Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0007780 | OGI:03015190 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:5664146-5666872 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcggagctggtgccgcaggtcgtcggcgccgtgagccgcagcatcgccggccgcctgctcgccgacatcgacctcgccagcagcgtcggcacgaacgtcgaggacgtcaccgacgcgctcacacggctgacgtcgatacgggccgacctcgaggcctccatggggaggctgccgcagcggcggcggccggaggaggtcacggactggctgtcgcgggtggacggcgccgagaagcgggtggccaagctccggcgagagtaccagcgccggtgttgctcctgcggcggcggcggcgccttctcgctcaacctgttcgcgagctacgccattagccggcgcgcgtgccacgagcgccaccgtctcgccgcgctgctcggggagtgcgacagggtgaggagcctcgccgccggggcgccccggccgtcgtccggcgccatggtcgtgccgtccacggtggtcggcatggagggctacctcgaggaggccctggcgtgcctcgacgaccgcgacgccggtgtcgtggccatctgcggcatggccggcgtcggcaagagcacgctgctgcgacgcatcaacaacgtgttcgtccaggaccccgacaggaggcacgagttcgactacgtcatatggctcgacgcgccgggcgactgcgccgccgtgggcaagatgcaggacgccatggctcaccggctcggcctgtgcgcgctcccggacggcggcgcgccggaccaccgtgcgcgtccgatctttgaagtcctcagggactcgagcttcttgctgctgctcgacggcgtaaccaagcctgtcgacttggtggacatcggcgtcccgcacctcgtgcacgacgatcgccggaggcagaaggtcgccatgaccacccgaacaaggggagtctgcggcaggatgagctcgtcgcgaaggattgacatgcaatgcttggacagtgaccattcatggcgtctgttcagagagatcgcccgcgacgagacgatcaacgccgacccgaggataccggacttggcgaaggaggtcgccgggaggtgcggcggcttgccgcttgtgctcaccgccatcggcggcgccatgaggtgcaggaggcagccagaggagtgggtgagcacggtgaccgcgctcaggaacttggagctcgccaagatccccgggatggacgccggcgagaagccaggcgccatgctgcgatcgctgcaagagagctacggcgacctgcgccatcccgtgctccagaagtgcttcctcgccacgtccctgtggcccgagggccacgccattgacaagggcgagctcgtcgagtgctggatcggcctcgggctggtgggcgagtcgctgccgatggacgaggccgtgcgcacggggctcgccgtcctcaacgagctcgaggaggccaacctgctgctgcccggcgacgccacgggcgaggtgaagctgcacggcgtcgtgaggggcgcggcgctgtggatcgcccgtgacctcggcaaggcgccgaacaggtgggtggtgtgcaccggcggcgtctccctccggtcgaggcagaagctagtggagttcttcgagcgcgcgcgcgacgcggagcgggtgtccgccatgcgcagctcggtcgagcggctgcgggcaatgccgccgccgtcgtccccgtgccggagcctctccgtcctcatgctgcagcacaacgcggcgctgcgtgacatccccggcggcttcctgctcggcgtgccggcgctcgcgtacctggacgcgtccttcaccggcgtccgcgaggtcgccccggagatcggcacgctcgcgtcgctgcgttacctgaacctgtcgtcgacgccgctggagtccgtgccgccggagctggggaggctgcggcagctcaggcacctgctgctgcggcacacggcgcgcctctcggcgttccccgccggcgtgctgcgtgggctgccgagcctggacgtcctcgacgtgtgcccgagcaggtacaccgagtggtgcggcgcgggaggaggaggaggaggagcgagcctggacgagctgaggtcgagctcggcgttcgtccggtccctcgggatcgccgtcgcgacgctcgccggcctacgcgcgctgcgcggcctcgacaacgtgcgcacacggcggctgaccgtgacgcgggtggcggcgaccgcgccgtccgtcgcgctgcgcccctccatgctgggcctgctcgaggccctgcacgagctcaccgtcgccaagtgctccggcctgcaggagctggaggttgtcgccggcgaggaggacaacgcatggtggcgccttccggagctcaggaagctcgagatcgatgagctgaacgagctggcggccgtgcggtggacgcggacggacgtcggggcgttcttgccggcgctccggtgggtgaagatctcacactgcaacaggctaaggaacgtgagctgggcggtgcagctgccatgcctggagcagctggagcttcgccattgctcggagatggttcacgtcgtagacattgacggcgacgacgaggagcagcgacgagagcacccggagacgcgcacgttccgctgcctcaggaggctgctgctggtggagcttccgtcgatgggcagcattggtggtggtgcagcgctgagcttcccttggttggagaccctggagatcgccggctgcgacagcctcggagagctacctgttgagctgcaaaaaaagttgaaggagatttga
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| CDS seq | atggcggagctggtgccgcaggtcgtcggcgccgtgagccgcagcatcgccggccgcctgctcgccgacatcgacctcgccagcagcgtcggcacgaacgtcgaggacgtcaccgacgcgctcacacggctgacgtcgatacgggccgacctcgaggcctccatggggaggctgccgcagcggcggcggccggaggaggtcacggactggctgtcgcgggtggacggcgccgagaagcgggtggccaagctccggcgagagtaccagcgccggtgttgctcctgcggcggcggcggcgccttctcgctcaacctgttcgcgagctacgccattagccggcgcgcgtgccacgagcgccaccgtctcgccgcgctgctcggggagtgcgacagggtgaggagcctcgccgccggggcgccccggccgtcgtccggcgccatggtcgtgccgtccacggtggtcggcatggagggctacctcgaggaggccctggcgtgcctcgacgaccgcgacgccggtgtcgtggccatctgcggcatggccggcgtcggcaagagcacgctgctgcgacgcatcaacaacgtgttcgtccaggaccccgacaggaggcacgagttcgactacgtcatatggctcgacgcgccgggcgactgcgccgccgtgggcaagatgcaggacgccatggctcaccggctcggcctgtgcgcgctcccggacggcggcgcgccggaccaccgtgcgcgtccgatctttgaagtcctcagggactcgagcttcttgctgctgctcgacggcgtaaccaagcctgtcgacttggtggacatcggcgtcccgcacctcgtgcacgacgatcgccggaggcagaaggtcgccatgaccacccgaacaaggggagtctgcggcaggatgagctcgtcgcgaaggattgacatgcaatgcttggacagtgaccattcatggcgtctgttcagagagatcgcccgcgacgagacgatcaacgccgacccgaggataccggacttggcgaaggaggtcgccgggaggtgcggcggcttgccgcttgtgctcaccgccatcggcggcgccatgaggtgcaggaggcagccagaggagtgggtgagcacggtgaccgcgctcaggaacttggagctcgccaagatccccgggatggacgccggcgagaagccaggcgccatgctgcgatcgctgcaagagagctacggcgacctgcgccatcccgtgctccagaagtgcttcctcgccacgtccctgtggcccgagggccacgccattgacaagggcgagctcgtcgagtgctggatcggcctcgggctggtgggcgagtcgctgccgatggacgaggccgtgcgcacggggctcgccgtcctcaacgagctcgaggaggccaacctgctgctgcccggcgacgccacgggcgaggtgaagctgcacggcgtcgtgaggggcgcggcgctgtggatcgcccgtgacctcggcaaggcgccgaacaggtgggtggtgtgcaccggcggcgtctccctccggtcgaggcagaagctagtggagttcttcgagcgcgcgcgcgacgcggagcgggtgtccgccatgcgcagctcggtcgagcggctgcgggcaatgccgccgccgtcgtccccgtgccggagcctctccgtcctcatgctgcagcacaacgcggcgctgcgtgacatccccggcggcttcctgctcggcgtgccggcgctcgcgtacctggacgcgtccttcaccggcgtccgcgaggtcgccccggagatcggcacgctcgcgtcgctgcgttacctgaacctgtcgtcgacgccgctggagtccgtgccgccggagctggggaggctgcggcagctcaggcacctgctgctgcggcacacggcgcgcctctcggcgttccccgccggcgtgctgcgtgggctgccgagcctggacgtcctcgacgtgtgcccgagcaggtacaccgagtggtgcggcgcgggaggaggaggaggaggagcgagcctggacgagctgaggtcgagctcggcgttcgtccggtccctcgggatcgccgtcgcgacgctcgccggcctacgcgcgctgcgcggcctcgacaacgtgcgcacacggcggctgaccgtgacgcgggtggcggcgaccgcgccgtccgtcgcgctgcgcccctccatgctgggcctgctcgaggccctgcacgagctcaccgtcgccaagtgctccggcctgcaggagctggaggttgtcgccggcgaggaggacaacgcatggtggcgccttccggagctcaggaagctcgagatcgatgagctgaacgagctggcggccgtgcggtggacgcggacggacgtcggggcgttcttgccggcgctccggtgggtgaagatctcacactgcaacaggctaaggaacgtgagctgggcggtgcagctgccatgcctggagcagctggagcttcgccattgctcggagatggttcacgtcgtagacattgacggcgacgacgaggagcagcgacgagagcacccggagacgcgcacgttccgctgcctcaggaggctgctgctggtggagcttccgtcgatgggcagcattggtggtggtgcagcgctgagcttcccttggttggagaccctggagatcgccggctgcgacagcctcggagagctacctgttgagctgcaaaaaaagttgaaggagatttga
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| Protein seq | MAELVPQVVGAVSRSIAGRLLADIDLASSVGTNVEDVTDALTRLTSIRADLEASMGRLPQRRRPEEVTDWLSRVDGAEKRVAKLRREYQRRCCSCGGGGAFSLNLFASYAISRRACHERHRLAALLGECDRVRSLAAGAPRPSSGAMVVPSTVVGMEGYLEEALACLDDRDAGVVAICGMAGVGKSTLLRRINNVFVQDPDRRHEFDYVIWLDAPGDCAAVGKMQDAMAHRLGLCALPDGGAPDHRARPIFEVLRDSSFLLLLDGVTKPVDLVDIGVPHLVHDDRRRQKVAMTTRTRGVCGRMSSSRRIDMQCLDSDHSWRLFREIARDETINADPRIPDLAKEVAGRCGGLPLVLTAIGGAMRCRRQPEEWVSTVTALRNLELAKIPGMDAGEKPGAMLRSLQESYGDLRHPVLQKCFLATSLWPEGHAIDKGELVECWIGLGLVGESLPMDEAVRTGLAVLNELEEANLLLPGDATGEVKLHGVVRGAALWIARDLGKAPNRWVVCTGGVSLRSRQKLVEFFERARDAERVSAMRSSVERLRAMPPPSSPCRSLSVLMLQHNAALRDIPGGFLLGVPALAYLDASFTGVREVAPEIGTLASLRYLNLSSTPLESVPPELGRLRQLRHLLLRHTARLSAFPAGVLRGLPSLDVLDVCPSRYTEWCGAGGGGGGASLDELRSSSAFVRSLGIAVATLAGLRALRGLDNVRTRRLTVTRVAATAPSVALRPSMLGLLEALHELTVAKCSGLQELEVVAGEEDNAWWRLPELRKLEIDELNELAAVRWTRTDVGAFLPALRWVKISHCNRLRNVSWAVQLPCLEQLELRHCSEMVHVVDIDGDDEEQRREHPETRTFRCLRRLLLVELPSMGSIGGGAALSFPWLETLEIAGCDSLGELPVELQKKLKEI |
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| Function | Disease resistance protein RPS2 [UniProtKB/Swiss-Prot:Q42484] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0007780 | OsLiXu_03g0007780.01 | Chr03 | 5664146 | 5666872 | + | NAM | ||
| CDS seq | atggcggagctggtgccgcaggtcgtcggcgccgtgagccgcagcatcgccggccgcctgctcgccgacatcgacctcgccagcagcgtcggcacgaacgtcgaggacgtcaccgacgcgctcacacggctgacgtcgatacgggccgacctcgaggcctccatggggaggctgccgcagcggcggcggccggaggaggtcacggactggctgtcgcgggtggacggcgccgagaagcgggtggccaagctccggcgagagtaccagcgccggtgttgctcctgcggcggcggcggcgccttctcgctcaacctgttcgcgagctacgccattagccggcgcgcgtgccacgagcgccaccgtctcgccgcgctgctcggggagtgcgacagggtgaggagcctcgccgccggggcgccccggccgtcgtccggcgccatggtcgtgccgtccacggtggtcggcatggagggctacctcgaggaggccctggcgtgcctcgacgaccgcgacgccggtgtcgtggccatctgcggcatggccggcgtcggcaagagcacgctgctgcgacgcatcaacaacgtgttcgtccaggaccccgacaggaggcacgagttcgactacgtcatatggctcgacgcgccgggcgactgcgccgccgtgggcaagatgcaggacgccatggctcaccggctcggcctgtgcgcgctcccggacggcggcgcgccggaccaccgtgcgcgtccgatctttgaagtcctcagggactcgagcttcttgctgctgctcgacggcgtaaccaagcctgtcgacttggtggacatcggcgtcccgcacctcgtgcacgacgatcgccggaggcagaaggtcgccatgaccacccgaacaaggggagtctgcggcaggatgagctcgtcgcgaaggattgacatgcaatgcttggacagtgaccattcatggcgtctgttcagagagatcgcccgcgacgagacgatcaacgccgacccgaggataccggacttggcgaaggaggtcgccgggaggtgcggcggcttgccgcttgtgctcaccgccatcggcggcgccatgaggtgcaggaggcagccagaggagtgggtgagcacggtgaccgcgctcaggaacttggagctcgccaagatccccgggatggacgccggcgagaagccaggcgccatgctgcgatcgctgcaagagagctacggcgacctgcgccatcccgtgctccagaagtgcttcctcgccacgtccctgtggcccgagggccacgccattgacaagggcgagctcgtcgagtgctggatcggcctcgggctggtgggcgagtcgctgccgatggacgaggccgtgcgcacggggctcgccgtcctcaacgagctcgaggaggccaacctgctgctgcccggcgacgccacgggcgaggtgaagctgcacggcgtcgtgaggggcgcggcgctgtggatcgcccgtgacctcggcaaggcgccgaacaggtgggtggtgtgcaccggcggcgtctccctccggtcgaggcagaagctagtggagttcttcgagcgcgcgcgcgacgcggagcgggtgtccgccatgcgcagctcggtcgagcggctgcgggcaatgccgccgccgtcgtccccgtgccggagcctctccgtcctcatgctgcagcacaacgcggcgctgcgtgacatccccggcggcttcctgctcggcgtgccggcgctcgcgtacctggacgcgtccttcaccggcgtccgcgaggtcgccccggagatcggcacgctcgcgtcgctgcgttacctgaacctgtcgtcgacgccgctggagtccgtgccgccggagctggggaggctgcggcagctcaggcacctgctgctgcggcacacggcgcgcctctcggcgttccccgccggcgtgctgcgtgggctgccgagcctggacgtcctcgacgtgtgcccgagcaggtacaccgagtggtgcggcgcgggaggaggaggaggaggagcgagcctggacgagctgaggtcgagctcggcgttcgtccggtccctcgggatcgccgtcgcgacgctcgccggcctacgcgcgctgcgcggcctcgacaacgtgcgcacacggcggctgaccgtgacgcgggtggcggcgaccgcgccgtccgtcgcgctgcgcccctccatgctgggcctgctcgaggccctgcacgagctcaccgtcgccaagtgctccggcctgcaggagctggaggttgtcgccggcgaggaggacaacgcatggtggcgccttccggagctcaggaagctcgagatcgatgagctgaacgagctggcggccgtgcggtggacgcggacggacgtcggggcgttcttgccggcgctccggtgggtgaagatctcacactgcaacaggctaaggaacgtgagctgggcggtgcagctgccatgcctggagcagctggagcttcgccattgctcggagatggttcacgtcgtagacattgacggcgacgacgaggagcagcgacgagagcacccggagacgcgcacgttccgctgcctcaggaggctgctgctggtggagcttccgtcgatgggcagcattggtggtggtgcagcgctgagcttcccttggttggagaccctggagatcgccggctgcgacagcctcggagagctacctgttgagctgcaaaaaaagttgaaggagatttga
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| Protein seq | MAELVPQVVGAVSRSIAGRLLADIDLASSVGTNVEDVTDALTRLTSIRADLEASMGRLPQRRRPEEVTDWLSRVDGAEKRVAKLRREYQRRCCSCGGGGAFSLNLFASYAISRRACHERHRLAALLGECDRVRSLAAGAPRPSSGAMVVPSTVVGMEGYLEEALACLDDRDAGVVAICGMAGVGKSTLLRRINNVFVQDPDRRHEFDYVIWLDAPGDCAAVGKMQDAMAHRLGLCALPDGGAPDHRARPIFEVLRDSSFLLLLDGVTKPVDLVDIGVPHLVHDDRRRQKVAMTTRTRGVCGRMSSSRRIDMQCLDSDHSWRLFREIARDETINADPRIPDLAKEVAGRCGGLPLVLTAIGGAMRCRRQPEEWVSTVTALRNLELAKIPGMDAGEKPGAMLRSLQESYGDLRHPVLQKCFLATSLWPEGHAIDKGELVECWIGLGLVGESLPMDEAVRTGLAVLNELEEANLLLPGDATGEVKLHGVVRGAALWIARDLGKAPNRWVVCTGGVSLRSRQKLVEFFERARDAERVSAMRSSVERLRAMPPPSSPCRSLSVLMLQHNAALRDIPGGFLLGVPALAYLDASFTGVREVAPEIGTLASLRYLNLSSTPLESVPPELGRLRQLRHLLLRHTARLSAFPAGVLRGLPSLDVLDVCPSRYTEWCGAGGGGGGASLDELRSSSAFVRSLGIAVATLAGLRALRGLDNVRTRRLTVTRVAATAPSVALRPSMLGLLEALHELTVAKCSGLQELEVVAGEEDNAWWRLPELRKLEIDELNELAAVRWTRTDVGAFLPALRWVKISHCNRLRNVSWAVQLPCLEQLELRHCSEMVHVVDIDGDDEEQRREHPETRTFRCLRRLLLVELPSMGSIGGGAALSFPWLETLEIAGCDSLGELPVELQKKLKEI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0254000 | SBH | 0.077482 | 0.0 | 2.632422 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g10910 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0254000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0007850 | RBH | 0.0 | 2.890023 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0007820 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0007900 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0007880 | RBH | 0.0 | 0.021630 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0007760 | RBH | 0.0 | 3.765247 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0094800 | RBH | 0.103906 | 1.48198 | 0.2886935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0007700 | RBH | 0.0 | 0.116858 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0095200 | RBH | 0.070033 | 1.7265845 | 0.6795095 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0007720 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0007780 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0007770 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0018560 | SBH | 2.710331 | 0.0 | 3.436944 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0007750 | RBH | 0.0 | 1.015307 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G007800 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0007610 | RBH | 0.0 | 0.0 | 0.467962 |
