Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0009560 | OGI:03018210 | 6/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:6997840-7000252 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcggcatcactactgtgtcttgacgagctcttcaaagtgtggtcaagaaatatcaattgaatcaaccattaactatttgaaagatgggctaggaaaagtgcataacgTtttttttttttggaatatatgcagtgttgaaccgcttaacggggtcatatgacccaggtaaattattcaatgataactactttatccgttttatattataagtcatttgacttttttaaaattattcgtgattaatcaaatttatagaaaaaatagtaacatctacgacacaaaattagttttattacatttaaaattgaatatattttgataatatatttgatatgtattgaaaatattattatattttttataagtttggtcaaacttaaaaataagtttgacaaaaaaaagtcaaacgacttgtaataagaaatagaaagagtaatttatatatcatgttaattagtatattagattttattaaaaatttggtacgtataggattatggtagttttttctgggttcaccactgatttaatgtgaacaatctcgatattgagagtatggccaatgtgaacaatctcgatattgagagtatggccgtgtttaaatactgtaaaaatttggctaaattttttttacgtatacgaaaatatatttgaagtattaaatgtagactactaacaaaacaagattccgactgtaaactgctagacgaatcttttgagcttaattaatctgtcattagcaaatgtagattgctgtagcacttatggctaatcatgatgtaattaggctcaaaagattcgtctcgtgatttatagtcgaactgtgcaattagtatttttttttcatatttgatgctctatacatgtgtccaaatatttgatgtgacggaaaaattcaaaaatttaaagaaaaaagttaaaatctaaacacagcctatagcacagctgactcactgttgcctgttggtttgttgtcagtagcgctaggcgctagctccctatcagtctatcgcagtcgcaggcaccaagcttttctgctgcttggtggttggtgctcgacgcgagcagcgcctgcatggccgcgcgttgcagtggggcgcactggcattaccctcaacgattgaaccacagcaaagcatcagggtcaaggaaaaggattctgccgaagctgtttcatgggttgtactacgattctaggtttattaggtcacgtacaatggtagccacaagcaattatggtctcaagacgtcaagtaggatagaatcacacaaaggtcacactacctacagtggaaaccactccaaaacgtattttgcatatcagcccctatctatttatatgtcagcccttgtattataaaacctattgaaactttatattttgaaccctagagtaaccaaaagaagtatatgtacacccctaaacaacctgggacccactgtcagtctcttcccatccctctcttttttattcccctctctctctcttcgatttttctccaccgacagccgcatcgtgtcgctcggttctcttctcctctcccctcccctcgccggtttctcccctcccctctccggcgcgaggtcgacggcggggagcagcggtggcgacgggtctggcggcggcgaggagcagcagtggaggcggatctggcggcgaggagctcgccggctgctcccctcccctccggcgcgggctcgccggctgctcccctcccctctcgagcgcgagctcgccggctgctcccctcctctctccggcacgagctcggcggcggggagtagcggtggcgccggatctggcggcggggagctcgccgactgctcccctcccctctccggggcgagctcggtggcagggagcaccggtggcgccggatctggcgacgacgacgaccacgacgacgaccatggcggctgcgttgatctggcagcgacgacgaccatggcggtggcagcagatttggtggcgacgacgaccatgacgagatggggatttggggcagttgcacgggggtccggacgaggcgacgaccggggctccgactcctccaacgcgaggcttcggctcgtggcttcacggctcccgagcgcaggcgcggtgcttctttcggtttttctacaagctcgctgcgcgcctgcgagaccacgagcgggcgtgccagctcagctcggctccgacgtagagccgtgagaccacaagctaaggtcatgcgttgtacatggcattagggaatggttgttctaacccaactaataatatatatgcatgtattgcacctacatagattacttgccaagaattttaggtagataccccatgtcctatgtcctatggtagatccgcccaaatcaacatatactatccattagtatttatattgccaaccgtttattgattttcgatggt
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| CDS seq | atggcggcatcactactgtcgacggcggggagcagcggtggcgacgggtctggcggcggcgaggagcagcagtggaggcggatctggcggcgaggagctcgccggctgctcccctcccctccggcgcgggctcgccggctgctcccctcccctctcgagcgcgagctcgccggctgctcccctcctctctccggcacgagctcggcggcggggagtagcggtggcgccggatctggcggcggggagctcgccgactgctcccctcccctctccggggcgagctcggtggcagggagcaccggtggcgccggatctggcgacgacgacgaccacgacgacgaccatggcggctgcgttgatctggcagcgacgacgaccatggcggtggcagcagatttggtggcgacgacgaccatgacgagatggggatttggggcagttgcacgggggtccggacgaggcgacgaccggggctccgactcctccaacgcgaggcttcggctcgtggcttcacggctcccgagcgcaggcgcggtgcttctttcggtttttctacaagctcgctgcgcgcctgcgagaccacgagcgggcgtgccagctcagctcggctccgacgtagagccgtga
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| Protein seq | MAASLLSTAGSSGGDGSGGGEEQQWRRIWRRGARRLLPSPPARARRLLPSPLERELAGCSPPLSGTSSAAGSSGGAGSGGGELADCSPPLSGASSVAGSTGGAGSGDDDDHDDDHGGCVDLAATTTMAVAADLVATTTMTRWGFGAVARGSGRGDDRGSDSSNARLRLVASRLPSAGAVLLSVFLQARCAPARPRAGVPAQLGSDVEP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0009560 | OsLiXu_03g0009560.01 | Chr03 | 6997840 | 7000036 | + | NAM | ||
| CDS seq | atggcggcatcactactgtcgacggcggggagcagcggtggcgacgggtctggcggcggcgaggagcagcagtggaggcggatctggcggcgaggagctcgccggctgctcccctcccctccggcgcgggctcgccggctgctcccctcccctctcgagcgcgagctcgccggctgctcccctcctctctccggcacgagctcggcggcggggagtagcggtggcgccggatctggcggcggggagctcgccgactgctcccctcccctctccggggcgagctcggtggcagggagcaccggtggcgccggatctggcgacgacgacgaccacgacgacgaccatggcggctgcgttgatctggcagcgacgacgaccatggcggtggcagcagatttggtggcgacgacgaccatgacgagatggggatttggggcagttgcacgggggtccggacgaggcgacgaccggggctccgactcctccaacgcgaggcttcggctcgtggcttcacggctcccgagcgcaggcgcggtgcttctttcggtttttctacaagctcgctgcgcgcctgcgagaccacgagcgggcgtgccagctcagctcggctccgacgtagagccgtga
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| Protein seq | MAASLLSTAGSSGGDGSGGGEEQQWRRIWRRGARRLLPSPPARARRLLPSPLERELAGCSPPLSGTSSAAGSSGGAGSGGGELADCSPPLSGASSVAGSTGGAGSGDDDDHDDDHGGCVDLAATTTMAVAADLVATTTMTRWGFGAVARGSGRGDDRGSDSSNARLRLVASRLPSAGAVLLSVFLQARCAPARPRAGVPAQLGSDVEP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0009560 | OsLiXu_03g0009560.02 | Chr03 | 6999344 | 7000252 | + | IsoSeq | ||
| CDS seq | ccgacagccgcatcgtgtcgctcggttctcttctcctctcccctcccctcgccggtttctcccctcccctctccggcgcgaggtcgacggcggggagcagcggtggcgacgggtctggcggcggcgaggagcagcagtggaggcggatctggcggcgaggagctcgccggctgctcccctcccctccggcgcgggctcgccggctgctcccctcccctctcgagcgcgagctcgccggctgctcccctcctctctccggcacgagctcggcggcggggagtagcggtggcgccggatctggcggcggggagctcgccgactgctcccctcccctctccggggcgagctcggtggcagggagcaccggtggcgccggatctggcgacgacgacgaccacgacgacgaccatggcggctgcgttgatctggcagcgacgacgaccatggcggtggcagcagatttggtggcgacgacga
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| Protein seq | PTAASCRSVLFSSPLPSPVSPLPSPARGRRRGAAVATGLAAARSSSGGGSGGEELAGCSPPLRRGLAGCSPPLSSASSPAAPLLSPARARRRGVAVAPDLAAGSSPTAPLPSPGRARWQGAPVAPDLATTTTTTTTMAAALIWQRRRPWRWQQIWWRRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.248225 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0009750 | RBH | 0.0 | 3.147014 | 2.813012 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0009600 | RBH | 0.0 | 0.0 | 0.958397 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0009650 | RBH | 0.462282 | 0.902467 | 2.124770 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0114100 | RBH | 2.104421 | 7.6077475 | 15.2839395 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0011920 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0009490 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0009570 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
