Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0029100 | OGI:02079210 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:29742110-29743165 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggattcaacatcgcagttaaagataactgcgtataaaattccaatatatgtgcaaataagttacagcaatttttcacacatttccccccaacaaatcggtgcttacatacatcctggtagctgatgctaccaaatgctcaccattgctagctagtcacactactcactggtactcacaggcaaaacctaaaaaagaatggaatctacaaggctaaatgaaaaccaagaaaagggaggaaagaaaagaaatcaatagagattaaccaatgaggttgcacactggttaatgtctgtctaatgatgtcttctttttttcccatcttggttaaagaccagacagacgcagagttagtgcgcatgccactacgccaactctggcccctcggcgtcgcaggccggcgccttccagtaattcaagagcagcgcgccgatgccgcggccgccggagcgcgcgccgcagcggccgcaccgctcgccggggggcatctcggcggcgacgagcacgcggcggcacgacgggcacgacgagtgcgcgcgcagccacgtgtcgatgcaggcggcgtggaagcggtggtcgcactgcggcagcacgcgcacggcctgcccgtcctcgaactccacgaggcagatggcgcactcctccgcctcgccgccgccgccgtcggagacgtacgtcacggtcgggagcgaccgcagcacctccttcttgacgcccttgttcgccgcggcggcgccaccgccgccgccgccagccgctgtcccgccgccggcggcccgcgcccagcggcgcgtgcacgcgcaccgggcgacgaggccgaggccgaggacgcagatgagcgcgcagagcagcccggcgaggatgacgacgaggtccgagttgagtgagtcctccaccgagccggaggcggccgcctcaaggagcattctcgccatggctggcacaccaggagatcgatcgaatcgaagaaaaatggcgtgatcaagcgagccgcgagctagctaagctgccgagcagtgtgggagattgagcagcgcgagaggcgtgtgaggtagtgt
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| CDS seq | atggcgagaatgctccttgaggcggccgcctccggctcggtggaggactcactcaactcggacctcgtcgtcatcctcgccgggctgctctgcgcgctcatctgcgtcctcggcctcggcctcgtcgcccggtgcgcgtgcacgcgccgctgggcgcgggccgccggcggcgggacagcggctggcggcggcggcggtggcgccgccgcggcgaacaagggcgtcaagaaggaggtgctgcggtcgctcccgaccgtgacgtacgtctccgacggcggcggcggcgaggcggaggagtgcgccatctgcctcgtggagttcgaggacgggcaggccgtgcgcgtgctgccgcagtgcgaccaccgcttccacgccgcctgcatcgacacgtggctgcgcgcgcactcgtcgtgcccgtcgtgccgccgcgtgctcgtcgccgccgagatgccccccggcgagcggtgcggccgctgcggcgcgcgctccggcggccgcggcatcggcgcgctgctcttgaattactggaaggcgccggcctgcgacgccgaggggccagagttggcgtag
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| Protein seq | MARMLLEAAASGSVEDSLNSDLVVILAGLLCALICVLGLGLVARCACTRRWARAAGGGTAAGGGGGGAAAANKGVKKEVLRSLPTVTYVSDGGGGEAEECAICLVEFEDGQAVRVLPQCDHRFHAACIDTWLRAHSSCPSCRRVLVAAEMPPGERCGRCGARSGGRGIGALLLNYWKAPACDAEGPELA |
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| Function | RING-H2 finger protein ATL80 [UniProtKB/Swiss-Prot:Q9LM69] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0029100 | OsLiXu_02g0029100.01 | Chr02 | 29742110 | 29743165 | - | NAM | ||
| CDS seq | atggcgagaatgctccttgaggcggccgcctccggctcggtggaggactcactcaactcggacctcgtcgtcatcctcgccgggctgctctgcgcgctcatctgcgtcctcggcctcggcctcgtcgcccggtgcgcgtgcacgcgccgctgggcgcgggccgccggcggcgggacagcggctggcggcggcggcggtggcgccgccgcggcgaacaagggcgtcaagaaggaggtgctgcggtcgctcccgaccgtgacgtacgtctccgacggcggcggcggcgaggcggaggagtgcgccatctgcctcgtggagttcgaggacgggcaggccgtgcgcgtgctgccgcagtgcgaccaccgcttccacgccgcctgcatcgacacgtggctgcgcgcgcactcgtcgtgcccgtcgtgccgccgcgtgctcgtcgccgccgagatgccccccggcgagcggtgcggccgctgcggcgcgcgctccggcggccgcggcatcggcgcgctgctcttgaattactggaaggcgccggcctgcgacgccgaggggccagagttggcgtag
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| Protein seq | MARMLLEAAASGSVEDSLNSDLVVILAGLLCALICVLGLGLVARCACTRRWARAAGGGTAAGGGGGGAAAANKGVKKEVLRSLPTVTYVSDGGGGEAEECAICLVEFEDGQAVRVLPQCDHRFHAACIDTWLRAHSSCPSCRRVLVAAEMPPGERCGRCGARSGGRGIGALLLNYWKAPACDAEGPELA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.666225 | 0.327002 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0686100 | RBH | 0.464593 | 0.0 | 1.703283 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g46100 | RBH | 0.312991 | 0.0 | 0.436796 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0686100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0029370 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029430 | RBH | 0.0 | 0.0 | 0.564763 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0029300 | RBH | 0.0 | 0.0 | 0.313790 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028890 | RBH | 0.0 | 0.055911 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0029090 | RBH | 0.0 | 0.0 | 1.071808 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0456700 | RBH | 0.8013225 | 20.0547905 | 3.363869 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0028890 | RBH | 0.074401 | 0.303568 | 0.164012 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0484400 | RBH | 1.551896 | 40.1646615 | 7.5974235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0029210 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0028950 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0029240 | RBH | 0.0 | 5.965249 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024440 | RBH | 0.0 | 0.211825 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0028780 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029340 | RBH | 0.0 | 0.843060 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0029110 | RBH | 0.0 | 7.493937 | 2.197496 |
