Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0028900 | OGI:02078690 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:29563772-29566196 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gccccatggggaacaaaagaaacaaacagttaagagaaactgcaaggcagaatttgcggcttttaacagctgaaaaccagcttagctaatagttgccacttaattaatataaaggttgctctctttctcacagattagaaaggcaaaaataacgagtctaggaaaaacatttttccccaattctgatttaagcagcaactgaaggctacacatcgtcgctcagtgtgtggaactgaacagagctcggctgacaataccagttgcctcaatgtaacgatcaacacagcgtgatatgcaactgctctcgctcccgctcaagcttgatcctggctttgtcacgcacttggcaaagcacttgtttccaacagtctgtaacaacaaaacaagagagaattacgaccatgttatgtgtttaacaaagaagcaatgcctggaattggcatgttttatttcaaacactaccctttttctcatgtaatctgtattacatatatgtcatgtaaaccaacagtggcagaatcacttgatcagcaagactaagggtgagtttgaggagaaggtgattgaggaaattgggaagatacgtaaaacgaggtgagccattagctcatgattaattgagtattaattattttaaatttcaaaaatggattaatatgatttttaaaagcaactttcctataggaaatttttacaaaaaacgcaccgtttagtaatttggaaagcgtgcgcgcggaaaacgagatgttatctccctcaatgttacccgaacgaacgcagcctaattactcatatgtcaaacttcgtagtaatagtgtagcaacaggaagggtcaacttcaatgctaactttgtgaacacatattttacctttctggtcgtggcaggccagcacaagttaatagttctgactctatgttgagttcaaatatataatgaacacagaagtgaaagacatacaaaatgtcaccatagttttaagcaaaggaaaagcacttgaaatagaaaatgcaacagttagaagtatataccaaaactcaggcctgtattataaagtctaggtgactcgatgtccctggtccagtcaatttaaatagtttactattatatctattggttttataatatgcttaagtcatggatatgtactggatcctaagttccttctatcagtcctacaaggttgtggtcatcactagactggggagatcttacctcatcaagacaacattttaagtttccaaattcaatatgtattgtaaatgatagatgagtttgatgcacctattccaaatacgttgttacagttcaccaaagggtgtgctcaactgtgcttgctgcgcagccacagcagccagcatatcgatcaaccccaatttctcttggtacttaaagtgtgcattaagactgttaaatttatgctcttcaatcctcagttttcttgataaattcaagaaatcatcaccgtataaccgtatatgccaagtaaaaataacaaaagaaatcaacagatgagccaccacatccaattgtgtgattcaattggacatttggacgcaatgcacaccagtatgatcaacttgtatcagtatgcagattacaatcaatggatacagtgagcatgaaagtcacagcatgggcatgttgattccaatttaataatactttcttaagcggttccaagttaataatccttttcttggacaaaggaaatcaatttatgagttttagccatcctatgcaaacaataggacttactggagtgtaatgggattgagtatagatttaatcatacaagatacaaggatacagaaactaaaatccatcctatgccaacatgtttaaactgtatcgccctccaatccggtaaatggaactgttgtaacttgtagaacatcaaaccactctaacgaagctattgttaagcttgttgaaggtgctactgaatactgatgctcattactttagtactagaatacggaaaaccacacaacaggaaactaattctacccccaaatattcgcttccgtagagtgctaccagcgaaatctagtgtcacctaaaccaagtatccacctacctaatgaatattcatccatacagattcgcattaacaaacgagatacaagagaggaaacgatttgggtggggaggatctcacctcaaggaactcctgggcgtaggcctgagcgagctgcgccttgatctggtccatgagcgcctccgtattggggggcgacccggacgacgacgagaaggagtccatgccggcttcccaccttcttgattcccaagccttcgtcggcgaccggttgttgaagagcgctctccagcaactacgattctccggcgcggcggggtgtgcgaagcggaggcggcgggcagagcggagtaataaaaccctagctttactggatcagaaccac
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| CDS seq | atggactccttctcgtcgtcgtccgggtcgccccccaatacggaggcgctcatggaccagatcaaggcgcagctcgctcaggcctacgcccaggagttccttgagactgttggaaacaagtgctttgccaagtgcgtgacaaagccaggatcaagcttgagcgggagcgagagcagttgcatatcacgctgtgttgatcgttacattgaggcaactggtattgtcagccgagctctgttcagttccacacactga |
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| Protein seq | MDSFSSSSGSPPNTEALMDQIKAQLAQAYAQEFLETVGNKCFAKCVTKPGSSLSGSESSCISRCVDRYIEATGIVSRALFSSTH |
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| Function | Mitochondrial import inner membrane translocase subunit Tim13 [UniProtKB/Swiss-Prot:Q9XGY5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0028900 | OsLiXu_02g0028900.01 | Chr02 | 29563772 | 29566196 | - | NAM | ||
| CDS seq | atggactccttctcgtcgtcgtccgggtcgccccccaatacggaggcgctcatggaccagatcaaggcgcagctcgctcaggcctacgcccaggagttccttgagactgttggaaacaagtgctttgccaagtgcgtgacaaagccaggatcaagcttgagcgggagcgagagcagttgcatatcacgctgtgttgatcgttacattgaggcaactggtattgtcagccgagctctgttcagttccacacactga
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| Protein seq | MDSFSSSSGSPPNTEALMDQIKAQLAQAYAQEFLETVGNKCFAKCVTKPGSSLSGSESSCISRCVDRYIEATGIVSRALFSSTH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.581468 | 4.701780 | 1.951397 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0682600 | RBH | 0.900899 | 1.826375 | 6.335950 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g45820 | RBH | 0.455455 | 1.018312 | 1.238253 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0682600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0029180 | RBH | 0.000000 | 12.655017 | 10.180633 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029240 | RBH | 0.788229 | 2.757452 | 0.545369 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0029110 | RBH | 1.439816 | 19.055233 | 9.054329 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028700 | RBH | 0.302176 | 0.449897 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0028880 | RBH | 8.088134 | 29.455000 | 18.285917 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0453400 | RBH | 33.0697705 | 34.0145665 | 72.278469 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0028680 | RBH | 0.158876 | 4.010854 | 0.779886 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0481200 | RBH | 30.1815795 | 19.9219985 | 133.9360735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0029010 | RBH | 0.376422 | 0.519269 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0028740 | RBH | 0.861736 | 48.441849 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0029030 | RBH | 0.0 | 10.793578 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024190 | RBH | 0.063830 | 0.000000 | 0.247728 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0028580 | RBH | 0.301397 | 9.363757 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029150 | RBH | 0.507393 | 20.859737 | 4.093709 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0028920 | RBH | 1.624778 | 27.029404 | 9.454342 |
