Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0029470 | OGI:02079950 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:30033018-30036098 | ||||||||
| Gene Symbol | OsbHLH049 | ||||||||||
| DNA seq | aaaaccacccaaaagcgtagcgacacacgagaagccaccagccaacgtagtacgcgccgagagctgaggccatccacgacacacgaccatgagcacactagtagacgcgctgtgcgctccctgcagcgacaccgcgctcatctacgacaccttcaacgcctccgccgccgcgagcttcctcttcgacaatgccgccgccttctgcgacgctgacatcctcggcgccacggcgacaggggagaaggaggcgacgtcgtcggccgcggccgcggccgcggacgccgccccgccgaggaagaagcggcggcggcgcgcgaagagctgcaagtcgcgggaggagacggagacccagcggatgacgcacatcgccgtggagcgcaaCCGCCGGCGCCAGATGAACGAGTACCTCGCCATCCTCCGGTCGCTCATGCCGGAGCCCTACGTCCAGAGGGTACGTCGTactacgcgcgccggcacacgtctctctcgccctctctgttttggttttttttagcaaaccgacatcgcttcgtgtcaagtgtttctaccctcttttgttctgtatatctgcgttgctcccatttgtcaaagagcaagaaagcgatgtcggagcaaccggcgaggagaacggcgatgagagaatgtttggccgaaagagactcccccgccatggcgccattgtccgccattactcatggcgtatcgtctctttactgctcaatctcttttcatgaacagaagcatccattctttgcacagaaaccttctgcccattaatgtgtctcccctatcattaattcactcgtacacagagagagttgcctggatgggcctgtcatgtcaaatttaatgcgttcttgatcaTttttaaatgttgtgtagggcgaccaggcgtccattgtgggaggcgcaatcgagttcgtgaaggagctcgagcagcagctgcagtcgcttgaggcgcagaagcgaacgctgctccctcaccacaaggcgagatgcgacgacgcaacgccgatgcataacgccagcggcagcaacgtcggggccggcggctgcatggagcccacgacgacaacgagcaactgcagcagcagcgtcaccgaggacgcgccgtccgccgacgcgcccccgttcgcgcagttcttcgcgtacccgcagtacgtgtggtgccactcgccgcgcgactccaccaccaccaccaccgcggcgtctgcgtcggcgtcggcttcggcgtcgtcgtcgtcgccggccacggtggcggcggcgctccagtccgagcaccgctccgggttggccgacatcgaggtgagcctggtcgagacgcacgccagcgtccgtgtcatgtcaccgcggcggccagggcagctgctcaagatgatcgccggcctgcaggccctccggctcaccgtgctgcacctcaacgtcaccacgctggactcccttgtgctctacaccctcagcgtcaaggtacgcctacgcctatcgcctgcgtctgcagccgtgcactgatttcagttcttttttcaacaaaagtgcctcaattttcggccactgcatttcacacgcatttcgcgctgaaacgcgcaccgatgcagtagctagccaggcgctcaaaccgagcgataccaccagcacaaacgtttgtgcgtgtctccatgcatggtttgggaatcatgaggtcacttcaaccgagttaattaatcggagtaatctgggacgattattagagacggtgtttgattggtatagcgtctgaaaagaaaacgtgtcagatattctcctgcctgcactgcacagcacaggcataggtcatcgcatcaaggacgcagttgtgcaggcccccaaacagtataatgaacagaaacaagagatgagcagagatggagatcgcttcacccatcggctttcgatcaagcatcattgttcgagacgcatcaaaatttctcagaatttgatcgaatccgatggacctgactaggagcctgagtgcctggccacctgagtcctttcctgcttccccttctcgcttgttgttcgcttttgaccggatactccgtaggagtatttcagtaggagtaggcaggtcgggcccctgcagccaaaggacttgtcaagtccaaacggtgagtagcgcacagtactactagtggtctggtagtcctatggggtgtttgggagagaggggctgtgcgtagtgtgacgcttcacgaaaaagctactgcatcagtcagtccagattgtgtaagaaaaacgctgccacggagaatcctttctgctgagctgagccatgctatagatttcgactggcatagagaactgagcagaaaaggctatagctacagtaggcacaagtatagcgctggtgttcagccatgatagtgtgtgacagttccccgatggaatctgtgtgcgagtagtgctaatctacggcattttttttgcgactagtggcagattccttcgctccctaaccggccattgcacatgcacgcaatctcattagttctcgtctaatcctaatcttgtctttgcgtggccgtgtgctgcacaggtggaggaaggatgcagcctgacgacggtggacgacatcgcggcggcggtgcaccacgtgctctgcatcgtcgacgcggaggcggccgcctcggagcatctcctcgcggcggggcaactggccacgacggcgacggcggtggcgaagagagaactcgcgacgtacatgtactgagccgctccaagtgccttacatgtcgtcgtttgtgtggtcgcgtgtactgtatgccgcgctcccgtttttctcccctttttaggctcgtcacgtttttgctgtgtagtggcccggcaggttagatctagttctagttgtactagtagatgcaaaatgctatgtgttcagtagtcccagcctctcgacgagggcgtacttgtctgtttctcgttctgaaaacagaatgttgtattgctgtacctgtacagtatcctgcctcgcctttctgtaataagagcgactagcgagtagcgacattggaaggaacagttcgagattcgtattatccgaaccgggccttatgagggtactagctt
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| CDS seq | atgagcacactagtagacgcgctgtgcgctccctgcagcgacaccgcgctcatctacgacaccttcaacgcctccgccgccgcgagcttcctcttcgacaatgccgccgccttctgcgacgctgacatcctcggcgccacggcgacaggggagaaggaggcgacgtcgtcggccgcggccgcggccgcggacgccgccccgccgaggaagaagcggcggcggcgcgcgaagagctgcaagtcgcgggaggagacggagacccagcggatgacgcacatcgccgtggagcgcaaCCGCCGGCGCCAGATGAACGAGTACCTCGCCATCCTCCGGTCGCTCATGCCGGAGCCCTACGTCCAGAGGggcgaccaggcgtccattgtgggaggcgcaatcgagttcgtgaaggagctcgagcagcagctgcagtcgcttgaggcgcagaagcgaacgctgctccctcaccacaaggcgagatgcgacgacgcaacgccgatgcataacgccagcggcagcaacgtcggggccggcggctgcatggagcccacgacgacaacgagcaactgcagcagcagcgtcaccgaggacgcgccgtccgccgacgcgcccccgttcgcgcagttcttcgcgtacccgcagtacgtgtggtgccactcgccgcgcgactccaccaccaccaccaccgcggcgtctgcgtcggcgtcggcttcggcgtcgtcgtcgtcgccggccacggtggcggcggcgctccagtccgagcaccgctccgggttggccgacatcgaggtgagcctggtcgagacgcacgccagcgtccgtgtcatgtcaccgcggcggccagggcagctgctcaagatgatcgccggcctgcaggccctccggctcaccgtgctgcacctcaacgtcaccacgctggactcccttgtgctctacaccctcagcgtcaaggtggaggaaggatgcagcctgacgacggtggacgacatcgcggcggcggtgcaccacgtgctctgcatcgtcgacgcggaggcggccgcctcggagcatctcctcgcggcggggcaactggccacgacggcgacggcggtggcgaagagagaactcgcgacgtacatgtactga
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| Protein seq | MSTLVDALCAPCSDTALIYDTFNASAAASFLFDNAAAFCDADILGATATGEKEATSSAAAAAADAAPPRKKRRRRAKSCKSREETETQRMTHIAVERNRRRQMNEYLAILRSLMPEPYVQRGDQASIVGGAIEFVKELEQQLQSLEAQKRTLLPHHKARCDDATPMHNASGSNVGAGGCMEPTTTTSNCSSSVTEDAPSADAPPFAQFFAYPQYVWCHSPRDSTTTTTAASASASASASSSSPATVAAALQSEHRSGLADIEVSLVETHASVRVMSPRRPGQLLKMIAGLQALRLTVLHLNVTTLDSLVLYTLSVKVEEGCSLTTVDDIAAAVHHVLCIVDAEAAASEHLLAAGQLATTATAVAKRELATYMY |
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| Function | Transcription factor bHLH96 [UniProtKB/Swiss-Prot:Q9C7T4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0029470 | OsLiXu_02g0029470.01 | Chr02 | 30033018 | 30036098 | + | NAM | ||
| CDS seq | atgagcacactagtagacgcgctgtgcgctccctgcagcgacaccgcgctcatctacgacaccttcaacgcctccgccgccgcgagcttcctcttcgacaatgccgccgccttctgcgacgctgacatcctcggcgccacggcgacaggggagaaggaggcgacgtcgtcggccgcggccgcggccgcggacgccgccccgccgaggaagaagcggcggcggcgcgcgaagagctgcaagtcgcgggaggagacggagacccagcggatgacgcacatcgccgtggagcgcaaCCGCCGGCGCCAGATGAACGAGTACCTCGCCATCCTCCGGTCGCTCATGCCGGAGCCCTACGTCCAGAGGggcgaccaggcgtccattgtgggaggcgcaatcgagttcgtgaaggagctcgagcagcagctgcagtcgcttgaggcgcagaagcgaacgctgctccctcaccacaaggcgagatgcgacgacgcaacgccgatgcataacgccagcggcagcaacgtcggggccggcggctgcatggagcccacgacgacaacgagcaactgcagcagcagcgtcaccgaggacgcgccgtccgccgacgcgcccccgttcgcgcagttcttcgcgtacccgcagtacgtgtggtgccactcgccgcgcgactccaccaccaccaccaccgcggcgtctgcgtcggcgtcggcttcggcgtcgtcgtcgtcgccggccacggtggcggcggcgctccagtccgagcaccgctccgggttggccgacatcgaggtgagcctggtcgagacgcacgccagcgtccgtgtcatgtcaccgcggcggccagggcagctgctcaagatgatcgccggcctgcaggccctccggctcaccgtgctgcacctcaacgtcaccacgctggactcccttgtgctctacaccctcagcgtcaaggtggaggaaggatgcagcctgacgacggtggacgacatcgcggcggcggtgcaccacgtgctctgcatcgtcgacgcggaggcggccgcctcggagcatctcctcgcggcggggcaactggccacgacggcgacggcggtggcgaagagagaactcgcgacgtacatgtactga
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| Protein seq | MSTLVDALCAPCSDTALIYDTFNASAAASFLFDNAAAFCDADILGATATGEKEATSSAAAAAADAAPPRKKRRRRAKSCKSREETETQRMTHIAVERNRRRQMNEYLAILRSLMPEPYVQRGDQASIVGGAIEFVKELEQQLQSLEAQKRTLLPHHKARCDDATPMHNASGSNVGAGGCMEPTTTTSNCSSSVTEDAPSADAPPFAQFFAYPQYVWCHSPRDSTTTTTAASASASASASSSSPATVAAALQSEHRSGLADIEVSLVETHASVRVMSPRRPGQLLKMIAGLQALRLTVLHLNVTTLDSLVLYTLSVKVEEGCSLTTVDDIAAAVHHVLCIVDAEAAASEHLLAAGQLATTATAVAKRELATYMY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0691500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g46560 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0691500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0029740 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029810 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0029670 | RBH | 0.268931 | 1.423666 | 0.414317 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0029270 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0029480 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0461000 | RBH | 2.333501 | 1.217656 | 1.6359215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0029280 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0488900 | RBH | 4.379794 | 0.0894745 | 10.7906105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0029580 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0029320 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0029630 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024840 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0029150 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029730 | RBH | 0.0 | 0.0 | 0.787011 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0029500 | RBH | 0.0 | 0.0 | 0.000000 |
