaaaacctcatgggcggaacttgtttctgcaaagcttagttgaagaagggcagaatccaagcactagcaatggtgccagcaactcccagaaaagtgttgaggataaggacctgatcgactgtctagagaataacgtcaacttttggacggattattcaaaagttcagtatcatcctcagagtttatatgagttacatgggtcatggacagactttgacaagtttgataactatggcagcgcacaagaggttgtttcagactggtcgcaaatagaggaaatgaatgagaggctaagggatccaatgacccttggatcatccaggaggaatcaaagggagtccattatgagagctcttcatgatgctgtttcattttcaaaactttcgtccttttgcaacctgatggtacccataggaccgccttcattaagtagaagttacatgtcatcgtatctttatatacaagacgagaaaccattccatgctagtgctgtttgtgctgcagcaatacattcaattactgttccatttagattgcaacgaacgggcccgagttcagacttggcacattcatctggtaatcttgacattggtgaacttctgcacattttatctgatcaaggtcggcagaacatggttactgctctggatgtagcgatgcctgccccttctttgacagatagagatgctatggggaacatagagatgaagttgcactctttgacccctgaaatcagcgatgaggatgaagatccttattcagttgaatcgctggtggacttccatatcacaagtgaaagactcgtctatgaagccagagagacaaagccaaaattttcccatctctcagcatctctttgccccctccctgtcccccttccgttcccgtcaatcttcagaggcaacattggccggcatggggagatccttagcgaccatgcagaagaatcccagccaaagggctcacttgatattgaatcgataccgatggcggcacgattacgatcaagcagcgccgtcctgcctttcatagagaggcgatcggggagcctccagaagcacggtgtcgcaagaggtgccatcgggtctctggtcctccgtgactggggcttcgggagggaggaggtggaagacatggcggagcacctagcaaagttactcggcctgtttcaccctgaaatggatcttacttcggattctgactag
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| Protein seq | MREAVTVQVGGFANYVGSHFWNFQDELLGLADDPDADPVFKNDALDMDVLYRSGETHQGIPTYCPRLVSVGSRGSLGSLSSSGNLGQTSASADQLNVATWSGSVTRSVSKPHGRNLFLQSLVEEGQNPSTSNGASNSQKSVEDKDLIDCLENNVNFWTDYSKVQYHPQSLYELHGSWTDFDKFDNYGSAQEVVSDWSQIEEMNERLRDPMTLGSSRRNQRESIMRALHDAVSFSKLSSFCNLMVPIGPPSLSRSYMSSYLYIQDEKPFHASAVCAAAIHSITVPFRLQRTGPSSDLAHSSGNLDIGELLHILSDQGRQNMVTALDVAMPAPSLTDRDAMGNIEMKLHSLTPEISDEDEDPYSVESLVDFHITSERLVYEARETKPKFSHLSASLCPLPVPLPFPSIFRGNIGRHGEILSDHAEESQPKGSLDIESIPMAARLRSSSAVLPFIERRSGSLQKHGVARGAIGSLVLRDWGFGREEVEDMAEHLAKLLGLFHPEMDLTSDSD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0010140 | OsLiXu_03g0010140.02 | Chr03 | 7540393 | 7544929 | - | IsoSeq | ||
| CDS seq | atgaagccagagagacaaagccaaaattttcccatctctcagcatctctttgccccctccctgtcccccttccgttcccgtcaatcttcagaggcaacattggccggcatggggagatccttagcgaccatgcagaagaatcccagccaaagggctcacttgatattgaatcgataccgatggcggcacgattacgatcaagcagcgccgtcctgcctt
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| Protein seq | MKPERQSQNFPISQHLFAPSLSPFRSRQSSEATLAGMGRSLATMQKNPSQRAHLILNRYRWRHDYDQAAPSCL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.122404 | 0.265576 | 1.611237 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0240900 | RBH | 0.985632 | 0.953632 | 1.367843 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g13770 | RBH | 0.647190 | 0.622781 | 0.341890 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0240900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0010350 | RBH | 0.510264 | 7.042445 | 5.709345 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0010180 | RBH | 0.149892 | 0.000000 | 2.179010 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0010260 | RBH | 0.661632 | 2.641543 | 3.265172 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0010180 | RBH | 0.135107 | 0.179637 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0010060 | RBH | 5.070609 | 4.702157 | 9.218509 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0123500 | RBH | 9.2167615 | 18.6894845 | 38.472414 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0009960 | RBH | 0.154362 | 0.641708 | 1.231308 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0122700 | RBH | 11.343281 | 24.1136235 | 27.4241945 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0010090 | RBH | 0.383348 | 0.112845 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0010180 | RBH | 1.111357 | 3.505275 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0010070 | RBH | 4.007075 | 2.807916 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0010090 | RBH | 0.631197 | 3.779052 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G010110 | RBH | 0.621118 | 3.549767 | 2.949979 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0009980 | RBH | 0.636943 | 3.518150 | 3.069385 |
