Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0036940 | OGI:02095790 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:35745181-35746473 | ||||||||
| Gene Symbol | MSL32, OsMSL32 | ||||||||||
| DNA seq | atggagcctttcaaaggaaacttctcaaacctcctcaaccaaggttcctcaagccaagcaacaaatagtgatgcccaaaactccccttctacccaatttcccacaagttatccccaaaacttcagacctagttttctccaaaatttccatccttttggtcctccaagcaactaccagccatatcgacaccctccaatctttcaaggtgctcagcaacaagattattatgggcaacctactccaggaagcttggaaggttttcaacttcaagaaaatctggtgcactcatctaaccaagcatttggatttgcagccagtagatcacagtttggtatgcaatatagtacttcaattggggctgcagccaacacttcttctcatggatcagcttctccatgtcatacaagacataatgagaaagaagtagttgaggttgaagaggcaagtgatagcagtgaagaaggaagaagagggacacgcatcaattggactgaagatgacaatatacgactaatgagttcttggttgaacaattcagttgatcccatcaaaggcaatgacaagaaatcagaacaatattggaaggctgtagctagagagttcaacagcaatatgcctagcaatgggaacaaaaggaaccccaagcaatgcagaacacattgggacaatgtcaagagagatgtcactaagttctgtggattttattctaaagctagaactactttcacaagtgggtattctgatgatatgataatggagaaagcccgtgaatggtacaaaaagcataacaaccaaaaacctttcaccttggagtatatgtggaaagatcttaaagatcaacctaaatggcgtagagtccttgaagagagtagccataataagaggaacaagatttctgaatcaggagcatatacttcatcgtcgaaccaagacacagaggaggaaacagagcgcaaagagaagcgccctgaggggcagaaagcagcaaaacagaggcaaaaaggaaaaggtgcaccatcacctttaggggataagccaaatcaaaatatggttctctttcatgaagctattacaactaaagcagcagcattgctaaaggcagcagaagcaacactgattggagcagaagcaaaaaaagagaaggcaattgcaaaaaaagagaaggcaagggcagaaaaataccaaatgtatttaaaactgatggagaaggatacatcaaccttcagtgaagcaaaactgaagagacatgaaaatgtgttggaccaattagctagagaacttgctaaggaataa
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| CDS seq | atggagcctttcaaaggaaacttctcaaacctcctcaaccaaggttcctcaagccaagcaacaaatagtgatgcccaaaactccccttctacccaatttcccacaagttatccccaaaacttcagacctagttttctccaaaatttccatccttttggtcctccaagcaactaccagccatatcgacaccctccaatctttcaaggtgctcagcaacaagattattatgggcaacctactccaggaagcttggaaggttttcaacttcaagaaaatctggtgcactcatctaaccaagcatttggatttgcagccagtagatcacagtttggtatgcaatatagtacttcaattggggctgcagccaacacttcttctcatggatcagcttctccatgtcatacaagacataatgagaaagaagtagttgaggttgaagaggcaaagcgcaaagagaagcgccctgaggggcagaaagcagcaaaacagaggcaaaaaggaaaaggtgcaccatcacctttaggggataagccaaatcaaaatatggttctctttcatgaagctattacaactaaagcagcagcattgctaaaggcagcagaagcaacactgattggagcagaagcaaaaaaagagaaggcaattgcaaaaaaagagaaggcaagggcagaaaaataccaaatgtatttaaaactgatggagaaggatacatcaaccttcagtgaagcaaaactgaagagacatgaaaatgtgttggaccaattagctagagaacttgctaaggaataa
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| Protein seq | MEPFKGNFSNLLNQGSSSQATNSDAQNSPSTQFPTSYPQNFRPSFLQNFHPFGPPSNYQPYRHPPIFQGAQQQDYYGQPTPGSLEGFQLQENLVHSSNQAFGFAASRSQFGMQYSTSIGAAANTSSHGSASPCHTRHNEKEVVEVEEAKRKEKRPEGQKAAKQRQKGKGAPSPLGDKPNQNMVLFHEAITTKAAALLKAAEATLIGAEAKKEKAIAKKEKARAEKYQMYLKLMEKDTSTFSEAKLKRHENVLDQLARELAKE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0036940 | OsLiXu_02g0036940.01 | Chr02 | 35745181 | 35746473 | + | NAM | ||
| CDS seq | atggagcctttcaaaggaaacttctcaaacctcctcaaccaaggttcctcaagccaagcaacaaatagtgatgcccaaaactccccttctacccaatttcccacaagttatccccaaaacttcagacctagttttctccaaaatttccatccttttggtcctccaagcaactaccagccatatcgacaccctccaatctttcaaggtgctcagcaacaagattattatgggcaacctactccaggaagcttggaaggttttcaacttcaagaaaatctggtgcactcatctaaccaagcatttggatttgcagccagtagatcacagtttggtatgcaatatagtacttcaattggggctgcagccaacacttcttctcatggatcagcttctccatgtcatacaagacataatgagaaagaagtagttgaggttgaagaggcaaagcgcaaagagaagcgccctgaggggcagaaagcagcaaaacagaggcaaaaaggaaaaggtgcaccatcacctttaggggataagccaaatcaaaatatggttctctttcatgaagctattacaactaaagcagcagcattgctaaaggcagcagaagcaacactgattggagcagaagcaaaaaaagagaaggcaattgcaaaaaaagagaaggcaagggcagaaaaataccaaatgtatttaaaactgatggagaaggatacatcaaccttcagtgaagcaaaactgaagagacatgaaaatgtgttggaccaattagctagagaacttgctaaggaataa
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| Protein seq | MEPFKGNFSNLLNQGSSSQATNSDAQNSPSTQFPTSYPQNFRPSFLQNFHPFGPPSNYQPYRHPPIFQGAQQQDYYGQPTPGSLEGFQLQENLVHSSNQAFGFAASRSQFGMQYSTSIGAAANTSSHGSASPCHTRHNEKEVVEVEEAKRKEKRPEGQKAAKQRQKGKGAPSPLGDKPNQNMVLFHEAITTKAAALLKAAEATLIGAEAKKEKAIAKKEKARAEKYQMYLKLMEKDTSTFSEAKLKRHENVLDQLARELAKE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g26740 | SBH | 0.128127 | 0.487808 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0012400 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0012570 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0012420 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0012240 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0017310 | SBH | 0.0 | 4.252145 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0556600 | RBH | 0.002641 | 0.030961 | 0.0085305 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0036640 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0587000 | RBH | 3.706924 | 3.5073945 | 18.353083 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0017620 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0036720 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0003070 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0017540 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0009950 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G010110 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0016350 | SBH | 0.000000 | 0.000000 | 0.000000 |
