Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0006100 | OGI:03011610 | 13/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:4307138-4308505 | ||||||||
| Gene Symbol | ERF64, OsERF#064, OsERF064, OsERF64, AP2/EREBP#029, AP2/EREBP29, OsBIERF4, BIERF4 | ||||||||||
| DNA seq | gttcaaaagattcatcaatcatgttgaaagaaccaaagaattcttgaacatattaatcctgtcttgatttcttgaacatcagacaacataaacatggtgattaactgaaactcagatttttgcatcaaaggcacagccaaaaagatcttttacgagaacgagaagcctcacataatttttcattaccgaaaggaaccaggacgaacacatgcttgcttggcaaaaccactcttctatgtacatgacatggtacaagatcgagtcacagggtcgccggagacgacggctagagcctagaaggacaagctggcctcgacgtcgacgaggcagcagccgtcgtcgaagctccagagccccatgccctggtcggcggcggcggcggcggcggtggtctgcacggcgtcggcgctgaacaggctgtccagggattcgtaggcgccgccgttgaagtagttgtactggtcggcgaacagcagcgcgtcgaacagcgcgtcggtgtcgtcgccggagccggagtcggtggtggtggtggtgtcctccggctcggtcctcggacgcttcttggcgaggtcgtcgtcgctgtcgagcgacagcgccgccgcggcgacggcgaactcgtcggaggccgacatgccctgccaggagaagtccgggagggcgttcgactcggagctctcgctggtctcgggctcgtacttgatggacgccatggcggcggcgacctcctcctcctcgtcctcctcctcgacgaggttgatgaccggggtcgccttgacggccggggcggcggcggcggtggcgcggccgcgcttgcgggtgtcaggggtggtagcggaagggaagttgagcttggccctgtccccgcggatggcgcgcgcggcgtcgtcgtaggcgagcgcggcggcctcggcgttggtgaaggtgccgagccagacgcggatgcccttgacggggtcgcggatctccgccgcccacttcccccacggccggcgccgcacgcccctgtactgcgccggcttcctgcgcctgctcgacgccgccgccgccgccgccttcctcgccttcttggcgcggaagacgaacggcttgtgctcggaggtcgcctcctcctcctccgcctcctccagcatcatctcctcgtcatcggagtcgttgtcgaagtcgcggaacgcggcctcgaagtcgtcggcgcgcgcgcccttcttcttggcattgttggcgtcgcccggccagacgtggcccgccgtgacgcgcctcgccgccggcgcgctcggtatgagctccgcaaggatcgctccgccgcacatctttggttgctgcttttcttttgcttttgggtgttgggctgtgaacttgtgagcttgtgat
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| CDS seq | atgtgcggcggagcgatccttgcggagctcataccgagcgcgccggcggcgaggcgcgtcacggcgggccacgtctggccgggcgacgccaacaatgccaagaagaagggcgcgcgcgccgacgacttcgaggccgcgttccgcgacttcgacaacgactccgatgacgaggagatgatgctggaggaggcggaggaggaggaggcgacctccgagcacaagccgttcgtcttccgcgccaagaaggcgaggaaggcggcggcggcggcggcgtcgagcaggcgcaggaagccggcgcagtacaggggcgtgcggcgccggccgtgggggaagtgggcggcggagatccgcgaccccgtcaagggcatccgcgtctggctcggcaccttcaccaacgccgaggccgccgcgctcgcctacgacgacgccgcgcgcgccatccgcggggacagggccaagctcaacttcccttccgctaccacccctgacacccgcaagcgcggccgcgccaccgccgccgccgccccggccgtcaaggcgaccccggtcatcaacctcgtcgaggaggaggacgaggaggaggaggtcgccgccgccatggcgtccatcaagtacgagcccgagaccagcgagagctccgagtcgaacgccctcccggacttctcctggcagggcatgtcggcctccgacgagttcgccgtcgccgcggcggcgctgtcgctcgacagcgacgacgacctcgccaagaagcgtccgaggaccgagccggaggacaccaccaccaccaccgactccggctccggcgacgacaccgacgcgctgttcgacgcgctgctgttcgccgaccagtacaactacttcaacggcggcgcctacgaatccctggacagcctgttcagcgccgacgccgtgcagaccaccgccgccgccgccgccgccgaccagggcatggggctctggagcttcgacgacggctgctgcctcgtcgacgtcgaggccagcttgtccttctag
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| Protein seq | MCGGAILAELIPSAPAARRVTAGHVWPGDANNAKKKGARADDFEAAFRDFDNDSDDEEMMLEEAEEEEATSEHKPFVFRAKKARKAAAAAASSRRRKPAQYRGVRRRPWGKWAAEIRDPVKGIRVWLGTFTNAEAAALAYDDAARAIRGDRAKLNFPSATTPDTRKRGRATAAAAPAVKATPVINLVEEEDEEEEVAAAMASIKYEPETSESSESNALPDFSWQGMSASDEFAVAAAALSLDSDDDLAKKRPRTEPEDTTTTTDSGSGDDTDALFDALLFADQYNYFNGGAYESLDSLFSADAVQTTAAAAAADQGMGLWSFDDGCCLVDVEASLSF |
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| Function | Ethylene-responsive transcription factor 1 [UniProtKB/Swiss-Prot:Q6K7E6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0006100 | OsLiXu_03g0006100.01 | Chr03 | 4307138 | 4308505 | - | NAM | ||
| CDS seq | atgtgcggcggagcgatccttgcggagctcataccgagcgcgccggcggcgaggcgcgtcacggcgggccacgtctggccgggcgacgccaacaatgccaagaagaagggcgcgcgcgccgacgacttcgaggccgcgttccgcgacttcgacaacgactccgatgacgaggagatgatgctggaggaggcggaggaggaggaggcgacctccgagcacaagccgttcgtcttccgcgccaagaaggcgaggaaggcggcggcggcggcggcgtcgagcaggcgcaggaagccggcgcagtacaggggcgtgcggcgccggccgtgggggaagtgggcggcggagatccgcgaccccgtcaagggcatccgcgtctggctcggcaccttcaccaacgccgaggccgccgcgctcgcctacgacgacgccgcgcgcgccatccgcggggacagggccaagctcaacttcccttccgctaccacccctgacacccgcaagcgcggccgcgccaccgccgccgccgccccggccgtcaaggcgaccccggtcatcaacctcgtcgaggaggaggacgaggaggaggaggtcgccgccgccatggcgtccatcaagtacgagcccgagaccagcgagagctccgagtcgaacgccctcccggacttctcctggcagggcatgtcggcctccgacgagttcgccgtcgccgcggcggcgctgtcgctcgacagcgacgacgacctcgccaagaagcgtccgaggaccgagccggaggacaccaccaccaccaccgactccggctccggcgacgacaccgacgcgctgttcgacgcgctgctgttcgccgaccagtacaactacttcaacggcggcgcctacgaatccctggacagcctgttcagcgccgacgccgtgcagaccaccgccgccgccgccgccgccgaccagggcatggggctctggagcttcgacgacggctgctgcctcgtcgacgtcgaggccagcttgtccttctag
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| Protein seq | MCGGAILAELIPSAPAARRVTAGHVWPGDANNAKKKGARADDFEAAFRDFDNDSDDEEMMLEEAEEEEATSEHKPFVFRAKKARKAAAAAASSRRRKPAQYRGVRRRPWGKWAAEIRDPVKGIRVWLGTFTNAEAAALAYDDAARAIRGDRAKLNFPSATTPDTRKRGRATAAAAPAVKATPVINLVEEEDEEEEVAAAMASIKYEPETSESSESNALPDFSWQGMSASDEFAVAAAALSLDSDDDLAKKRPRTEPEDTTTTTDSGSGDDTDALFDALLFADQYNYFNGGAYESLDSLFSADAVQTTAAAAAADQGMGLWSFDDGCCLVDVEASLSF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0006100 | OsLiXu_03g0006100.02 | Chr03 | 4307289 | 4308505 | - | IsoSeq | ||
| CDS seq | tcacaagctcacaagttcacagcccaacacccaaaagcaaaagaaaagcagcaaccaaagatgtgcggcggagcgatccttgcggagctcataccgagcgcgccgacgacttcgaggccgcgttccgcgacttcgacaacgactccgatgacgagg |
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| Protein seq | SQAHKFTAQHPKAKEKQQPKMCGGAILAELIPSAPTTSRPRSATSTTTPMTR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.301738 | 7.889274 | 10.362146 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0183300 | RBH | 7.275806 | 6.190809 | 17.933794 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g08500 | RBH | 4.458876 | 3.738807 | 4.088319 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0183300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0006180 | RBH | 6.524454 | 35.578789 | 25.343203 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0006150 | RBH | 0.468915 | 7.064628 | 9.061497 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0006160 | SBH | 4.045211 | 16.476395 | 6.816233 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0006150 | SBH | 1.519140 | 1.199917 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0006110 | RBH | 36.751347 | 27.314781 | 57.165188 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0071200 | RBH | 59.526449 | 338.544861 | 503.8438725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0006010 | RBH | 3.071270 | 5.815117 | 6.196614 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0071500 | RBH | 70.7220595 | 231.1252825 | 47.678982 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0006070 | RBH | 1.110711 | 0.222056 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0006090 | RBH | 2.396036 | 13.089298 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0006080 | RBH | 23.241993 | 20.709852 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0023320 | SBH | 0.140778 | 5.239248 | 0.292077 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0006090 | RBH | 2.301962 | 41.512516 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G006120 | RBH | 2.527776 | 6.437413 | 5.895926 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0005940 | RBH | 14.863561 | 135.469406 | 31.578142 |
