Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0008300 | OGI:03016010 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:5962959-5965321 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggaggcggccaccccgacccgccctccccacgccgccccgtcctcctccccgtccccgtcgccggcgtcgctgcgccagtggcggccggcggcgcagcgcaacctgcggaaccagtggtcgcgcctgctcgccgccaaggcccggtggctgtccgccgccgccgacggccgctcccacgcctccgccctcgtcaacgcccacctctcccgcaggcaagtccaccactctctctctctctctctccgccaccatgccccggtatttccttcgtggtggtttggggggtttgggttttactagctgacgatgggcgtgttgctgcgtagttacaggtacatgccgggcatggatttgggggtgctcaaggacatgcccgggatccgcgagaaggcgagcggtaagcttgcgcgcagggaggtaatcatcgccatcatttcggtgaattttgcctatgaagtgtttgtatgtctcctgatctgctctgctatcttgctttgttcaggagcaatgccagagcatgcttctatcggcctatagggagatggtaagggcgtaaggctgtgcttggtcgaaactctcattgactgttcaatccaaagattggataccgcaaagcatggccggttcatgtgatagttcttcttgtttcacctgttaacaggtccttgctacggccgagttggttagagcttctcactctatgcgttgtttttccaaagtagccgcgaatagtccgttgatacggtttactgagcgccaagatgatatgaatgattcgggggacggaggaggatcccctgtattcaaatggttctccgtattagaattcggtgggttattcattttgtttcaatgcaaaacctgatttaagttagcatgcccccttcttttactctctggtcgatatgacatccaaccaactaagcgcgtataatctctgaagaacatttcctcgaagtcatgttgctgcgtaccaggtacatgccgggcgtagattataattagcaaactgattcttagtttgcatataatattcggtttaacagtatcccatggatcagtatctagttttttatgtttttcctggTtttttttattggacgatcctctttcagatcctcccagtgaaaatacattgcttttaatcaaacaagataaactcctgaatttaaattcgtttatttgtggtttatcacagagaatcttgctcaagaacttgtcgatatgttcatttcagaactgcaattgaaggtatatcgagagttctttttctattgttctatggtgatgcttattgattccagaaacagcatgtgcatttacttttagctttttttagccagtacaaatattggttttattatacttgcctgcttccttgttactttgggaaccttcctgacaatggaaattgtttccatatcacagagattgcttgtcttggaactcctctcggtaaccttcaaggaaggtgtacaacatgacgcatcattagaatggtccaatgagctatttgatggggagttcaatgagtttcagagtattggccttctgtcaggagatagctacgcactgcccaaaaattggagtgctggtgtctcaaaggcatggcaacctgatcaaaccccatcccatgaggttttacaggtacaggttgatgttttgagatttttttttttttgaaaccttatgttttgagaattttggcatttaagacagaagaaagctcaattgatcctgtcttgattcatatattttacatcttctgtctggttgtcttcatagtaaagacaaagttgtcttatgtatataaagagttaattaatagtccatcgtttgattggatttttttgtgcaaaagttagcatattgggtttatatcttttaactgctccagagtttcttttgcaggtttatttgacttcttggcttgctaatgtgaacatcaagacaagcaggtaatcatattattgtattattttatcttatggatttcataaactaagaactatagttattgaatcttgaaaataaaacatatctttttttcctcaaccttttgttatcatgaagttttcgcttctggcttgatgtcataacttgtgtgatagtaacagtgactttgcactatttcagaattgatgaaatatttgagcttgtcggggaggagatgcagataaaattgtcttgaggattctgatgcgtatgacttataagtaagaaaagttgatctatcctcctgtttgtggtttcgtttccttggaagtcctaaatgctaaaaccttatgtaatctgctcgaaccccaagggagaaaaccattctctcataatttagattttacaaacagaaagtttaacac
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| CDS seq | atggaggcggccaccccgacccgccctccccacgccgccccgtcctcctccccgtccccgtcgccggcgtcgctgcgccagtggcggccggcggcgcagcgcaacctgcggaaccagtggtcgcgcctgctcgccgccaaggcccggtggctgtccgccgccgccgacggccgctcccacgcctccgccctcgtcaacgcccacctctcccgcaggcaactgacgatgggcgtgttgctgcgtagttacaggtacatgccgggcatggatttgggggtgctcaaggacatgcccgggatccgcgagaaggcgagcggtaagcttgcgcgcagggaggagcaatgccagagcatgcttctatcggcctatagggagatggtccttgctacggccgagttggttagagcttctcactctatgcgttgtttttccaaagtagccgcgaatagtccgttgatacggtttactgagcgccaagatgatatgaatgattcgggggacggaggaggatcccctgtattcaaatggttctccgtattagaattcgagaatcttgctcaagaacttgtcgatatgttcatttcagaactgcaattgaagagattgcttgtcttggaactcctctcggtaaccttcaaggaaggtgtacaacatgacgcatcattagaatggtccaatgagctatttgatggggagttcaatgagtttcagagtattggccttctgtcaggagatagctacgcactgcccaaaaattggagtgctggtgtctcaaaggcatggcaacctgatcaaaccccatcccatgaggttttacaggtttatttgacttcttggcttgctaatgtgaacatcaagacaagcagaattgatgaaatatttgagcttgtcggggaggagatgcagataaaattgtcttga
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| Protein seq | MEAATPTRPPHAAPSSSPSPSPASLRQWRPAAQRNLRNQWSRLLAAKARWLSAAADGRSHASALVNAHLSRRQLTMGVLLRSYRYMPGMDLGVLKDMPGIREKASGKLARREEQCQSMLLSAYREMVLATAELVRASHSMRCFSKVAANSPLIRFTERQDDMNDSGDGGGSPVFKWFSVLEFENLAQELVDMFISELQLKRLLVLELLSVTFKEGVQHDASLEWSNELFDGEFNEFQSIGLLSGDSYALPKNWSAGVSKAWQPDQTPSHEVLQVYLTSWLANVNIKTSRIDEIFELVGEEMQIKLS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0008300 | OsLiXu_03g0008300.01 | Chr03 | 5962959 | 5965321 | + | NAM | ||
| CDS seq | atggaggcggccaccccgacccgccctccccacgccgccccgtcctcctccccgtccccgtcgccggcgtcgctgcgccagtggcggccggcggcgcagcgcaacctgcggaaccagtggtcgcgcctgctcgccgccaaggcccggtggctgtccgccgccgccgacggccgctcccacgcctccgccctcgtcaacgcccacctctcccgcaggcaactgacgatgggcgtgttgctgcgtagttacaggtacatgccgggcatggatttgggggtgctcaaggacatgcccgggatccgcgagaaggcgagcggtaagcttgcgcgcagggaggagcaatgccagagcatgcttctatcggcctatagggagatggtccttgctacggccgagttggttagagcttctcactctatgcgttgtttttccaaagtagccgcgaatagtccgttgatacggtttactgagcgccaagatgatatgaatgattcgggggacggaggaggatcccctgtattcaaatggttctccgtattagaattcgagaatcttgctcaagaacttgtcgatatgttcatttcagaactgcaattgaagagattgcttgtcttggaactcctctcggtaaccttcaaggaaggtgtacaacatgacgcatcattagaatggtccaatgagctatttgatggggagttcaatgagtttcagagtattggccttctgtcaggagatagctacgcactgcccaaaaattggagtgctggtgtctcaaaggcatggcaacctgatcaaaccccatcccatgaggttttacaggtttatttgacttcttggcttgctaatgtgaacatcaagacaagcagaattgatgaaatatttgagcttgtcggggaggagatgcagataaaattgtcttga
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| Protein seq | MEAATPTRPPHAAPSSSPSPSPASLRQWRPAAQRNLRNQWSRLLAAKARWLSAAADGRSHASALVNAHLSRRQLTMGVLLRSYRYMPGMDLGVLKDMPGIREKASGKLARREEQCQSMLLSAYREMVLATAELVRASHSMRCFSKVAANSPLIRFTERQDDMNDSGDGGGSPVFKWFSVLEFENLAQELVDMFISELQLKRLLVLELLSVTFKEGVQHDASLEWSNELFDGEFNEFQSIGLLSGDSYALPKNWSAGVSKAWQPDQTPSHEVLQVYLTSWLANVNIKTSRIDEIFELVGEEMQIKLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.422402 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0213200 | RBH | 0.711694 | 0.588289 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g11450 | RBH | 0.481285 | 0.474808 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0213200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0008350 | RBH | 0.000000 | 0.000000 | 1.533595 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0008320 | RBH | 0.0 | 0.0 | 0.287852 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0008400 | RBH | 0.612793 | 0.0 | 0.607429 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0008420 | RBH | 0.000000 | 0.054116 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0008280 | RBH | 0.0 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0100100 | RBH | 0.8373195 | 3.578303 | 5.369231 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0008210 | RBH | 0.066579 | 0.121580 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0100400 | RBH | 0.958077 | 5.540808 | 6.516885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0008250 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0008310 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0008280 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0008260 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G008300 | RBH | 0.202446 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0008170 | RBH | 0.700653 | 0.0 | 1.397889 |
