Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0023830 | OGI:02067340 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:24959598-24968003 | ||||||||
| Gene Symbol | OsbHLH110 | ||||||||||
| DNA seq | tagccccaccacctccaccacctcacctcccccttcccttcccttcccctcttctctcctctactagctatagtataggccgcccccgtcgttttgttaattttcacgccgaaatttccacccacaccacgcgccgcctgcctacctgcgcctgcgcgagctgcagatcgatcgacgagaggccgcgtctcggtcgcggggggtggagttgatcgatcgatccaaggaggggtatgatgaggaggtttctgccggtggggggaggaggaggaggaggggtggagccgtcgtcgtcgtcgacgacgccgcagcgaggggaggcggaggcggcggggctgcggttcggtgggggggacatctcgctgggcccgcacggcggcggcggcggcggcggcggagggggcggagggcatgggcatcagctgcaggacgggagcgtggacttgctggcgcggcacagcagctcgccggccggattcttctccaacctcatggccagcaacggtaagatcgatcgatcgattgcgctagccaacccattgttcgattttatttgttcatccgtgttcaatttggcgtcgcgtgcgtgcatagctagcccatcgtgtataggcgtatagctaattggttaggactactcagagtcacggatcttcaatttctagcttaattctgtcaggagagaacggctagctgtgcaaatgtcaacctcgtctttgccttcacatgccccatctctttctcgtcacacacgcacacgatcgaagtatcgatcgatcacatgaattgctgttctaggcttctagcaacaaccaccaaaaaaaacgaattccatcgatattattgttaatggtgttctttctctctcagtgtttcctccacactgtttcagattcttcccatacttatccgaaaccaaacgggtttgatcaatcgatcgatctctgtctacctggttcttaacttctatgcaactcccatcactactaactgccaaagccactagctcgctcggcgacgacgaaatgctgatgagctcgcgctatctagctaagctcgatcccttttgcaagttgcttctgcggcgcgcgcgtgaatcgatcatcgcgtgcgacttttcaccggtcctaactggttttttttttgggttaaaaagtggttttcgctaaggccgtcatgggaggagctagtgtgtatatcagactactatcagtatgcgttgtggatatccatggatgtgttagtctgcggctttttgctacgtgagttgccataaatagtatcatggagatcctctgtgcccatttttctactcagagccattagccataggctcctatatgtggttagtaacttttgtgtgataataatgcatgtttgccacagttagggtcaatatatatatatatatatatatatatatatatatatatatatatatatatatatatataagctgttaattaaggatccaccatgagatgttatatccatgagattatgcggcttaattgttttcgtgataatgtaatatgagttcaagtttttaaggcatatgttattacgaggagtgcacaaatttggctcggcgtgtaagaaggacgatggaaaactatgggctacacaggaggcgggttttctcaagtagggtatcatcgatagtgaaatgtggggtctagggttttgaatacaccgcttttattctttttacgtacgctttttataatcgagtgtctctagattgtcttattttctattgcaacttgctataaatggcttagtttttttgccacttgcacctggtgtccctctctctcatttgatccattattttcagttgcaaagtcattgcgcatgacaatccattcttcactacaatagtagacatggggaaaaaaaacaatttgaagctatagtggagagagcaaagagatagatgtttttttttctaatttaatttgttcataataagactagaaaaccatgcattcatcttccaggatttgcacaaatatgtacatttgattaattagtatcaccattcaccaacctagctagctaaaacaagctctttttaaaaatgtttttggcaagtattctcatttcatataaaggatacctatatgcacctcatttgatgaaaatcattgcaaaattatgcaccatcattatttattccatgagtattaaattaattctgcgtcacaaatattcaacgttttagagcatacagagataataaccctttaatgaaaacttcaaaatatcatttattcaaaaattaggaataagtgtgtcaatatctttttgaaatgcagatcaatatgaacatagagttatgttataattaattttcacactacatatataccaacatctaaaatggccttttgaccgagcaacctgtatacaacaattggtaaggataaaaatagtaccagtagaaatgtcgaaatccacatataagtactacaccagtactaaatttagtaattatactttgatcgaggtaggaatagcctcgagtaaagtttaaaagagtcaaatgtctttcagtggagcccatgtagcagcatttctttcaatgcggcagccagttgcactctagattctgctctaggtagaccaacttgcgcatatatgatcaattaattagtatcaagacagcaagcacaattaaattaccagtggatcttagtgcctcgaaccctagccaaggcaaaaagaaaaagatgagggcatttgattaatttgtggattaattaatttttgatcaatggattaattagggcgccacttgccttaatgtaaggcggggaccacgtgtgtgtcgccgcaacttggcctgcggggtgggccccccggtttgtccaggttcagctcctctgctgatggcctgacggtgacgtcacggtcttgcctcgctaaagatagtgacctacggtgcgttgagatggcatgcgtgattgctcggcttcttgatttggcgtttgctttctctcttggctgcgtctatgtcagcgtgcgaggcttgctcatatgcacgggccggcacgcggcatgcacgtgctagcgtgtccggtaggcttcaatataccatctgttcgcatcgtagtacaaaaaaaccgaagaaaccatccgattcaatgaagaaaattatccatattcttaggttgttgtattttgaaatggagagagtacttgttcttattaatttgaggagaataagatcgatcccctggaagtagtcgtaggtacgttcaaaataaatataaaataaatatagtgtaatgtgtgcatgtcagttcactggtcagaaaataattttcgcgtcattcgcagcaatttgactagaaatttacattgtggaataaaaaaatcgtggggccaaaatttcaatgtttttaatgaaaattttaggctagatcttgggattttcTtttttaacacagtacagacacaaacatgcatatatacacatgcatactcaacgctctgaacatacacgcacaccctatcactatataagcacctttaaagaggaccgtcatgaagtcgtcacagacactgtcaacatattttaaaagttgataaccaaccattttgctaagggcctgtttagtttgcgaaaagaaacattttgggtgtcatatcggatgtttgaccggatgtcggaagggtttttcagatacgaatgaaaaaaataatttcataacttgcatggaaactgcgagacgaatcttttaagcctaattaatccgtcattagcacatgtgggttactgtagcacttatggctaatcatggattaattaggctcaaaagattcgtctcgcgatttcctccctaactgtgcaattagatttttcatttatttatagagagaatcccttatataccactgaaaattggtctaatcccttatatgccattgaaaattagttcttcccttatatgccattgatccaaatttgcacactctctcacgccactcccgtcagttgactatgtgttgaccgttaattcttaaggaaaaaagacgtatttacccttctgagtatagggcatgcctaacaactcagagagggcaatatgtcttttttacttgagagttaacggtcaacacacggtcaactgacggtagtgacatgagagggtacgcaaatttagaccaatggcatataagggaggagccaatttttagtggcatataagggatcagatcaatttttagtggcatatgagggattatctcttatctatatttaatgcttcatgcatgtgttcacaaattcgatgtgatgttttttgaaaaaaaatttagggaactaaacggggcctaagttaaaaaattcaaatactttttgggcttctattgggacccaatagtaatccaaaatttgaaacctttgatttgaatagcgatgtaactattgggcatacaaggtttgaaaaaatggttacggccggattgctaactttgatattattttcatccaaaacgaccaatactgaattggagggagtagaaattaagttgcaacacgtaagtacatgtttgacgatgtgcttataagtaactagtaatagctagtaaagatgaacgcaaatgcaaacactaattttaattgtttttgtctctttcatatatataatattcgtctcactaacgatctactactctttctaattaaggtggtcgtttgaactcatctttctgtaagtttcatattcttaatacttgtgaccactcaaaatagaccttacattttaaaatggatggagtacaactttctggaacatatggttctagtcacgagaatattcctctcatatactccctccgtttctaaatattcgatgccgttgacttttttaaacatgtttgaccgttcgtcttattcaaaaattttaaataagtattatttttttcctatcatttgattcattgttaaatatacttttatgtatacatatagttttatatatttcacaaaaatttttgaataagatgaatggtcaaacatgtgctaaaaagttaacggtgtaaaatatttagaaacggaggaagtatatcctgtatctatcgtgctattttgtgctggggcaactcggccgggccacttttaatttcgtagtgctagcttgtaaTtttttttaattagttagtagtgcatagtgttgatgaatggtaattgttgtggtttaagttatgtttaactataataaccggtgattagtcaagtttaatttgtacatggatttcaaatagaaatttggtagtgtttaattatgaaaatatttatagaaccactatgcatatataacattacacctgcagttaaacacacatttgaacatgagaatcaaacctaaccttaattacgtgcacctactacagaaaaatattgtagaatcaaatacacactactccattcaaccttggagaagcaagtttgaacatcccatcacatctaggttaaacttattgctcaacacgtgtacctatagagctagctctaacggtatgctaataccgtaaactattgtttacttgtcacacttggcagttttcaactagcgtttgggtaacagtagctctttctctcacacacacagttaatttaactaattagcgatcattagttaatttccgtgcttgctacttggcaataaactaagcaggctttccaggctcaaaaggcgggggaggcagcggagccgaagcccaccaccacccttccatggccggcagcggcagcggcagcagcagcggcgggaggaagatgaagtcccagctgagcttcacggccgggccgccgcacctctcgcacatcgcggaggacggcgccttccccgaccgcgccggcgccgaggcctccgtgccccgcaccttctccgccggcggcagcagcggcggcggcgggttctccatcgtcgggccgtgggaggagtccagggacatcatctccaccctcggcgggtacgagtcccaggtaaagattgctcggcaaatttgattgctagggctaccttcattgaatcattgtacactacaaggcttcttgatctcttcatcccttgtttatatttactaacattcataagaatttggacacatgtatgaaacacatacatttatacatgtatgaatctattcaaaactcaaaacaacttataataattaatgtaaaacagaggaagaagtagtagctagctttgctgtgtttgtgATatatatatatatatatatatatatcgcgatgtgttcttgatttcttgggcgtgttggaaatgggggcagttcggcggcatggcgagcacgtcggcgctggagatggccggcatggacaggtacctgcagctgcagcatgaccaggtgccgttcaaagtgcgggccaagcgcggctgcgcgacgcaccccaggagcatcgcggagagggtacgtacgcaatatcatgatcaaaacgcctctatatttgcttttgctttctcttcagatcttgacacatgagcatgtacgtcggtgtgatcgatgcgcgtccgtaggaacggaggacgagaattagcgagaagctcaggaagctgcaggagctggtgcccaacatggacaaggtggccattacgatttgaactttgcataatgttcatacctatatttacatgatatttgaggaagaaaggaacatccctagctaagtattttcttttaaaaaaaaactttccacatttcttgtgccattagcacacagattcatgtttctcgccttaataatagacatggcaaatgcacacgcattcacccatgagtgtgcactgtgaagtgtcccttaacacatgctcaacaaattcatggacaccaagcgcaaaatcataacctaatagaatttctagaaaaagcgtatccatgtttgtgtagttaaattctataggcactgagattagagctttggtgcatgacagccacaactccaacaccataccaaacatgctttctcaacaaattcatgattattgtatatagatgaaaggggtcgtacgttctctcatctagttctagctaatattaattagcggtaacattttttgcgcatgaataatgcaaccaattgagtaattaattatgttcgtgttgcaacagcaaacaagcacagcggacatgttggaccttgcagttgagcacatcaagggtctgcagagccagctgcaggtacgcatatttgaggatttcttcacaaggactaatcccgcaagtaggggataagattgaaaattcacatttacattttttttcgtgaatgcgcaaaaggcgcgcccatcaatatattaaaaggaaaagaggttttgttacataacgcaaccagctagacgagcctatgcgaaggaaaggaagaaacgaaaaaaaaccgacattgtctatcattcccttttgttctaatcaatttgtcttatttaaatcttttccctctcaagtgatgtatgggctggtaattaatacacctctcaaggctgagagataacatattttctatttagatttgttagcgaaatagccgtgctttgctacaaataactacaaattatatgcatgctagtattgtttggaacaaattaactacgaggtgtgttagaagatatattcatccctggggatctctttacactataaactttgtattttagagatgaaataagatagaagaaatatatatataagaactagtttgtaatgctgaagcatattgatcggataagtagttgataaaagtatatagctagcatattcactggtactatcattaattgtcttcgtctacaaaagtatagatcacatttgccattataatggttatatacttggttagaactcgtacgtgttgccttttttggttgttcatattttcattttttagccgaggctccaaaacagaagcgatataaacttttgaattttgtgtcgtctttctgcgtgcaggctctgaagcatgagcaggagaagtgcacttgctgcagcaggccttgattgatgaagcagtgagacggcgaaactgaaaggtatctatccttagtttggaaccctgattacggatgatactttcatatttccttgagagtaacgcatgcgtggatgcatgaaccaattaatgtcagtgacacaatccaaatcgaccgtgagcattttgtcgaaatgtgtaaattgttagataggacatggcaagggacatgtatatgcatgcctgcatgcatgagtgagtgcatggagctagctactccgaaatagcggggtgcagccattgtgatcccttaattaattctcgatccactgatgattaattagcttgtaattctgtctttaaaccTtttttttaatgacgaggggagagaaaaagaaaatgaaattttggtc
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| CDS seq | atgatgaggaggtttctgccggtggggggaggaggaggaggaggggtggagccgtcgtcgtcgtcgacgacgccgcagcgaggggaggcggaggcggcggggctgcggttcggtgggggggacatctcgctgggcccgcacggcggcggcggcggcggcggcggagggggcggagggcatgggcatcagctgcaggacgggagcgtggacttgctggcgcggcacagcagctcgccggccggattcttctccaacctcatggccagcaacggctttccaggctcaaaaggcgggggaggcagcggagccgaagcccaccaccacccttccatggccggcagcggcagcggcagcagcagcggcgggaggaagatgaagtcccagctgagcttcacggccgggccgccgcacctctcgcacatcgcggaggacggcgccttccccgaccgcgccggcgccgaggcctccgtgccccgcaccttctccgccggcggcagcagcggcggcggcgggttctccatcgtcgggccgtgggaggagtccagggacatcatctccaccctcggcggcacgtcggcgctggagatggccggcatggacaggtacctgcagctgcagcatgaccaggtgccgttcaaagtgcgggccaagcgcggctgcgcgacgcaccccaggagcatcgcggagagggaacggaggacgagaattagcgagaagctcaggaagctgcaggagctggtgcccaacatggacaagcaaacaagcacagcggacatgttggaccttgcagttgagcacatcaagggtctgcagagccagctgcaggctctgaagcatgagcaggagaagtgcacttgctgcagcaggccttga
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| Protein seq | MMRRFLPVGGGGGGGVEPSSSSTTPQRGEAEAAGLRFGGGDISLGPHGGGGGGGGGGGGHGHQLQDGSVDLLARHSSSPAGFFSNLMASNGFPGSKGGGGSGAEAHHHPSMAGSGSGSSSGGRKMKSQLSFTAGPPHLSHIAEDGAFPDRAGAEASVPRTFSAGGSSGGGGFSIVGPWEESRDIISTLGGTSALEMAGMDRYLQLQHDQVPFKVRAKRGCATHPRSIAERERRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALKHEQEKCTCCSRP |
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| Function | Transcription factor bHLH128 [UniProtKB/Swiss-Prot:Q8H102] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0023830 | OsLiXu_02g0023830.01 | Chr02 | 24959598 | 24968003 | + | NAM | ||
| CDS seq | atgatgaggaggtttctgccggtggggggaggaggaggaggaggggtggagccgtcgtcgtcgtcgacgacgccgcagcgaggggaggcggaggcggcggggctgcggttcggtgggggggacatctcgctgggcccgcacggcggcggcggcggcggcggcggagggggcggagggcatgggcatcagctgcaggacgggagcgtggacttgctggcgcggcacagcagctcgccggccggattcttctccaacctcatggccagcaacggctttccaggctcaaaaggcgggggaggcagcggagccgaagcccaccaccacccttccatggccggcagcggcagcggcagcagcagcggcgggaggaagatgaagtcccagctgagcttcacggccgggccgccgcacctctcgcacatcgcggaggacggcgccttccccgaccgcgccggcgccgaggcctccgtgccccgcaccttctccgccggcggcagcagcggcggcggcgggttctccatcgtcgggccgtgggaggagtccagggacatcatctccaccctcggcggcacgtcggcgctggagatggccggcatggacaggtacctgcagctgcagcatgaccaggtgccgttcaaagtgcgggccaagcgcggctgcgcgacgcaccccaggagcatcgcggagagggaacggaggacgagaattagcgagaagctcaggaagctgcaggagctggtgcccaacatggacaagcaaacaagcacagcggacatgttggaccttgcagttgagcacatcaagggtctgcagagccagctgcaggctctgaagcatgagcaggagaagtgcacttgctgcagcaggccttga
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| Protein seq | MMRRFLPVGGGGGGGVEPSSSSTTPQRGEAEAAGLRFGGGDISLGPHGGGGGGGGGGGGHGHQLQDGSVDLLARHSSSPAGFFSNLMASNGFPGSKGGGGSGAEAHHHPSMAGSGSGSSSGGRKMKSQLSFTAGPPHLSHIAEDGAFPDRAGAEASVPRTFSAGGSSGGGGFSIVGPWEESRDIISTLGGTSALEMAGMDRYLQLQHDQVPFKVRAKRGCATHPRSIAERERRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALKHEQEKCTCCSRP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.123709 | 1.057639 | 0.231755 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0603600 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g39140 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0603600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0023970 | RBH | 0.051078 | 0.779802 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0024160 | RBH | 0.0 | 13.190582 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0024120 | RBH | 0.0 | 6.002590 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0023770 | RBH | 0.0 | 0.294505 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0023720 | RBH | 0.000000 | 10.789531 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0385900 | RBH | 3.345306 | 43.9854585 | 3.7851235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0023530 | RBH | 0.053280 | 0.866841 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0413700 | RBH | 4.878074 | 37.571157 | 1.896783 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0023820 | RBH | 0.054171 | 0.355776 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0023770 | RBH | 0.0 | 16.237030 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0024070 | RBH | 0.0 | 28.241161 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0018070 | RBH | 0.0 | 0.974603 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0023540 | RBH | 0.078873 | 2.136442 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G023960 | RBH | 0.208489 | 2.229949 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0023840 | RBH | 0.0 | 33.299492 | 0.0 |
