Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0025620 | OGI:02071160 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:26729075-26731392 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagaggatgacgacagccgaattgtggcagtgacggtcttgttttccggcgacggcgaggatcgatagcctcaggttcttcgggggtccatcgcgacgatgataccacggcgccaacggtttcgctgttgtcagtgcggctgacgcacatgaagctggcagaaatgtcagctcaaactcagttctcagtttcagagtgcatctgaaagtagaagagagcttgcagagctgcataacatatgatgtaaattaaggtgagaacgctcacaagtctcaagactacagtactatgttaagcttgctgtactacaatagattggcagttgaacatcacattaaggaacatgattgaactcctcgcaaaaaaaaaaaaaaggaacatgattgaactgaatagcaaaaaagcgaatccgtctgaatacatttcacttgaatcaaatattcgtattacaattaggagctagatgaaaatttaaaaccaataacagctcctgatatacaaacctatacttctcacaagacttactaagattcataatgtggacaaatctatctatctatatgtaaattaacacctcagtgcgggggacctagatcgaattacatataaattgaagggcttttcgtaaaatttccaccatggttgctatccgacgtggacaacgcgagaggtggcttgaggcgccggccttgaagaggttaattcccaacatttggaactatttaactgggaaaaaaaataaaatcaagactttcaatatcaaactgacccttctgagagagagcgggatcgcttccctgtagataacgtattcggttgttcaatcattgcgtaacgcgttcggtatttatagtatggaggaatgctagattgccattccagggcatcaatgttctcatcaagctggccctttttggctataaaagcattgcttgtgggatgatcattgagccgagaggaacttgcttcattgtatgtcactggtacaaaccgatttaatttactaaaccaaactatagtccgcccacttttagctgcaaacatgtcccttggatgttcacctagtagacggaaatgccagtttgtgataattttcatgcgtttgagaaccttgtaccagaattgaacactaaaattagatctgagtatgccaccaataatgtttgcatgtaggaatgctccattggcctgggccgcgatctccatacatatggatgttagcttcggctcctcttcaggattagtgctgccaaatgcaattgttttcaagaaataccaaaaagcttcTtttgggagcatatctaactgaagtgtttcggttgttccaaaagttgctatcttatttgattgacttgttattatgattttactcacaggcgccgctatgttgtctcctctcagactagacaatattcttctccatgtttcatcatccatgtcatcaacaagttcaattactactagtgattgtttagttgaggcaggattttgatgtttgatgacaccggtatctgcaactgcaccctcagtactaccggtgtaatagaaaacaatcgtgaagaagtatttacgcaccctttcatcatggcagacattctcaacaagagtgctcttgccaactcttgcaggaccaattatcggaagcactgcaacaccttccgcgccagcacgatgtggttctagcaagaagctgatgatcctctcttgttctgcttgacggccaaacatgcagttctccaacaacaggtagctgcaataaggctgtcgaactatacgagggtagcttctgagtgacataacaaactcctctgaaatgatgctttcaaggcgaccaagcatctttagaagctcttttttctcctggtcttcagacactattttccttgccatcgtagagaaacggaaccgcttcaatggattgaaaggaaacgaggccaaagagtgatcatccacctcatccggagcgtgccctagagcgatccgatacctgagaataactagggaaaaaacgatgatagattgacaaatagtataaacactggtgttagttatgcaatttcccctacctgaaattatcaagaaagtagtagcctctgtacatcacatttctcatcgtctttagctgcagaagcatcgcttggtttgtgattctcctcccgttggcctcctcaacgacggtttggatccgcagcagcatgcgttgtaactgctgtagattctcctccacaccctgctgctgctggcagtatctgtctatcacgaaggatatggatctgctgagaagatcagcgagaaccgcagaaaggaacgtctccat
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| CDS seq | atggagacgttcctttctgcggttctcgctgatcttctcagcagatccatatccttcgtgatagacagatactgccagcagcagcagggtgtggaggagaatctacagcagttacaacgcatgctgctgcggatccaaaccgtcgttgaggaggccaacgggaggagaatcacaaaccaagcgatgcttctgcagctaaagacgatgagaaatgtgatgtacagaggctactactttcttgataatttcaggtatcggatcgctctagggcacgctccggatgaggtggatgatcactctttggcctcgtttcctttcaatccattgaagcggttccgtttctctacgatggcaaggaaaatagtgtctgaagaccaggagaaaaaagagcttctaaagatgcttggtcgccttgaaagcatcatttcagaggagtttgttatgtcactcagaagctaccctcgtatagttcgacagccttattgcagctacctgttgttggagaactgcatgtttggccgtcaagcagaacaagagaggatcatcagcttcttgctagaaccacatcgtgctggcgcggaaggtgttgcagtgcttccgataattggtcctgcaagagttggcaagagcactcttgttgagaatgtctgccatgatgaaagggtgcgtaaatacttcttcacgattgttttctattacaccggtagtactgagggtgcagttgcagataccggtgtcatcaaacatcaaaatcctgcctcaactaaacaatcactagtagtaattgaacttgttgatgacatggatgatgaaacatggagaagaatattgtctagtctgagaggagacaacatagcggcgcctgtgagtaaaatcataataacaagtcaatcaaataagatagcaacttttggaacaaccgaaacacttcagttagatatgctcccaaaAgaagctttttggtatttcttgaaaacaattgcatttggcagcactaatcctgaagaggagccgaagctaacatccatatgtatggagatcgcggcccaggccaatggagcattcctacatgcaaacattattggtggcatactcagatctaattttagtgttcaattctggtacaaggttctcaaacgcatgaaaattatcacaaactggcatttccgtctactaggtgaacatccaagggacatgtttgcagctaaaagtgggcggactatagtttggtttagtaaattaaatcggtttgtaccagtgacatacaatgaagcaagttcctctcggctcaatgatcatcccacaagcaatgcttttatagccaaaaagggccagcttgatgagaacattgatgccctggaatggcaatctagcattcctccatactataaataccgaacgcgttacgcaatgattgaacaaccgaatacgttatctacagggaagcgatcccgctctctctcagaaggatgcactctgaaactgagaactgagtttgagctgacatttctgccagcttcatgtgcgtcagccgcactgacaacagcgaaaccgttggcgccgtggtatcatcgtcgcgatggacccccgaagaacctgaggctatcgatcctcgccgtcgccggaaaacaagaccgtcactgccacaattcggctgtcgtcatcctctag
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| Protein seq | METFLSAVLADLLSRSISFVIDRYCQQQQGVEENLQQLQRMLLRIQTVVEEANGRRITNQAMLLQLKTMRNVMYRGYYFLDNFRYRIALGHAPDEVDDHSLASFPFNPLKRFRFSTMARKIVSEDQEKKELLKMLGRLESIISEEFVMSLRSYPRIVRQPYCSYLLLENCMFGRQAEQERIISFLLEPHRAGAEGVAVLPIIGPARVGKSTLVENVCHDERVRKYFFTIVFYYTGSTEGAVADTGVIKHQNPASTKQSLVVIELVDDMDDETWRRILSSLRGDNIAAPVSKIIITSQSNKIATFGTTETLQLDMLPKEAFWYFLKTIAFGSTNPEEEPKLTSICMEIAAQANGAFLHANIIGGILRSNFSVQFWYKVLKRMKIITNWHFRLLGEHPRDMFAAKSGRTIVWFSKLNRFVPVTYNEASSSRLNDHPTSNAFIAKKGQLDENIDALEWQSSIPPYYKYRTRYAMIEQPNTLSTGKRSRSLSEGCTLKLRTEFELTFLPASCASAALTTAKPLAPWYHRRDGPPKNLRLSILAVAGKQDRHCHNSAVVIL |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0025620 | OsLiXu_02g0025620.01 | Chr02 | 26729075 | 26731392 | - | NAM | ||
| CDS seq | atggagacgttcctttctgcggttctcgctgatcttctcagcagatccatatccttcgtgatagacagatactgccagcagcagcagggtgtggaggagaatctacagcagttacaacgcatgctgctgcggatccaaaccgtcgttgaggaggccaacgggaggagaatcacaaaccaagcgatgcttctgcagctaaagacgatgagaaatgtgatgtacagaggctactactttcttgataatttcaggtatcggatcgctctagggcacgctccggatgaggtggatgatcactctttggcctcgtttcctttcaatccattgaagcggttccgtttctctacgatggcaaggaaaatagtgtctgaagaccaggagaaaaaagagcttctaaagatgcttggtcgccttgaaagcatcatttcagaggagtttgttatgtcactcagaagctaccctcgtatagttcgacagccttattgcagctacctgttgttggagaactgcatgtttggccgtcaagcagaacaagagaggatcatcagcttcttgctagaaccacatcgtgctggcgcggaaggtgttgcagtgcttccgataattggtcctgcaagagttggcaagagcactcttgttgagaatgtctgccatgatgaaagggtgcgtaaatacttcttcacgattgttttctattacaccggtagtactgagggtgcagttgcagataccggtgtcatcaaacatcaaaatcctgcctcaactaaacaatcactagtagtaattgaacttgttgatgacatggatgatgaaacatggagaagaatattgtctagtctgagaggagacaacatagcggcgcctgtgagtaaaatcataataacaagtcaatcaaataagatagcaacttttggaacaaccgaaacacttcagttagatatgctcccaaaAgaagctttttggtatttcttgaaaacaattgcatttggcagcactaatcctgaagaggagccgaagctaacatccatatgtatggagatcgcggcccaggccaatggagcattcctacatgcaaacattattggtggcatactcagatctaattttagtgttcaattctggtacaaggttctcaaacgcatgaaaattatcacaaactggcatttccgtctactaggtgaacatccaagggacatgtttgcagctaaaagtgggcggactatagtttggtttagtaaattaaatcggtttgtaccagtgacatacaatgaagcaagttcctctcggctcaatgatcatcccacaagcaatgcttttatagccaaaaagggccagcttgatgagaacattgatgccctggaatggcaatctagcattcctccatactataaataccgaacgcgttacgcaatgattgaacaaccgaatacgttatctacagggaagcgatcccgctctctctcagaaggatgcactctgaaactgagaactgagtttgagctgacatttctgccagcttcatgtgcgtcagccgcactgacaacagcgaaaccgttggcgccgtggtatcatcgtcgcgatggacccccgaagaacctgaggctatcgatcctcgccgtcgccggaaaacaagaccgtcactgccacaattcggctgtcgtcatcctctag
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| Protein seq | METFLSAVLADLLSRSISFVIDRYCQQQQGVEENLQQLQRMLLRIQTVVEEANGRRITNQAMLLQLKTMRNVMYRGYYFLDNFRYRIALGHAPDEVDDHSLASFPFNPLKRFRFSTMARKIVSEDQEKKELLKMLGRLESIISEEFVMSLRSYPRIVRQPYCSYLLLENCMFGRQAEQERIISFLLEPHRAGAEGVAVLPIIGPARVGKSTLVENVCHDERVRKYFFTIVFYYTGSTEGAVADTGVIKHQNPASTKQSLVVIELVDDMDDETWRRILSSLRGDNIAAPVSKIIITSQSNKIATFGTTETLQLDMLPKEAFWYFLKTIAFGSTNPEEEPKLTSICMEIAAQANGAFLHANIIGGILRSNFSVQFWYKVLKRMKIITNWHFRLLGEHPRDMFAAKSGRTIVWFSKLNRFVPVTYNEASSSRLNDHPTSNAFIAKKGQLDENIDALEWQSSIPPYYKYRTRYAMIEQPNTLSTGKRSRSLSEGCTLKLRTEFELTFLPASCASAALTTAKPLAPWYHRRDGPPKNLRLSILAVAGKQDRHCHNSAVVIL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0627900 | RBH | 0.292213 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g41760 | RBH | 0.197609 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0627900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025850 | RBH | 0.0 | 0.000000 | 0.203228 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025980 | RBH | 0.076879 | 0.0 | 0.572785 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025800 | RBH | 0.0 | 0.0 | 0.396228 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0025400 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025510 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0407700 | RBH | 0.359406 | 1.0741725 | 0.632161 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025400 | RBH | 0.0 | 0.0 | 0.293800 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0436300 | RBH | 0.321953 | 1.0772605 | 1.37528 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0025600 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0025380 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0025720 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0019800 | RBH | 0.101584 | 0.265754 | 0.249739 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0025180 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G025790 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0025640 | RBH | 0.0 | 2.365678 | 1.119182 |
