Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0008140 | OGI:03015760 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:5869736-5872492 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | attgctgctctctcttctcctcttctcttctccctcttcctcttctccaccctcctatccgttctagcgaaggaccaaatttctcaccagatttcctgccgattttcccctcatgagccagccgaatccctcttccagcgtgatttccaggatccctttgtcttgttgagagatttttgcaggtttcgtttgcatttgcggggcgggcatatatggctgcagtgtggagcggctgcagcacgagcttcagccaagaacttcccccacacccgcgtggaagaaggggcggtgatggggcaagaatccatccatggagcggaggagcgggcagagacgccaccacccgccatgcggaagctgcaaggaccgtggttgtcttcgccagagggcgcgtgcgcgtgtgcagggcggcggctccatgcgttcttgaacccgacgtcgccggcaaggaggaggtcggtgtggcggtttggggcatggacgatgagccgccggtcgctgatggtcaccggaggcacgggctgcggcggcgcccggtgaggccggctgctgtggaggaaggccccgtcgccgcagcaagaagcgcggcgtcggcgtcggcgtcagccgcggggagcaaatctgaggtcgggggatcgaggctgcacttcttggaggagagggatgaggagatgctgtccaggaggttgatcaagctcagccagtccaacaaggtcaggagtgccaccgagctgttcgattcaatgcgtgcctcaggcttgcagccgagcgcgcatgcctgtaactcccttctggcttgttttgtgcgaaggggttctttcgccgatgcgatgaaggtattcgagttcatgaaggggaaaggaatggcaaccgggcattcgtacaccttgatactcaaggctgttgccactactgagggctactttgcagccctgaaaatgtttgatgaaattgaagagagcgataagaagaatgtcgatgtgatcgtttacaacacggtgatatctgtgtgcggaagagcgaaagactggaggcaggtggagagactttggagaaggctaggggataattctttgagtggaaccttgatgacttatgatttgttagttagcacatttgtccagtgtgggcagtctgagttagcagttgatgcttatcaggaaatgttcaaaagtggtattgatccaagtgaagatatactgaaggccatcattgcatcatgtacaaaagaagggaaatgggagtttgcacttaccacattcaggagaatgttgagtgctggaatgaaacctagtatcattgtgttcaattccataatcaactcacttggtaaggccggtgaagatgaacttgcctttaggatgtatcatctgctaacatcttcaggccttaagcctgatcaatatacatggagtgctttactgtcagcgttatataggtctggtcgttgttgggatgtcctagatctttttcaaggaattaagaccaagcattcagcactcttaaataaccatctgtacaacatagctttgatgtcttgtgaaagacttggtcaatgggaacatggcttgcaattgttatggatgatggaaagaggtggacttcaaatatcggcggtttcatacaatcatgtgataggtgcttgtgaagttgctaggatgccaaaagttgctctgaaagtgtaccggcgtatgactcatcgagggtgttcaccagacacgttcacacatttatctgttataagagcttgcatatggggatctctttggaatgaagttgaggatatattggaggtactacttcctttctttgctttatacttctgttcagatggccaaaaaaaataggatttctcattgcttagcatgcgttagtctaccatgctggtacctaaagcatgattaacagaattagtggcactctgacccctgcttggttagggcaaaaattcctgttcctaggtgtaagcatgttgtagattgcagtaccattattccacgcagagaaacaaagaaaatgaaaacactaaacaagctcttatatttttgctgccaatatgaaaaaatattttgattggttaaggcaagtgattcctatgattctgcctttgtcctgaaagcccagcgaaccgtaactaatgttttctacgtctgtttgacgttttccggtttccaatgtttctgttaccatgattcagaataacacgtatgctaaaacatacagtatacatatagcttcttgtttcctcacccattcatcatgctaacattaaggacaaagcatgcctaaatttctgcagttcctcttttttggtgtttgtaaaatcgtacctagttagcccacggtagcatttaaatacatgatgttcaactttcatgacatattactctctgcaattttgatacttccaaatggaccgaatcgcatatttcattcgtttcaccttatatgaactttgaaccttgcaggaggtcgctccagactcctcggtctacaacacggtaattcacgggctttgtctgcgaggcaagatcagattagcgaggaaggtatacacgaaaatgcggagcattgggctgaaaccagatggcaagaccaggtcgttcatgctgcagaatttagccactgactactagcagtataatgtccctgagaaaacactagtttgtagttcagtcagtagctgtacagatccaaacgaagcataaaaaaaaaaccactatatgtaacctgctgtcactattctgaatcaagcag
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| CDS seq | atggctgcagtgtggagcggctgcagcacgagcttcagccaagaacttcccccacacccgcgtggaagaaggggcggtgatggggcaagaatccatccatggagcggaggagcgggcagagacgccaccacccgccatgcggaagctgcaaggaccgtggttgtcttcgccagagggcgcgtgcgcgtgtgcagggcggcggctccatgcgttcttgaacccgacgtcgccggcaaggaggaggtcggtgtggcggtttggggcatggacgatgagccgccggtcgctgatggtcaccggaggcacgggctgcggcggcgcccggtgaggccggctgctgtggaggaaggccccgtcgccgcagcaagaagcgcggcgtcggcgtcggcgtcagccgcggggagcaaatctgaggtcgggggatcgaggctgcacttcttggaggagagggatgaggagatgctgtccaggaggttgatcaagctcagccagtccaacaaggtcaggagtgccaccgagctgttcgattcaatgcgtgcctcaggcttgcagccgagcgcgcatgcctgtaactcccttctggcttgttttgtgcgaaggggttctttcgccgatgcgatgaaggtattcgagttcatgaaggggaaaggaatggcaaccgggcattcgtacaccttgatactcaaggctgttgccactactgagggctactttgcagccctgaaaatgtttgatgaaattgaagagagcgataagaagaatgtcgatgtgatcgtttacaacacggtgatatctgtgtgcggaagagcgaaagactggaggcaggtggagagactttggagaaggctaggggataattctttgagtggaaccttgatgacttatgatttgttagttagcacatttgtccagtgtgggcagtctgagttagcagttgatgcttatcaggaaatgttcaaaagtggtattgatccaagtgaagatatactgaaggccatcattgcatcatgtacaaaagaagggaaatgggagtttgcacttaccacattcaggagaatgttgagtgctggaatgaaacctagtatcattgtgttcaattccataatcaactcacttggtaaggccggtgaagatgaacttgcctttaggatgtatcatctgctaacatcttcaggccttaagcctgatcaatatacatggagtgctttactgtcagcgttatataggtctggtcgttgttgggatgtcctagatctttttcaaggaattaagaccaagcattcagcactcttaaataaccatctgtacaacatagctttgatgtcttgtgaaagacttggtcaatgggaacatggcttgcaattgttatggatgatggaaagaggtggacttcaaatatcggcggtttcatacaatcatgtgataggtgcttgtgaagttgctaggatgccaaaagttgctctgaaagtgtaccggcgtatgactcatcgagggtgttcaccagacacgttcacacatttatctgttataagagcttgcatatggggatctctttggaatgaagttgaggatatattggaggaggtcgctccagactcctcggtctacaacacggtaattcacgggctttgtctgcgaggcaagatcagattagcgaggaaggtatacacgaaaatgcggagcattgggctgaaaccagatggcaagaccaggtcgttcatgctgcagaatttagccactgactactag
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| Protein seq | MAAVWSGCSTSFSQELPPHPRGRRGGDGARIHPWSGGAGRDATTRHAEAARTVVVFARGRVRVCRAAAPCVLEPDVAGKEEVGVAVWGMDDEPPVADGHRRHGLRRRPVRPAAVEEGPVAAARSAASASASAAGSKSEVGGSRLHFLEERDEEMLSRRLIKLSQSNKVRSATELFDSMRASGLQPSAHACNSLLACFVRRGSFADAMKVFEFMKGKGMATGHSYTLILKAVATTEGYFAALKMFDEIEESDKKNVDVIVYNTVISVCGRAKDWRQVERLWRRLGDNSLSGTLMTYDLLVSTFVQCGQSELAVDAYQEMFKSGIDPSEDILKAIIASCTKEGKWEFALTTFRRMLSAGMKPSIIVFNSIINSLGKAGEDELAFRMYHLLTSSGLKPDQYTWSALLSALYRSGRCWDVLDLFQGIKTKHSALLNNHLYNIALMSCERLGQWEHGLQLLWMMERGGLQISAVSYNHVIGACEVARMPKVALKVYRRMTHRGCSPDTFTHLSVIRACIWGSLWNEVEDILEEVAPDSSVYNTVIHGLCLRGKIRLARKVYTKMRSIGLKPDGKTRSFMLQNLATDY |
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| Function | Pentatricopeptide repeat-containing protein At3g29290 [UniProtKB/Swiss-Prot:Q84J46] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0008140 | OsLiXu_03g0008140.01 | Chr03 | 5869736 | 5872492 | + | NAM | ||
| CDS seq | atggctgcagtgtggagcggctgcagcacgagcttcagccaagaacttcccccacacccgcgtggaagaaggggcggtgatggggcaagaatccatccatggagcggaggagcgggcagagacgccaccacccgccatgcggaagctgcaaggaccgtggttgtcttcgccagagggcgcgtgcgcgtgtgcagggcggcggctccatgcgttcttgaacccgacgtcgccggcaaggaggaggtcggtgtggcggtttggggcatggacgatgagccgccggtcgctgatggtcaccggaggcacgggctgcggcggcgcccggtgaggccggctgctgtggaggaaggccccgtcgccgcagcaagaagcgcggcgtcggcgtcggcgtcagccgcggggagcaaatctgaggtcgggggatcgaggctgcacttcttggaggagagggatgaggagatgctgtccaggaggttgatcaagctcagccagtccaacaaggtcaggagtgccaccgagctgttcgattcaatgcgtgcctcaggcttgcagccgagcgcgcatgcctgtaactcccttctggcttgttttgtgcgaaggggttctttcgccgatgcgatgaaggtattcgagttcatgaaggggaaaggaatggcaaccgggcattcgtacaccttgatactcaaggctgttgccactactgagggctactttgcagccctgaaaatgtttgatgaaattgaagagagcgataagaagaatgtcgatgtgatcgtttacaacacggtgatatctgtgtgcggaagagcgaaagactggaggcaggtggagagactttggagaaggctaggggataattctttgagtggaaccttgatgacttatgatttgttagttagcacatttgtccagtgtgggcagtctgagttagcagttgatgcttatcaggaaatgttcaaaagtggtattgatccaagtgaagatatactgaaggccatcattgcatcatgtacaaaagaagggaaatgggagtttgcacttaccacattcaggagaatgttgagtgctggaatgaaacctagtatcattgtgttcaattccataatcaactcacttggtaaggccggtgaagatgaacttgcctttaggatgtatcatctgctaacatcttcaggccttaagcctgatcaatatacatggagtgctttactgtcagcgttatataggtctggtcgttgttgggatgtcctagatctttttcaaggaattaagaccaagcattcagcactcttaaataaccatctgtacaacatagctttgatgtcttgtgaaagacttggtcaatgggaacatggcttgcaattgttatggatgatggaaagaggtggacttcaaatatcggcggtttcatacaatcatgtgataggtgcttgtgaagttgctaggatgccaaaagttgctctgaaagtgtaccggcgtatgactcatcgagggtgttcaccagacacgttcacacatttatctgttataagagcttgcatatggggatctctttggaatgaagttgaggatatattggaggaggtcgctccagactcctcggtctacaacacggtaattcacgggctttgtctgcgaggcaagatcagattagcgaggaaggtatacacgaaaatgcggagcattgggctgaaaccagatggcaagaccaggtcgttcatgctgcagaatttagccactgactactag
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| Protein seq | MAAVWSGCSTSFSQELPPHPRGRRGGDGARIHPWSGGAGRDATTRHAEAARTVVVFARGRVRVCRAAAPCVLEPDVAGKEEVGVAVWGMDDEPPVADGHRRHGLRRRPVRPAAVEEGPVAAARSAASASASAAGSKSEVGGSRLHFLEERDEEMLSRRLIKLSQSNKVRSATELFDSMRASGLQPSAHACNSLLACFVRRGSFADAMKVFEFMKGKGMATGHSYTLILKAVATTEGYFAALKMFDEIEESDKKNVDVIVYNTVISVCGRAKDWRQVERLWRRLGDNSLSGTLMTYDLLVSTFVQCGQSELAVDAYQEMFKSGIDPSEDILKAIIASCTKEGKWEFALTTFRRMLSAGMKPSIIVFNSIINSLGKAGEDELAFRMYHLLTSSGLKPDQYTWSALLSALYRSGRCWDVLDLFQGIKTKHSALLNNHLYNIALMSCERLGQWEHGLQLLWMMERGGLQISAVSYNHVIGACEVARMPKVALKVYRRMTHRGCSPDTFTHLSVIRACIWGSLWNEVEDILEEVAPDSSVYNTVIHGLCLRGKIRLARKVYTKMRSIGLKPDGKTRSFMLQNLATDY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.150341 | 0.114663 | 0.967316 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0211600 | RBH | 4.583029 | 3.692477 | 1.826185 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g11310 | RBH | 3.082775 | 2.460559 | 0.451822 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0211600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0008210 | RBH | 0.856335 | 0.0 | 1.788005 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0008180 | RBH | 0.313461 | 0.0 | 0.649592 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0008260 | RBH | 2.535803 | 0.0 | 2.062480 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0008250 | RBH | 0.513679 | 0.056827 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0008120 | RBH | 6.772858 | 1.658549 | 4.313056 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0098400 | RBH | 6.6928115 | 1.8272115 | 3.5692685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0008060 | RBH | 0.806358 | 0.0 | 0.237270 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0099100 | RBH | 8.1644625 | 1.4755775 | 6.339497 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0008080 | RBH | 0.279302 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0008150 | RBH | 0.817230 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0008130 | RBH | 6.925225 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0008110 | RBH | 0.443815 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G008150 | RBH | 0.602435 | 0.000000 | 0.510737 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0008020 | RBH | 3.200472 | 0.0 | 4.132410 |
