Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0026580 | OGI:02073470 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:27611759-27614360 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgttagtttcattgttctctgagcttgtttcaagtagtaatgctagtggtcctgaaattttgccccttgttgatcaccacagaagaacatgtgctactccatgttcactctcgttcatggttgattgcttgatcaaggcatgcatcacttgctatgatgtacaagcaaccatatgcttatttagtggcatttgcaggcttggagttgtcccatctgtttgggcttggaacctgcttctcaaatttatagctgagactggtgaatatgagatggttctcgcagcttataatgaaatgaagtgctttcagctgactcccgatgtttatacatttgccatagtcactaggtcactttttcaagcaaagaaagtggatgaggctttgcaagtttgggccgagatgactgaaatgggagtgaaaccagatgcacgtgggtactcgtcatttctaattggtctgtgtgattgcagaaaatatgatttagcttatgttattctacaagagattaatagggagaaggttcctgttgaggccatggcttataacatggtaatggatggactatgcaaagaaatgagattggatgaggcggaaaagctcttggaaaacaaggccagacaaggatccaaccctgatgtatatggttatagctatctgattcggagttattgcaaaatgggcaacctaataaaggctgtggatcattatgaagccatggtttctcatggtattgagacaaattgccacattgtgagttaccttctgcaatgcttcaggaagttaggcatgacatctgaagtaatcgcgtatttcctgaaatttaaagattcagggcttcatcttgacaaggtgatttataacattgctatggatacttattgcaagaatgggaacatgaacgaggcagttaagctactgaatgaaatgaagtgtgggggtttgacacctgacaaaattcactacacatgcctaatcaatggttactgtttgaagggagaaatgcaaaatgcacagcaggtatttgaggaaatgctgaaggccaatattgagccagatatagttacatataacatattggctagtgggttttgcaagagcggtcttgttatggaggtgtttgatcttctagaccgtatggcagatcaaggtttggagcctaattcactcacctacggtatagcaattgttggattttgtagaggaggcaaccttagtgaagcagaggttctatttaatgtagtagaagaaaaaggaattgatcatatcgaagtgatgtacagttcgatggtttgtggctatttgctttcaggctggactgatcatgcttacatgctttttgtaagggttgctcgacaaggaaatcttgtggatcatttttcatgttctaagttgataaatgacctctgtagagttggaaatgtccagggggcttcaaatgtttgtaagattatgttagaacataatgttgtacctgatgtgatttcatatagcaaactcatatcaatctattgtcagaatggagatatggacaaagctcacttatggttccatgatatggttcagcgaggactttctattgatgttattgtatacactatactgatgaatggttactgcaaggctggtcgtctgcaagaagcttgtcaattgtttgttcaaatgacaaacttgggcataaagcctgatgtgattgcatatacagttctactggatggtcacttaaaggagacccttcagcaaggttgggaggggattgctaaagagagaaggagttttcttcttagagcgaatcataacaagttattaagctccatgaaagacatgcaaattgaacctgatgtaccctgttatacggtgttgattgatggaaagtgcaaagctgaatatctagtggaagcccgggaactatttgatgagatgttgcagaaaggacttactcctgatgcttatgcttacacagctcttataaatggatattgtagccaaggggaaatatcaaaggctgaagatcttttgcaagaaatgattgacaagggaatagaaccagatgaattgaccttttcagtattaaatcagagttccttgaggtctaggaagattcagttctgtgcatgattccctctgtggtaccatgtttagtaaattctttctactgagaacacctatgtcaacagcaaggtgatgcttttatcaatcattagttaattggatttttctcttctctgcttataaaattggtcacaagtataatcttatcagcagtatatacaattctctgcaagtgtttctacacttgacagggaactaagtaccaacaattgtgaaatatactgggcatagcttgtgagtctgatcaagtaatttatgattttcaggaggtcaacattgctgatgaagaactttctgtagaaattcgcaaagaaaatgaggctcctgttgttgagagaaaagtcaagaacatttcagataccaacattaagaggttgtgcatcctacatctcagtctgcttttcaagcagacctccttgcaaatctctttgagtcctcgtgcaattgatggccttgttaaaggattggaggccaatcaacgtctagtaggtga
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| CDS seq | atgttagtttcattgttctctgagcttgtttcaagtagtaatgctagtggtcctgaaattttgccccttgttgatcaccacagaagaacatgtgctactccatgttcactctcgttcatggttgattgcttgatcaaggcatgcatcacttgctatgatgtacaagcaaccatatgcttatttagtggcatttgcaggcttggagttgtcccatctgtttgggcttggaacctgcttctcaaatttatagctgagactggtgaatatgagatggttctcgcagcttataatgaaatgaagtgctttcagctgactcccgatgtttatacatttgccatagtcactaggtcactttttcaagcaaagaaagtggatgaggctttgcaagtttgggccgagatgactgaaatgggagtgaaaccagatgcacgtgggtactcgtcatttctaattggtctgtgtgattgcagaaaatatgatttagcttatgttattctacaagagattaatagggagaaggttcctgttgaggccatggcttataacatggtaatggatggactatgcaaagaaatgagattggatgaggcggaaaagctcttggaaaacaaggccagacaaggatccaaccctgatgtatatggttatagctatctgattcggagttattgcaaaatgggcaacctaataaaggctgtggatcattatgaagccatggtttctcatggtattgagacaaattgccacattgtgagttaccttctgcaatgcttcaggaagttaggcatgacatctgaagtaatcgcgtatttcctgaaatttaaagattcagggcttcatcttgacaaggtgatttataacattgctatggatacttattgcaagaatgggaacatgaacgaggcagttaagctactgaatgaaatgaagtgtgggggtttgacacctgacaaaattcactacacatgcctaatcaatggttactgtttgaagggagaaatgcaaaatgcacagcaggtatttgaggaaatgctgaaggccaatattgagccagatatagttacatataacatattggctagtgggttttgcaagagcggtcttgttatggaggtgtttgatcttctagaccgtatggcagatcaaggtttggagcctaattcactcacctacggtatagcaattgttggattttgtagaggaggcaaccttagtgaagcagaggttctatttaatgtagtagaagaaaaaggaattgatcatatcgaagtgatgtacagttcgatggtttgtggctatttgctttcaggctggactgatcatgcttacatgctttttgtaagggttgctcgacaaggaaatcttgtggatcatttttcatgttctaagttgataaatgacctctgtagagttggaaatgtccagggggcttcaaatgtttgtaagattatgttagaacataatgttgtacctgatgtgatttcatatagcaaactcatatcaatctattgtcagaatggagatatggacaaagctcacttatggttccatgatatggttcagcgaggactttctattgatgttattgtatacactatactgatgaatggttactgcaaggctggtcgtctgcaagaagcttgtcaattgtttgttcaaatgacaaacttgggcataaagcctgatgtgattgcatatacagttctactggatggtcacttaaaggagacccttcagcaaggttgggaggggattgctaaagagagaaggagttttcttcttagagcgaatcataacaagttattaagctccatgaaagacatgcaaattgaacctgatgtaccctgttatacggtgttgattgatggaaagtgcaaagctgaatatctagtggaagcccgggaactatttgatgagatgttgcagaaaggacttactcctgatgcttatgcttacacagctcttataaatggatattgtagccaaggggaaatatcaaaggctgaagatcttttgcaagaaatgattgacaagggaatagaaccagatgaattgaccttttcagtattaaatcagagttccttgaggtctaggaagattcagttctgtgcatga
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| Protein seq | MLVSLFSELVSSSNASGPEILPLVDHHRRTCATPCSLSFMVDCLIKACITCYDVQATICLFSGICRLGVVPSVWAWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTFAIVTRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLIGLCDCRKYDLAYVILQEINREKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIRSYCKMGNLIKAVDHYEAMVSHGIETNCHIVSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHNVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSVLNQSSLRSRKIQFCA |
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| Function | Pentatricopeptide repeat-containing protein At2g26790, mitochondrial [UniProtKB/Swiss-Prot:O81028] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0026580 | OsLiXu_02g0026580.01 | Chr02 | 27611759 | 27614360 | + | NAM | ||
| CDS seq | atgttagtttcattgttctctgagcttgtttcaagtagtaatgctagtggtcctgaaattttgccccttgttgatcaccacagaagaacatgtgctactccatgttcactctcgttcatggttgattgcttgatcaaggcatgcatcacttgctatgatgtacaagcaaccatatgcttatttagtggcatttgcaggcttggagttgtcccatctgtttgggcttggaacctgcttctcaaatttatagctgagactggtgaatatgagatggttctcgcagcttataatgaaatgaagtgctttcagctgactcccgatgtttatacatttgccatagtcactaggtcactttttcaagcaaagaaagtggatgaggctttgcaagtttgggccgagatgactgaaatgggagtgaaaccagatgcacgtgggtactcgtcatttctaattggtctgtgtgattgcagaaaatatgatttagcttatgttattctacaagagattaatagggagaaggttcctgttgaggccatggcttataacatggtaatggatggactatgcaaagaaatgagattggatgaggcggaaaagctcttggaaaacaaggccagacaaggatccaaccctgatgtatatggttatagctatctgattcggagttattgcaaaatgggcaacctaataaaggctgtggatcattatgaagccatggtttctcatggtattgagacaaattgccacattgtgagttaccttctgcaatgcttcaggaagttaggcatgacatctgaagtaatcgcgtatttcctgaaatttaaagattcagggcttcatcttgacaaggtgatttataacattgctatggatacttattgcaagaatgggaacatgaacgaggcagttaagctactgaatgaaatgaagtgtgggggtttgacacctgacaaaattcactacacatgcctaatcaatggttactgtttgaagggagaaatgcaaaatgcacagcaggtatttgaggaaatgctgaaggccaatattgagccagatatagttacatataacatattggctagtgggttttgcaagagcggtcttgttatggaggtgtttgatcttctagaccgtatggcagatcaaggtttggagcctaattcactcacctacggtatagcaattgttggattttgtagaggaggcaaccttagtgaagcagaggttctatttaatgtagtagaagaaaaaggaattgatcatatcgaagtgatgtacagttcgatggtttgtggctatttgctttcaggctggactgatcatgcttacatgctttttgtaagggttgctcgacaaggaaatcttgtggatcatttttcatgttctaagttgataaatgacctctgtagagttggaaatgtccagggggcttcaaatgtttgtaagattatgttagaacataatgttgtacctgatgtgatttcatatagcaaactcatatcaatctattgtcagaatggagatatggacaaagctcacttatggttccatgatatggttcagcgaggactttctattgatgttattgtatacactatactgatgaatggttactgcaaggctggtcgtctgcaagaagcttgtcaattgtttgttcaaatgacaaacttgggcataaagcctgatgtgattgcatatacagttctactggatggtcacttaaaggagacccttcagcaaggttgggaggggattgctaaagagagaaggagttttcttcttagagcgaatcataacaagttattaagctccatgaaagacatgcaaattgaacctgatgtaccctgttatacggtgttgattgatggaaagtgcaaagctgaatatctagtggaagcccgggaactatttgatgagatgttgcagaaaggacttactcctgatgcttatgcttacacagctcttataaatggatattgtagccaaggggaaatatcaaaggctgaagatcttttgcaagaaatgattgacaagggaatagaaccagatgaattgaccttttcagtattaaatcagagttccttgaggtctaggaagattcagttctgtgcatga
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| Protein seq | MLVSLFSELVSSSNASGPEILPLVDHHRRTCATPCSLSFMVDCLIKACITCYDVQATICLFSGICRLGVVPSVWAWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTFAIVTRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLIGLCDCRKYDLAYVILQEINREKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIRSYCKMGNLIKAVDHYEAMVSHGIETNCHIVSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHNVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSVLNQSSLRSRKIQFCA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.510486 | 0.309404 | 0.800635 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0644600 | RBH | 1.579725 | 1.764628 | 1.460241 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g43080 | RBH | 1.145759 | 0.839330 | 0.293937 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0644600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0026910 | RBH | 0.418203 | 8.669443 | 4.428381 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0027020 | RBH | 0.053063 | 0.870363 | 0.926324 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0026890 | RBH | 8.026004 | 13.213400 | 40.542610 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0026470 | RBH | 1.242461 | 0.661791 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0026570 | RBH | 27.944141 | 28.666689 | 53.267281 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0422200 | RBH | 3.639537 | 9.4119015 | 5.8597675 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0026380 | RBH | 0.449965 | 0.226328 | 0.737718 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0450000 | RBH | 3.5794395 | 11.276387 | 13.470613 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0026730 | RBH | 0.164089 | 0.078907 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0026400 | RBH | 0.363400 | 3.238763 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0026760 | RBH | 3.046966 | 4.086886 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024260 | RBH | 0.888876 | 0.104404 | 5.394850 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0026270 | RBH | 1.522554 | 13.608363 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G026880 | RBH | 3.377622 | 13.641818 | 7.471311 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0026610 | RBH | 13.649541 | 69.467484 | 26.879532 |
