Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0026210 | OGI:02072730 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:27316418-27319235 | ||||||||
| Gene Symbol | RLCK78, OsRLCK78 | ||||||||||
| DNA seq | ctagctgagccacaatccatcctccgccatcaccttctcgttcctctccttctgcttcgaactcaagaaacgctcaccggcacggcggcacgcccttcccttggcgggcagcactgtctcacggcagcgcccttccctcggtcctgcctccccacaagctcgggtgccacgagcttgagggtagccaaatctggccgccacggcccatgagcaacggccggcggtggtccacatgcctaacaagtatctcttccccattcccacctAaaaaaaattgagactacgtcgccctccccccgcctccccatgtgctcgggtgtggaacggccaaatcccgccgccgcgagcttgggggccgctagatccagccgccacgagtaacggcgacaacggtccacatagctagcatgtacttcttccccatcctcacccAaaaaatccctcctcccgggtctctcccaccacccttagatttaactatggtatttctagatcagagtgatggtggtgagtggcaacaacatccttggcctccaatgggtggccgtgtcggtggcctccaatgggcggtggtgaccttggtctttgatgggacgagaccttggagccatgtattaatttgtgatttagtttttttatgaatgttaagcttgtaattttctagattgatcgtgattcattgtcattggatttgtgataattttgtaattcggtttcggtgtgtaattcttggttcgaagcttaacttttttttttatcattcttgcaacctcaaatgagtcgattcgttgtttctccccataggtaccgctaatatgatgacagttggaaaatccagaacctatgtaagattcccagaaccagcacacatcagtgttcggtacttatggccgttgcggtccccgtcggccacctcatcttcggcgagagagccggcgagacgaccatcacgcctgggctaccgacggtgtccgccgccgctgcatcgtgggtgtggccgtcaccgacgaagcccgggcagagcatctccagctcttccaagcacaccggccgcgacagcagcttcaccacctgccgcatcgtcggccggctgcacggcttcgcctgcgtgcaggccagcgccaccttgatgaacttgagcgcctcctcctccgggtaacctcccttcatgctcggatccaccatgtccagcaggctgtcctgttcgtgcagcacccacgcctgcaacaacaaacatgatcgatgctgttcttcatcagcagcgtagacatggtggcagaaattatcagggttcagcacctgacctgccgcacgagaaacatgtctgatcgaatggtctgcgacatcctccttccactgatgatctcaagaatgagcactccgaagctgtagacatctgccttcttcgtcagctgtccgtgcacgacatattcaggtgccatgtagccactgcatgcagagaataaggtttatttcgattatgttgcatgcagctcgatcattgctgaagcctgaaagaacagcttacgttgtcccaatcacacgtgtgctaacatgactaacattgtccgggaacagcttggcaactccaaagtctccgatttttgggatgtagtttctgtcaaggagaacgttgctagccttgatgtctctgtgcacaatgcttggctcgtgctcttcgtgaagatagctcagtcccttggcaactcccatacagatgtccgatcttgtgctccagctgaggtcagttactccagcagctgaacctaaatgttgcaggagatttgtaagtacgccgttgctccagatagagcataattgtggaaatttaatggagatctcttaccctgcaatgcattgtcaaggctgttgttctcgacgtactcgtaaatcaggatccttttttgcctctgaacacagcagcccagcaacctgacaaggtttgcgtgcttagcttcagtaatgctctcgatttcggtcaggaattcgttgatcccttgttcagattcagcagacagaacctttgcagcaaatgcagtaccatcttcaaaagttccctgtgtcatgggacagagattagtttctgtttccatcctggcttttcggctgctgatttactccatttcttcctactcttcgtgcagcagttcagatttttcagttaaaacgaacaaaatatcaagtgtaaaatacgtagtagtatcttggctaccttgtacacagttccaaatccacctcggcctatcttgttgccatcgtcgaaattgcttgttgctgctctgatctctctataggagaatagctggacatttttcaagttcagaagctctgttcagaaaacaatacaaagaaacaacgtcaccatttggagttttggacaaaccgcatgagttcaaacaagctctccagaactcatgcatcacgaaaacgtccgcaaacaattagataatcatctaaaaatcgccagcgatgcatgactagaaaagaatttatactacaaactcccaagtcctaactgctaggaacttgacatggctaacatggaagaaacaagttgtcaaattgttactacctttgatattttcttgggatccacagaagcatctcttcatcagagccatctttcaagctggagctgtgacctggattcctggagcaatcctctctttctcaggccaaaacgggagctccaaaagaaaggccaagaatttgttgaagtgagaggaacagggtttccaagcgagcattaaatctttcagaggtgttggctcaagaagagagagagctctattacagcaagcaacaaggtgaagcaatg
More
|
||||||||||
| CDS seq | atggctctgatgaagagatgcttctgtggatcccaagaaaatatcaaagagcttctgaacttgaaaaatgtccagctattctcctatagagagatcagagcagcaacaagcaatttcgacgatggcaacaagataggccgaggtggatttggaactgtgtacaagggaacttttgaagatggtactgcatttgctgcaaaggttctgtctgctgaatctgaacaagggatcaacgaattcctgaccgaaatcgagagcattactgaagctaagcacgcaaaccttgtcaggttgctgggctgctgtgttcagaggcaaaaaaggatcctgatttacgagtacgtcgagaacaacagccttgacaatgcattgcagggttcagctgctggagtaactgacctcagctggagcacaagatcggacatctgtatgggagttgccaagggactgagctatcttcacgaagagcacgagccaagcattgtgcacagagacatcaaggctagcaacgttctccttgacagaaactacatcccaaaaatcggagactttggagttgccaagctgttcccggacaatgcgtgggtgctgcacgaacaggacagcctgctggacatggtggatccgagcatgaagggaggttacccggaggaggaggcgctcaagttcatcaaggtggcgctggcctgcacgcaggcgaagccgtgcagccggccgacgatgcggcaggtggtgaagctgctgtcgcggccggtgggaatggggaagagatacttgttaggcatgtggaccaccgccggccgttgctcatgggccgtggcggccagatttggctaccctcaagctcgtggcacccgagcttgtggggaggcaggaccgagggaagggcgctgccgtgagacagtgctgcccgccaagggaagggcgtgccgccgtgccggtgagcgtttcttgagttcgaagcagaaggagaggaacgagaaggtgatggcggaggatggattgtggctcagctag
More
|
||||||||||
| Protein seq | MALMKRCFCGSQENIKELLNLKNVQLFSYREIRAATSNFDDGNKIGRGGFGTVYKGTFEDGTAFAAKVLSAESEQGINEFLTEIESITEAKHANLVRLLGCCVQRQKRILIYEYVENNSLDNALQGSAAGVTDLSWSTRSDICMGVAKGLSYLHEEHEPSIVHRDIKASNVLLDRNYIPKIGDFGVAKLFPDNAWVLHEQDSLLDMVDPSMKGGYPEEEALKFIKVALACTQAKPCSRPTMRQVVKLLSRPVGMGKRYLLGMWTTAGRCSWAVAARFGYPQARGTRACGEAGPREGRCRETVLPAKGRACRRAGERFLSSKQKERNEKVMAEDGLWLS |
||||||||||
| Function | Cold-responsive protein kinase 1 [UniProtKB/Swiss-Prot:Q93YN1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0026210 | OsLiXu_02g0026210.01 | Chr02 | 27316418 | 27319235 | - | NAM | ||
| CDS seq | atggctctgatgaagagatgcttctgtggatcccaagaaaatatcaaagagcttctgaacttgaaaaatgtccagctattctcctatagagagatcagagcagcaacaagcaatttcgacgatggcaacaagataggccgaggtggatttggaactgtgtacaagggaacttttgaagatggtactgcatttgctgcaaaggttctgtctgctgaatctgaacaagggatcaacgaattcctgaccgaaatcgagagcattactgaagctaagcacgcaaaccttgtcaggttgctgggctgctgtgttcagaggcaaaaaaggatcctgatttacgagtacgtcgagaacaacagccttgacaatgcattgcagggttcagctgctggagtaactgacctcagctggagcacaagatcggacatctgtatgggagttgccaagggactgagctatcttcacgaagagcacgagccaagcattgtgcacagagacatcaaggctagcaacgttctccttgacagaaactacatcccaaaaatcggagactttggagttgccaagctgttcccggacaatgcgtgggtgctgcacgaacaggacagcctgctggacatggtggatccgagcatgaagggaggttacccggaggaggaggcgctcaagttcatcaaggtggcgctggcctgcacgcaggcgaagccgtgcagccggccgacgatgcggcaggtggtgaagctgctgtcgcggccggtgggaatggggaagagatacttgttaggcatgtggaccaccgccggccgttgctcatgggccgtggcggccagatttggctaccctcaagctcgtggcacccgagcttgtggggaggcaggaccgagggaagggcgctgccgtgagacagtgctgcccgccaagggaagggcgtgccgccgtgccggtgagcgtttcttgagttcgaagcagaaggagaggaacgagaaggtgatggcggaggatggattgtggctcagctag
More
|
|||||||
| Protein seq | MALMKRCFCGSQENIKELLNLKNVQLFSYREIRAATSNFDDGNKIGRGGFGTVYKGTFEDGTAFAAKVLSAESEQGINEFLTEIESITEAKHANLVRLLGCCVQRQKRILIYEYVENNSLDNALQGSAAGVTDLSWSTRSDICMGVAKGLSYLHEEHEPSIVHRDIKASNVLLDRNYIPKIGDFGVAKLFPDNAWVLHEQDSLLDMVDPSMKGGYPEEEALKFIKVALACTQAKPCSRPTMRQVVKLLSRPVGMGKRYLLGMWTTAGRCSWAVAARFGYPQARGTRACGEAGPREGRCRETVLPAKGRACRRAGERFLSSKQKERNEKVMAEDGLWLS
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0026210 | OsLiXu_02g0026210.02 | Chr02 | 27317176 | 27319204 | - | IsoSeq | ||
| CDS seq | gctctctctcttcttgagccaacacctctgaaagatttaatgctcgcttggaaaccctgttcctctcacttcaacaaattcttggcctttcttttggagctcccgttttggcctgagaaagagaggattgctccaggaatccaggtcacagctcca |
|||||||
| Protein seq | ALSLLEPTPLKDLMLAWKPCSSHFNKFLAFLLELPFWPEKERIAPGIQVTAP |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.749138 | 0.0 | 0.104665 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0639100 | RBH | 1.007600 | 0.857224 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g42620 | RBH | 0.627798 | 0.539636 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0639100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0026540 | RBH | 0.244409 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0026650 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0026520 | RBH | 1.176836 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0026090 | RBH | 0.396792 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0026200 | RBH | 1.912028 | 0.0 | 1.018977 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0417500 | RBH | 6.7509185 | 0.0714075 | 0.0186815 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0026010 | RBH | 0.497528 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0444900 | RBH | 5.359338 | 12.4520375 | 8.7034665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0026360 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0026020 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0026410 | RBH | 12.609907 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0023060 | SBH | 0.0 | 0.282317 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0025880 | RBH | 0.783274 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G026520 | RBH | 0.498169 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0026250 | RBH | 1.195749 | 0.0 | 0.0 |
