Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0023100 | OGI:02065820 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:24523126-24526831 | ||||||||
| Gene Symbol | NAC50, ONAC050, ONAC50 | ||||||||||
| DNA seq | tggctcaaccatgggcaatagaaatgcatgggttctcatgatcatcttttaggaggaaccacgaaatatgcaagtttgtgacaaagagagtcgaactaagacatacctacacacctacatgctctcccatagagttaaatagctggaggtttccaccattacatggccccgaacaagccatcacataacatttcctttccagttttgaggcaaaatatgaggttcagatgaccctatctgagacggtttgatggttcagcacgacttcagctatgcagtttgatcccacaaaaagttcctgcagttcttcgccttacttcgaattctctatcgacctagatgctatccagccagttgccaatgctctcctgtgatccaaactgcaaatcctgtcacaacacagaaaaaacgaggcaggatcagaattggcagacatatgggcaccaagagagagccacgggataaacttacagcaagctgaaaatctggaggtgttccaaggtctacattgtagagatcaggtagtccatacaccgcattcaggttcctgtcaagaatctcattcccgccttgggacagaattgggcggtcagaaggaagcaacgtttcatgatagaaggaatccagaacttcatgacagcgcagggattcatccaagttaggacaggcctgaactgcttccctcgcggcctgggtttctccagcgcaccacgcaggattcccagcatcatccttcaggctaacaataggtatgttagactcctcttcgtcctataataattcgcaaatcaaagaacaaaattaatattttcaaatgatgaacaaatacagcaaaacaaaatatcatcgatgcttagatatatgtcatttttcatcatctctcaaaagggaagcatacaactttccagaatgttgaaagtagtggtttgatactccattgaaaacaataatatacaaaactaaaataacctaaggattacagttatagttcgagttatttttagtgatccgttgagtgcagatctgaaaccagattatgaaatgtttcctgcttcagtggttacccaaattctgaccaaattggctttcaattcttcatttgcatcaatgataacagaagtaatgtacattacctggtcctccaagatgggatcgtaattttctgtttcacatggactgttttttaagcgacatggctgtggggtgtttgactttggagtttttggaccaacccttgcagcaaatgcatcagattcttcatcagcatttcctgtttcaaacttgtctatctgttttccatgcaactggtaggagattttggagacaacaagctccccatccttttcatcttcttctgccccaagatggtactgatgcatcacccagttagccttatcaggtttggcacctctttgtgaactcttgtacagaaccattattttcttccaaccttttgtaacccccttttcaactatggctttggatttccctgtcttgtgccatctcacatgttcaacagaaacaacatgatcacagttactgatctttcgacgcttgcgctgaccacaaccatatgcatttgaaactctatggaagaaatgaccactggttccatctttcttcatacctgttggccaaaaataagattttggtaaataacatggataaaccaataacttcgaaaacagccatatgccatcacaagacattaagtccataccaggaagattttccggatgtgaatagcatatcccttcatcattatctatagtcggaataaattcatcaatgaatgtatgtggctttgaaccccccaggccaatcttttgttccaaatgttcaagcaattccaaatcagatggatcaaacttgacaccagcaggcagcccaggccactgtatagcaacctgcatagaatgaaattcagcaaaatattgattagaacacataacttctattcaatgtgagctgaaagctaaagttacacttcaactgcttttacacatgcagagattctgtgattaaattctgggatgcattatattccaaagcccaatgtcaataggctctgaaactgagcaaatgatgcctatttctgccattaagataacccagtcagctcatacctcttttctcatcagcaataacctacctttttgcaactattggtaacaaataacaatcaacagattaatcatgtaccagaagcaggtttcagaaaatgggataccccaaaatttagaggaatatcgattttccaaagtatgaacttacaaaagtgtatagttgacaacaaatattgtagactaatacttacatcactgttatcaataacatgtttgcagtttggacattccatctgtgcttctgcacccaattcacttattgggcgactagagcaatgaggtgcatttcttattttcttagcaactcccctaccagttataagccaagacctgcagcaaaacaagcatgttggcatttgttactaaagtaacttgcaacgttagaataaaacgatgtatatgcgcatgacttaggggagttatacttgtgcataatcgattgaccgttcagcattgcttgttagtgaactatgtatagcaagatgagtactatatcattttgatgcccttttctaaatgaaaaccttgattgaaaagttttttttttttggtgtgtgtgtgtgggggggggggtgcctgagctgaagtcgcataaccatgggttgaacaatgtagtacaatggtgatacaattacagacagtaacgctttgtgttccatgtaccaaatatgcagagcaatttcaagcaaagaagttaacataattcgaaccataacaaaccgaattccacactgaacgcaaacaaatttgtgatatagctaaatttcagctccatacactgaccacattgcggtatgcactctgacagagaccacaaatacaagtgcagctgaccattaacctggcatgcatagcctagctcacttgtggttgtgggtaggtaagagtgtgtgccacctagatttgattcctctttggctcgatttcggtgcgtattaatttcttaattaaaatgatactaatcccaccaagattttctcatttcttcagtaaaattctgttcaagcaaccgtgagctgtgagcccaagtgatatcctacatcaacttaaatcatactactacttatttcaagtactactactatgtgaggagtatgaaccaaagagacgcgtcattgaaccattaaaaaccatccacccccatccgggtaacgatcagacgagccctaaaaacaacagcagaaaaatgggtgaaggaataggggaaagaaaatatcactagtcacctcgccatggcggcgcgggcggtgcgtcctgaccccaaccacgatcggcggcgagtccgcgaccgcgagcgagacgcggcaccaccggaccaccccctcccgaaccaagcaggctgctcctcctccctccgaacggcgaccaatgcagcggcggcggcggcggcgatcgatcgatcggcgcggggaggggaggatgcgccccccagcgacaccgcgcctccgcccttatccccctctctattgaaccccccgggattccggggcgctgcctgccgccgcaatggcggtttgctgctgcttttgcctttgctccgcttcctccttccttcgcaagccacacgcgctccccaagag
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| CDS seq | atggcgaggtcttggcttataactggtaggggagttgctaagaaaataagaaatgcacctcattgctctagtcgcccaataagtgaattgggtgcagaagcacagatggaatgtccaaactgcaaacatgttattgataacagtgatgttgctatacagtggcctgggctgcctgctggtgtcaagtttgatccatctgatttggaattgcttgaacatttggaacaaaagattggcctggggggttcaaagccacatacattcattgatgaatttattccgactatagataatgatgaagggatatgctattcacatccggaaaatcttcctggtatgaagaaagatggaaccagtggtcatttcttccatagagtttcaaatgcatatggttgtggtcagcgcaagcgtcgaaagatcagtaactgtgatcatgttgtttctgttgaacatgtgagatggcacaagacagggaaatccaaagccatagttgaaaagggggttacaaaaggttggaagaaaataatggttctgtacaagagttcacaaagaggtgccaaacctgataaggctaactgggtgatgcatcagtaccatcttggggcagaagaagatgaaaaggatggggagcttgttgtctccaaaatctcctaccagttgcatggaaaacagatagacaagtttgaaacaggaaatgctgatgaagaatctgatgcatttgctgcaagggttggtccaaaaactccaaagtcaaacaccccacagccatgtcgcttaaaaaacagtccatgtgaaacagaaaattacgatcccatcttggaggaccaggacgaagaggagtctaacatacctattgttagcctgaaggatgatgctgggaatcctgcgtggtgcgctggagaaacccaggccgcgagggaagcagttcaggcctgtcctaacttggatgaatccctgcgctgtcatgaagttctggattccttctatcatgaaacgttgcttccttctgaccgcccaattctgtcccaaggcgggaatgagattcttgacaggaacctgaatgcggtgtatggactacctgatctctacaatgtagaccttggaacacctccagattttcagcttgctgatttgcagtttggatcacaggagagcattggcaactggctggatagcatctag
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| Protein seq | MARSWLITGRGVAKKIRNAPHCSSRPISELGAEAQMECPNCKHVIDNSDVAIQWPGLPAGVKFDPSDLELLEHLEQKIGLGGSKPHTFIDEFIPTIDNDEGICYSHPENLPGMKKDGTSGHFFHRVSNAYGCGQRKRRKISNCDHVVSVEHVRWHKTGKSKAIVEKGVTKGWKKIMVLYKSSQRGAKPDKANWVMHQYHLGAEEDEKDGELVVSKISYQLHGKQIDKFETGNADEESDAFAARVGPKTPKSNTPQPCRLKNSPCETENYDPILEDQDEEESNIPIVSLKDDAGNPAWCAGETQAAREAVQACPNLDESLRCHEVLDSFYHETLLPSDRPILSQGGNEILDRNLNAVYGLPDLYNVDLGTPPDFQLADLQFGSQESIGNWLDSI |
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| Function | SUPPRESSOR OF GAMMA RESPONSE 1 [UniProtKB/Swiss-Prot:Q6NQK2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0023100 | OsLiXu_02g0023100.01 | Chr02 | 24523126 | 24526831 | - | NAM | ||
| CDS seq | atggcgaggtcttggcttataactggtaggggagttgctaagaaaataagaaatgcacctcattgctctagtcgcccaataagtgaattgggtgcagaagcacagatggaatgtccaaactgcaaacatgttattgataacagtgatgttgctatacagtggcctgggctgcctgctggtgtcaagtttgatccatctgatttggaattgcttgaacatttggaacaaaagattggcctggggggttcaaagccacatacattcattgatgaatttattccgactatagataatgatgaagggatatgctattcacatccggaaaatcttcctggtatgaagaaagatggaaccagtggtcatttcttccatagagtttcaaatgcatatggttgtggtcagcgcaagcgtcgaaagatcagtaactgtgatcatgttgtttctgttgaacatgtgagatggcacaagacagggaaatccaaagccatagttgaaaagggggttacaaaaggttggaagaaaataatggttctgtacaagagttcacaaagaggtgccaaacctgataaggctaactgggtgatgcatcagtaccatcttggggcagaagaagatgaaaaggatggggagcttgttgtctccaaaatctcctaccagttgcatggaaaacagatagacaagtttgaaacaggaaatgctgatgaagaatctgatgcatttgctgcaagggttggtccaaaaactccaaagtcaaacaccccacagccatgtcgcttaaaaaacagtccatgtgaaacagaaaattacgatcccatcttggaggaccaggacgaagaggagtctaacatacctattgttagcctgaaggatgatgctgggaatcctgcgtggtgcgctggagaaacccaggccgcgagggaagcagttcaggcctgtcctaacttggatgaatccctgcgctgtcatgaagttctggattccttctatcatgaaacgttgcttccttctgaccgcccaattctgtcccaaggcgggaatgagattcttgacaggaacctgaatgcggtgtatggactacctgatctctacaatgtagaccttggaacacctccagattttcagcttgctgatttgcagtttggatcacaggagagcattggcaactggctggatagcatctag
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| Protein seq | MARSWLITGRGVAKKIRNAPHCSSRPISELGAEAQMECPNCKHVIDNSDVAIQWPGLPAGVKFDPSDLELLEHLEQKIGLGGSKPHTFIDEFIPTIDNDEGICYSHPENLPGMKKDGTSGHFFHRVSNAYGCGQRKRRKISNCDHVVSVEHVRWHKTGKSKAIVEKGVTKGWKKIMVLYKSSQRGAKPDKANWVMHQYHLGAEEDEKDGELVVSKISYQLHGKQIDKFETGNADEESDAFAARVGPKTPKSNTPQPCRLKNSPCETENYDPILEDQDEEESNIPIVSLKDDAGNPAWCAGETQAAREAVQACPNLDESLRCHEVLDSFYHETLLPSDRPILSQGGNEILDRNLNAVYGLPDLYNVDLGTPPDFQLADLQFGSQESIGNWLDSI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.768424 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0594800 | RBH | 0.131889 | 0.128086 | 0.527974 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g38130 | RBH | 0.088328 | 0.085317 | 0.134597 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0594800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0023360 | RBH | 0.0 | 4.220998 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0023470 | RBH | 0.068956 | 0.0 | 0.512620 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0023440 | RBH | 0.0 | 4.188465 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0023150 | RBH | 0.0 | 0.142480 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0023040 | RBH | 0.000000 | 3.653239 | 0.609246 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0377600 | RBH | 0.378925 | 1.242362 | 1.1026505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0022820 | RBH | 0.0 | 0.083922 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0405600 | RBH | 0.599306 | 1.9229275 | 2.455024 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0023220 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0023050 | RBH | 0.097907 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0023390 | RBH | 0.000000 | 3.299508 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0017230 | RBH | 0.228802 | 0.206516 | 0.157575 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0022910 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G023350 | RBH | 0.0 | 0.477417 | 0.190468 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0023210 | RBH | 0.0 | 0.000000 | 0.0 |
