Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0005180 | OGI:03009930 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:3725743-3727655 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gacagttcaaatctctgaaccgatggagcgcagccagactccgcgatgacgccgccgtcgccgtcgatctcgccaggtgatctcgtatccttcgccggcaagtgctcgacgaagcgcaagctccgcctcctccacggcgccctcctccgccgccgccacctcctcccggccgccgacgccgtcgcggcactcgccaagctcctccgcttcgccgccgtctcccccgccggcgacctccgccatgccgccgcgttgctctccctccacctcccgttcctctcctcggcctcctcccacctcgccttcttctacaacaccctcatgcgcggcctcgccgcgtcctcctcgcccgccgccgccatcgagctcttcgccgcgatgcgccgcgcgggcgccgcccccgacgccttcaccttcacgttcgccctcaagtcttgctcgcgatgcgtgtctcagcggcggttgccttccgacctccacgcccaggcgatcaaacacggctgccttggcgcgggcagctctcacgtgcatgtccacaacgcgctgctccatggctactcgtctcgggctgctgttggggacgcacgcagggtgttcgacgaaatgcctgctcgggatgtgatctccttctcagggctgctgactcttcacctcaaggccaacgatttggatgccgcacgcgtggtgtttgatcagatgcctcaccgggatgttgtttcttggactgccatgatatccgcgtatgccagggcacgacgtccgcgggaggccttggcattgtttgatgcaatgccggtgcagccagatgaagtgaccatgctgagcgttgtgtcagcatgcactgcactaggggaccttgcaactggggagcgtgtgtgtcagtatgttgattccaatggcttcgggtggatggtgtcactccgtaatgcactcatggacatgtatgccaagtgtgggagcctcactgaagcacgcaatttgtttgatggcatgaccgtgaggagcttggcatcttggaatacatttatctcggcatatgcatcgcatggtgatgtggagagcacagttgctttgtttcatcggatgctggctgatggcaaatctgtgaagcctgatgggacgacactgcttgcagttctcaccgcatatgcacacaagggctttgttgaggaggggcgtgccatgttcaatgcaatcttgagtggcaactatggtaaagtggacctcaccattgagcactatggatgcatggtggatttgcttggtcgggctgggcaacttgaggaagcatacaaaatgatagaacaaatgccaattccaagcaatagtgtggtctggggtgctttgcttggtgcatgccggacacatggggatatcaacatggcagagcgggcggtccagaagctaaggagcctgaacccggaggagggtgggtactacattttgctcagcgacatgtacgctgcttctggacgaacaacagaggccatggagatcagacggatcatgaatcaggccggggcccaaaaaactgcaggccagagcagctggagcacaccctgtctgcctcagccgtaatttttcctaggctgcatttcacctgcttttgccctttggatcactagcataatcaggtattgtctcttactgcaggccccctgtttgatgaactgtgaaagtgtgaatcctgaatctgaactgtacaggtgctgtatgctaatgtgctatacttgctatcctacaaaagtgggccagaaacgcaacaatcattgtggagggaattgttttttgaacaaattttggaggggaaagatttcatcatggctctttaagaattcagctccccatgtatgctatcaacttatcctttcaaagttcatatggcaaatttgagtcagtgggtatttatttgc
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| CDS seq | atgacgccgccgtcgccgtcgatctcgccaggtgatctcgtatccttcgccggcaagtgctcgacgaagcgcaagctccgcctcctccacggcgccctcctccgccgccgccacctcctcccggccgccgacgccgtcgcggcactcgccaagctcctccgcttcgccgccgtctcccccgccggcgacctccgccatgccgccgcgttgctctccctccacctcccgttcctctcctcggcctcctcccacctcgccttcttctacaacaccctcatgcgcggcctcgccgcgtcctcctcgcccgccgccgccatcgagctcttcgccgcgatgcgccgcgcgggcgccgcccccgacgccttcaccttcacgttcgccctcaagtcttgctcgcgatgcgtgtctcagcggcggttgccttccgacctccacgcccaggcgatcaaacacggctgccttggcgcgggcagctctcacgtgcatgtccacaacgcgctgctccatggctactcgtctcgggctgctgttggggacgcacgcagggtgttcgacgaaatgcctgctcgggatgtgatctccttctcagggctgctgactcttcacctcaaggccaacgatttggatgccgcacgcgtggtgtttgatcagatgcctcaccgggatgttgtttcttggactgccatgatatccgcgtatgccagggcacgacgtccgcgggaggccttggcattgtttgatgcaatgccggtgcagccagatgaagtgaccatgctgagcgttgtgtcagcatgcactgcactaggggaccttgcaactggggagcgtgtgtgtcagtatgttgattccaatggcttcgggtggatggtgtcactccgtaatgcactcatggacatgtatgccaagtgtgggagcctcactgaagcacgcaatttgtttgatggcatgaccgtgaggagcttggcatcttggaatacatttatctcggcatatgcatcgcatggtgatgtggagagcacagttgctttgtttcatcggatgctggctgatggcaaatctgtgaagcctgatgggacgacactgcttgcagttctcaccgcatatgcacacaagggctttgttgaggaggggcgtgccatgttcaatgcaatcttgagtggcaactatggtaaagtggacctcaccattgagcactatggatgcatggtggatttgcttggtcgggctgggcaacttgaggaagcatacaaaatgatagaacaaatgccaattccaagcaatagtgtggtctggggtgctttgcttggtgcatgccggacacatggggatatcaacatggcagagcgggcggtccagaagctaaggagcctgaacccggaggagggtgggtactacattttgctcagcgacatgtacgctgcttctggacgaacaacagaggccatggagatcagacggatcatgaatcaggccggggcccaaaaaactgcaggccagagcagctggagcacaccctgtctgcctcagccgtaa
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| Protein seq | MTPPSPSISPGDLVSFAGKCSTKRKLRLLHGALLRRRHLLPAADAVAALAKLLRFAAVSPAGDLRHAAALLSLHLPFLSSASSHLAFFYNTLMRGLAASSSPAAAIELFAAMRRAGAAPDAFTFTFALKSCSRCVSQRRLPSDLHAQAIKHGCLGAGSSHVHVHNALLHGYSSRAAVGDARRVFDEMPARDVISFSGLLTLHLKANDLDAARVVFDQMPHRDVVSWTAMISAYARARRPREALALFDAMPVQPDEVTMLSVVSACTALGDLATGERVCQYVDSNGFGWMVSLRNALMDMYAKCGSLTEARNLFDGMTVRSLASWNTFISAYASHGDVESTVALFHRMLADGKSVKPDGTTLLAVLTAYAHKGFVEEGRAMFNAILSGNYGKVDLTIEHYGCMVDLLGRAGQLEEAYKMIEQMPIPSNSVVWGALLGACRTHGDINMAERAVQKLRSLNPEEGGYYILLSDMYAASGRTTEAMEIRRIMNQAGAQKTAGQSSWSTPCLPQP |
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| Function | Pentatricopeptide repeat-containing protein At5g56310 [UniProtKB/Swiss-Prot:Q9FMA1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0005180 | OsLiXu_03g0005180.01 | Chr03 | 3725743 | 3727655 | + | NAM | ||
| CDS seq | atgacgccgccgtcgccgtcgatctcgccaggtgatctcgtatccttcgccggcaagtgctcgacgaagcgcaagctccgcctcctccacggcgccctcctccgccgccgccacctcctcccggccgccgacgccgtcgcggcactcgccaagctcctccgcttcgccgccgtctcccccgccggcgacctccgccatgccgccgcgttgctctccctccacctcccgttcctctcctcggcctcctcccacctcgccttcttctacaacaccctcatgcgcggcctcgccgcgtcctcctcgcccgccgccgccatcgagctcttcgccgcgatgcgccgcgcgggcgccgcccccgacgccttcaccttcacgttcgccctcaagtcttgctcgcgatgcgtgtctcagcggcggttgccttccgacctccacgcccaggcgatcaaacacggctgccttggcgcgggcagctctcacgtgcatgtccacaacgcgctgctccatggctactcgtctcgggctgctgttggggacgcacgcagggtgttcgacgaaatgcctgctcgggatgtgatctccttctcagggctgctgactcttcacctcaaggccaacgatttggatgccgcacgcgtggtgtttgatcagatgcctcaccgggatgttgtttcttggactgccatgatatccgcgtatgccagggcacgacgtccgcgggaggccttggcattgtttgatgcaatgccggtgcagccagatgaagtgaccatgctgagcgttgtgtcagcatgcactgcactaggggaccttgcaactggggagcgtgtgtgtcagtatgttgattccaatggcttcgggtggatggtgtcactccgtaatgcactcatggacatgtatgccaagtgtgggagcctcactgaagcacgcaatttgtttgatggcatgaccgtgaggagcttggcatcttggaatacatttatctcggcatatgcatcgcatggtgatgtggagagcacagttgctttgtttcatcggatgctggctgatggcaaatctgtgaagcctgatgggacgacactgcttgcagttctcaccgcatatgcacacaagggctttgttgaggaggggcgtgccatgttcaatgcaatcttgagtggcaactatggtaaagtggacctcaccattgagcactatggatgcatggtggatttgcttggtcgggctgggcaacttgaggaagcatacaaaatgatagaacaaatgccaattccaagcaatagtgtggtctggggtgctttgcttggtgcatgccggacacatggggatatcaacatggcagagcgggcggtccagaagctaaggagcctgaacccggaggagggtgggtactacattttgctcagcgacatgtacgctgcttctggacgaacaacagaggccatggagatcagacggatcatgaatcaggccggggcccaaaaaactgcaggccagagcagctggagcacaccctgtctgcctcagccgtaa
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| Protein seq | MTPPSPSISPGDLVSFAGKCSTKRKLRLLHGALLRRRHLLPAADAVAALAKLLRFAAVSPAGDLRHAAALLSLHLPFLSSASSHLAFFYNTLMRGLAASSSPAAAIELFAAMRRAGAAPDAFTFTFALKSCSRCVSQRRLPSDLHAQAIKHGCLGAGSSHVHVHNALLHGYSSRAAVGDARRVFDEMPARDVISFSGLLTLHLKANDLDAARVVFDQMPHRDVVSWTAMISAYARARRPREALALFDAMPVQPDEVTMLSVVSACTALGDLATGERVCQYVDSNGFGWMVSLRNALMDMYAKCGSLTEARNLFDGMTVRSLASWNTFISAYASHGDVESTVALFHRMLADGKSVKPDGTTLLAVLTAYAHKGFVEEGRAMFNAILSGNYGKVDLTIEHYGCMVDLLGRAGQLEEAYKMIEQMPIPSNSVVWGALLGACRTHGDINMAERAVQKLRSLNPEEGGYYILLSDMYAASGRTTEAMEIRRIMNQAGAQKTAGQSSWSTPCLPQP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.096035 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0169300 | RBH | 0.0 | 0.0 | 0.311927 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g07330 | RBH | 0.0 | 0.0 | 0.080296 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0169300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0005270 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0005200 | RBH | 0.0 | 0.555073 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0005240 | RBH | 0.0 | 0.0 | 0.626884 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0005180 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0005200 | RBH | 0.0 | 0.603686 | 0.591090 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0059600 | RBH | 0.401799 | 0.6960635 | 0.20527 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0005090 | RBH | 0.013566 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0059800 | RBH | 0.404487 | 0.74566 | 1.8841825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0005180 | RBH | 0.043306 | 0.063517 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0005180 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0005140 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0005160 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G005170 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0005010 | RBH | 0.0 | 0.0 | 0.0 |
