Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0001730 | OGI:03003080 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:1144849-1147086 | ||||||||
| Gene Symbol | HIPP39, OsHMP17, HMP17, OsHIPP39, OsaHIP39, HIP39 | ||||||||||
| DNA seq | agaaacaaaaaaaaatactacttttaaaaaacgatattcgatcaattggctttgtttcgggcccattgacaatttgcagatcgacagagagtacgtacgtacacagagcctggctttccattgtgtaacccgtaaagggcgccactactcattcgatattgccacactgactgactgactttagcatctgctactactactactccatggacacacagcacactacctgacctgtcaccacggcgccgagcacaagagagaacacacaatgatgatcacacacactcgatcgatctcactgctactagtagtagtagtagtacgcgtgcaatgcgaggcgggcatgggaatttttttacatgatggagcaggcgttgacgtcgtcgtcgttgaagaggttgctgacggggtcggcgccgcggtggggctccgggaggtggccgtgcttgtcgccgttgtagccgtggcggtagtagttgtagctggggcggaaggactcctcgtcgtggaagtagtccttggccgacgtgaagtagagcggcaggtctgggtttggccagaactccgccttcttccccgcccgcctcacctccttcagcacccgctgcctctccacgtaccccgtcaccgtcaccttctccatctccaactccacctccaccgaatcaacccctacatgcatgcaaatttcaccaaattaggccatgtttagttgctccaaaatgacaaaagttatactgttttggagcactttttatcaatatgaatcgaagccctagtagtaaaaattggcaatttaatatttgtcatctggaagtctagagtagcaaattttatcaaaaaaagcacgttgggagccgtgctctctctctttgctagtaaaatgacaaaactttaccatgcatctatgcatcaattagtaaaacttcaatgccaaattttttgccgccaaaacttttgccaaaaaaatttgtcacaacaaattgatctaaacccttagttgccaagattcaaaaactttttatgataattgagatttgcaaactatacctctgagcttcatgagagcatgcttcacgaccctctcgcagcctgagcagcacatccgaaccttgagctccactgtctgggggaaaacagaggagacaaccgttcatattttactgtatgtactcgcatgcagcaattcaatcaatcgcacgcatgaatgatacatacacctactgtagtattttgctactggtacgagtacatttttactgtctccaacaccggcgcatgcggcaagccgagggaaaagtttcccttgtcctatgtaagttgccctttttttttccttcaaccttttgtcgctctctttttcgcacgcatgcatgagcttggtttcgcgggctgttctagacagcaacgtgcacagcagcacagattatcgctacgagcatatgctaggaaattaattagcgttaagctaggagacagcatcagaagtggcggacaaaaatctgaggagaataatctgaacacgactagtcgcaatcgcaatatcgcataaacaagctagcttgcaaatacgtattcatctgaacaaagaatatgtccgtcttctgcatgcgtagcatagctaaacagaggaagcgaggaacagagcaagcaaagcaagaacgaacgagcaagctgaagaagaacaaatacctgcagtgacagtggcctgctcctgcccatcctgcgtccggcgaggccaccctcgtagtagtaggtgttggtgctcgtcgggtggctgctgtagtagtacgcgccggcgcggtggccgtgccggtggccgccggtgggggagaagcagcagtagaggaacgacgacagcgcggaggagacggtcgacatggccggcagctcaccgccgcaccaaattataccaccggaaaagagacagtggagtgcacggcaagctcgagcaaagcttaagctaagctaagctgagctgagctaacctctcgctgcaggttaacctgaatcttagccaagagggttaatcttctgcttgctgcttcagctgtaactgcaaggagaacaaaacaaaaatgctcaaagtgttttcttgcttctgctactacttctgcttttattctcctcgatcactgctactgccttgctcgatggtgcaatggttttatacttttttataggcttttttttgggcgaggaagaggagaagagggtgttgcagtggcagtgtagtgt
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| CDS seq | atgtcgaccgtctcctccgcgctgtcgtcgttcctctactgctgcttctcccccaccggcggccaccggcacggccaccgcgccggcgcgtactactacagcagccacccgacgagcaccaacacctactactacgagggtggcctcgccggacgcaggatgggcaggagcaggccactgtcactgcagacagtggagctcaaggttcggatgtgctgctcaggctgcgagagggtcgtgacggtgacggggtacgtggagaggcagcgggtgctgaaggaggtgaggcgggcggggaagaaggcggagttctggccaaacccagacctgccgctctacttcacgtcggccaaggactacttccacgacgaggagtccttccgccccagctacaactactaccgccacggctacaacggcgacaagcacggccacctcccggagccccaccgcggcgccgaccccgtcagcaacctcttcaacgacgacgacgtcaacgcctgctccatcatgtaa
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| Protein seq | MSTVSSALSSFLYCCFSPTGGHRHGHRAGAYYYSSHPTSTNTYYYEGGLAGRRMGRSRPLSLQTVELKVRMCCSGCERVVTVTGYVERQRVLKEVRRAGKKAEFWPNPDLPLYFTSAKDYFHDEESFRPSYNYYRHGYNGDKHGHLPEPHRGADPVSNLFNDDDVNACSIM |
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| Function | Heavy metal-associated isoprenylated plant protein 30 [UniProtKB/Swiss-Prot:F4IQG4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0001730 | OsLiXu_03g0001730.01 | Chr03 | 1144849 | 1147079 | - | NAM | ||
| CDS seq | atgtcgaccgtctcctccgcgctgtcgtcgttcctctactgctgcttctcccccaccggcggccaccggcacggccaccgcgccggcgcgtactactacagcagccacccgacgagcaccaacacctactactacgagggtggcctcgccggacgcaggatgggcaggagcaggccactgtcactgcagacagtggagctcaaggttcggatgtgctgctcaggctgcgagagggtcgtgacggtgacggggtacgtggagaggcagcgggtgctgaaggaggtgaggcgggcggggaagaaggcggagttctggccaaacccagacctgccgctctacttcacgtcggccaaggactacttccacgacgaggagtccttccgccccagctacaactactaccgccacggctacaacggcgacaagcacggccacctcccggagccccaccgcggcgccgaccccgtcagcaacctcttcaacgacgacgacgtcaacgcctgctccatcatgtaa
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| Protein seq | MSTVSSALSSFLYCCFSPTGGHRHGHRAGAYYYSSHPTSTNTYYYEGGLAGRRMGRSRPLSLQTVELKVRMCCSGCERVVTVTGYVERQRVLKEVRRAGKKAEFWPNPDLPLYFTSAKDYFHDEESFRPSYNYYRHGYNGDKHGHLPEPHRGADPVSNLFNDDDVNACSIM |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0001730 | OsLiXu_03g0001730.02 | Chr03 | 1144949 | 1147086 | - | IsoSeq | ||
| CDS seq | acactacactgccactgcaacaccctcttctcctcttcctcgcccaaaaaaaagcctataaaaaagtataaaaccattgcaccatcgagcaaggcagtagcagtgatcgaggagaataaaagcagaagtagtagcagaagcaagaaaaca |
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| Protein seq | TLHCHCNTLFSSSSPKKKPIKKYKTIAPSSKAVAVIEENKSRSSSRSKKT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.897078 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0120400 | RBH | 1.067564 | 0.197686 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g02860 | RBH | 0.760422 | 0.128910 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0120400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0001670 | RBH | 0.126729 | 60.704472 | 4.046903 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0001660 | RBH | 0.0 | 8.006157 | 1.188777 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0001680 | RBH | 1.091996 | 57.602623 | 3.827216 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0001670 | RBH | 0.262827 | 0.543356 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0001710 | RBH | 2.883090 | 8.251883 | 2.317004 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0018400 | RBH | 5.7401825 | 18.5317745 | 2.024709 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0001660 | RBH | 0.557899 | 2.122904 | 0.105548 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0018100 | RBH | 5.355882 | 15.6833845 | 5.561533 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0001730 | RBH | 0.0 | 0.095585 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0001750 | RBH | 0.000000 | 6.169199 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0001700 | RBH | 0.0 | 15.154528 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0018140 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0001740 | RBH | 0.290089 | 22.645697 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G001740 | RBH | 0.248666 | 2.116004 | 0.835808 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0001580 | RBH | 2.616579 | 32.502151 | 1.237059 |
