Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0022450 | OGI:02063970 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:23902240-23904890 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtaccttccagagagcaaatagagcgtgaactcattttgtgtgtgagagagtatgttggatgatccatttcacatcacttggtgcaccttgtgcttgaacagcacctaatgagatgccagtttgcacagctgatggggatttcgcttcgagtgatgaatgaaacttgtgtggcatattattccctgtcaggtaattcctcagtcagcattgcataggtttgatgacttggtctgcagttcatacgttctaacatgataatcatttcacgggatatatctgagtgacctttttttatcaggccatcaataatcactttccacacaatctcatcgggactatagtctttccatctagaattcatgaatatttctttagccttatctgtttgtccttcacaaataagcccagaaagcagatgttggtaggacatcaagtgtggtataaaaccatgttgaatcatagagcaaaccaacacccatgcatccaaataccttttggatttgcaaaaacaagtaacgagagcagtatagatgtcttcattcagagatatactatcttctttcataagagaaactaacgatgtcgcctcttccgttcttccatcttcagaaaacccctctagaatggaagaataagttcctgaattaggaagaaattcgttcttcttcattacatcaaacaacccaaagacatcagtaagctctatggctttccacacaccagctggggtcaaaggcaacacatcctccactaatctcatgcgtacaagatgtctaagcaagataaaataagtaaactggtttggcacagaagcaacacttgtcatttgtttcaagattgagactgcatgatctgtctgtccaatacttgcatgtccatccatcagagtattgtatgccattgtatctacagtgaccccatttttgctcatctccatcaaaacattttctgcttcatttagtcttccttcaatgcagtaagcacgcatagacgttgtataagtgactacatcaggattgcaacccgatgaaaccatttcgccccaggttctcgcaaccaatccatagtttctctcctttaaaagcttatgaatcacaattgtataattgactgttgagggcttcacatccttttgtagcatctcccctataaaggacagaccttcttgtgaccccttcatcttgcataggtgttcaataaatgaactgtatgtgtaagtatcgggtgtgcaacctgcagaaaccatcttttccaaaaatttccatgcaatgtcaactttaccagacttgcataacccatttatcaaggaattgaatgtcacggcattaggttttatgcctctagtttctagactatcAaaaagggagcaagcttgatcagttcttccatccttgcagagagcattgatcaacgcattatatgtgtactgatcagcaattaaaccatctccttccatcaaacgtagcaatcggaaagcactctctatatgcccatcaatgcattggccccgaatcaacaaattatatgtcacagcatctgggttgactccacatactctcatcttgttcaacaaagccattgccttgtgcacctttccttcattacagaacccttggaccaatgcattatatgtccacacattcggcttgcaccccctcaacttcatcaactccaacaccctcaatgcatcgctcatccttccctccttacaataggcatttatcactgcagtgcatgtcacaacacacggtgccaatcccttttcaaacatctcctgaagcatttcctcagcttccttggccttacgctcccaacaccggaaatcaaccacagctgcataagcacgggtgcttggccgccaccccaattccttcattctacgcaacatgagaagcccctcctccccccgccccgccttacacaaccccttcactaaggctgcatacatgtgcatgtctggctggtccatctccccgaacaactccactgcctcgtcaatcctccccgtctcacagaacccctcaatcagcgcggcgtaagagaccacgtcctgggcgaaccctctcaggggcattttgtcgaacaggtcgcgggcaacgtcgacctggttggtgcggcaataccctacgatgagggagttgaacgtgtaggcgtcggggcgccagccggagcggaccatgaggctgagataccgcagggcgctggcgaggtcggcgcggcggcagagggagcggatgacggcgttgtaggtgggggcggccggcgccggcggggcgtggcggtgcatgtgggcgaagaggcggagggcgagcggcgcgagggcgaagcgggagaggtgggcgaggagggaggcgaaggggcggtcgaagagcgggcggagcggcggaggcgagagggagtggaggcggaggacgaccgggagcgcgacggcgaggaggtggcgggacggcgcggccgccctggccgccgcggcggcgaggcggacggggagcggggcggggagcgactcgggcagggacggcgcgagcagggcggggaggcggggcagggaagggttgaggaaccagtctggcgaggtgaggacggcggcgaggtgggcgaggagcgccgccgggttggtggagcgcggcaaggctggagacgagcccat
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| CDS seq | atgggctcgtctccagccttgccgcgctccaccaacccggcggcgctcctcgcccacctcgccgccgtcctcacctcgccagactggttcctcaacccttccctgccccgcctccccgccctgctcgcgccgtccctgcccgagtcgctccccgccccgctccccgtccgcctcgccgccgcggcggccagggcggccgcgccgtcccgccacctcctcgccgtcgcgctcccggtcgtcctccgcctccactccctctcgcctccgccgctccgcccgctcttcgaccgccccttcgcctccctcctcgcccacctctcccgcttcgccctcgcgccgctcgccctccgcctcttcgcccacatgcaccgccacgccccgccggcgccggccgcccccacctacaacgccgtcatccgctccctctgccgccgcgccgacctcgccagcgccctgcggtatctcagcctcatggtccgctccggctggcgccccgacgcctacacgttcaactccctcatcgtagggtattgccgcaccaaccaggtcgacgttgcccgcgacctgttcgacaaaatgcccctgagagggttcgcccaggacgtggtctcttacgccgcgctgattgaggggttctgtgagacggggaggattgacgaggcagtggagttgttcggggagatggaccagccagacatgcacatgtatgcagccttagtgaaggggttgtgtaaggcggggcggggggaggaggggcttctcatgttgcgtagaatgaaggaattggggtggcggccaagcacccgtgcttatgcagctgtggttgatttccggtgttgggagcgtaaggccaaggaagctgaggaaatgcttcaggagatgtttgaaaagggattggcaccgtgtgttgtgacatgcactgcagtgataaatgcctattgtaaggagggaaggatgagcgatgcattgagggtgttggagttgatgaagttgagggggtgcaagccgaatgtgtggacatataatgcattggtccaagggttctgtaatgaaggaaaggtgcacaaggcaatggctttgttgaacaagatgagagtatgtggagtcaacccagatgctgtgacatataatttgttgattcggggccaatgcattgatgggcatatagagagtgctttccgattgctacgtttgatggaaggagatggtttaattgctgatcagtacacatataatgcgttgatcaatgctctctgcaaggatggaagaactgatcaagcttgctcccttttTgatagtctagaaactagaggcataaaacctaatgccgtgacattcaattccttgataaatgggttatgcaagtctggtaaagttgacattgcatggaaatttttggaaaagatggtttctgcaggttgcacacccgatacttacacatacagttcatttattgaacacctatgcaagatgaaggggtcacaagaaggtctgtcctttataggggagatgctacaaaaggatgtgaagccctcaacagtcaattatacaattgtgattcataagcttttaaaggagagaaactatggattggttgcgagaacctggggcgaaatggtttcatcgggttgcaatcctgatgtagtcacttatacaacgtctatgcgtgcttactgcattgaaggaagactaaatgaagcagaaaatgttttgatggagatgagcaaaaatggggtcactgtagatacaatggcatacaatactctgatggatggacatgcaagtattggacagacagatcatgcagtctcaatcttgaaacaaatgacaagtgttgcttctgtgccaaaccagtttacttattttatcttgcttagacatcttgtacgcatgagattagtggaggatgtgttgcctttgaccccagctggtgtgtggaaagccatagagcttactgatgtctttgggttgtttgatgtaatgaagaagaacgaatttcttcctaattcaggaacttattcttccattctagaggggttttctgaagatggaagaacggaagaggcgacatcgttagtttctcttatgaaagaagatagtatatctctgaatgaagacatctatactgctctcgttacttgtttttgcaaatccaaaaggtatttggatgcatgggtgttggtttgctctatgattcaacatggttttataccacacttgatgtcctaccaacatctgctttctgggcttatttgtgaaggacaaacagataaggctaaagaaatattcatgaattctagatggaaagactatagtcccgatgagattgtgtggaaagtgattattgatggcctgataaaaaaaggtcactcagatatatcccgtgaaatgattatcatgttagaacgtatgaactgcagaccaagtcatcaaacctatgcaatgctgactgaggaattacctgacagggaataa
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| Protein seq | MGSSPALPRSTNPAALLAHLAAVLTSPDWFLNPSLPRLPALLAPSLPESLPAPLPVRLAAAAARAAAPSRHLLAVALPVVLRLHSLSPPPLRPLFDRPFASLLAHLSRFALAPLALRLFAHMHRHAPPAPAAPTYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQPDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTEELPDRE |
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| Function | Pentatricopeptide repeat-containing protein At5g65560 [UniProtKB/Swiss-Prot:Q9LSL9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0022450 | OsLiXu_02g0022450.01 | Chr02 | 23902240 | 23904890 | - | NAM | ||
| CDS seq | atgggctcgtctccagccttgccgcgctccaccaacccggcggcgctcctcgcccacctcgccgccgtcctcacctcgccagactggttcctcaacccttccctgccccgcctccccgccctgctcgcgccgtccctgcccgagtcgctccccgccccgctccccgtccgcctcgccgccgcggcggccagggcggccgcgccgtcccgccacctcctcgccgtcgcgctcccggtcgtcctccgcctccactccctctcgcctccgccgctccgcccgctcttcgaccgccccttcgcctccctcctcgcccacctctcccgcttcgccctcgcgccgctcgccctccgcctcttcgcccacatgcaccgccacgccccgccggcgccggccgcccccacctacaacgccgtcatccgctccctctgccgccgcgccgacctcgccagcgccctgcggtatctcagcctcatggtccgctccggctggcgccccgacgcctacacgttcaactccctcatcgtagggtattgccgcaccaaccaggtcgacgttgcccgcgacctgttcgacaaaatgcccctgagagggttcgcccaggacgtggtctcttacgccgcgctgattgaggggttctgtgagacggggaggattgacgaggcagtggagttgttcggggagatggaccagccagacatgcacatgtatgcagccttagtgaaggggttgtgtaaggcggggcggggggaggaggggcttctcatgttgcgtagaatgaaggaattggggtggcggccaagcacccgtgcttatgcagctgtggttgatttccggtgttgggagcgtaaggccaaggaagctgaggaaatgcttcaggagatgtttgaaaagggattggcaccgtgtgttgtgacatgcactgcagtgataaatgcctattgtaaggagggaaggatgagcgatgcattgagggtgttggagttgatgaagttgagggggtgcaagccgaatgtgtggacatataatgcattggtccaagggttctgtaatgaaggaaaggtgcacaaggcaatggctttgttgaacaagatgagagtatgtggagtcaacccagatgctgtgacatataatttgttgattcggggccaatgcattgatgggcatatagagagtgctttccgattgctacgtttgatggaaggagatggtttaattgctgatcagtacacatataatgcgttgatcaatgctctctgcaaggatggaagaactgatcaagcttgctcccttttTgatagtctagaaactagaggcataaaacctaatgccgtgacattcaattccttgataaatgggttatgcaagtctggtaaagttgacattgcatggaaatttttggaaaagatggtttctgcaggttgcacacccgatacttacacatacagttcatttattgaacacctatgcaagatgaaggggtcacaagaaggtctgtcctttataggggagatgctacaaaaggatgtgaagccctcaacagtcaattatacaattgtgattcataagcttttaaaggagagaaactatggattggttgcgagaacctggggcgaaatggtttcatcgggttgcaatcctgatgtagtcacttatacaacgtctatgcgtgcttactgcattgaaggaagactaaatgaagcagaaaatgttttgatggagatgagcaaaaatggggtcactgtagatacaatggcatacaatactctgatggatggacatgcaagtattggacagacagatcatgcagtctcaatcttgaaacaaatgacaagtgttgcttctgtgccaaaccagtttacttattttatcttgcttagacatcttgtacgcatgagattagtggaggatgtgttgcctttgaccccagctggtgtgtggaaagccatagagcttactgatgtctttgggttgtttgatgtaatgaagaagaacgaatttcttcctaattcaggaacttattcttccattctagaggggttttctgaagatggaagaacggaagaggcgacatcgttagtttctcttatgaaagaagatagtatatctctgaatgaagacatctatactgctctcgttacttgtttttgcaaatccaaaaggtatttggatgcatgggtgttggtttgctctatgattcaacatggttttataccacacttgatgtcctaccaacatctgctttctgggcttatttgtgaaggacaaacagataaggctaaagaaatattcatgaattctagatggaaagactatagtcccgatgagattgtgtggaaagtgattattgatggcctgataaaaaaaggtcactcagatatatcccgtgaaatgattatcatgttagaacgtatgaactgcagaccaagtcatcaaacctatgcaatgctgactgaggaattacctgacagggaataa
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| Protein seq | MGSSPALPRSTNPAALLAHLAAVLTSPDWFLNPSLPRLPALLAPSLPESLPAPLPVRLAAAAARAAAPSRHLLAVALPVVLRLHSLSPPPLRPLFDRPFASLLAHLSRFALAPLALRLFAHMHRHAPPAPAAPTYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQPDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTEELPDRE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.277892 | 0.350963 | 0.400551 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0582300 | RBH | 0.207459 | 0.566952 | 1.189695 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g37140 | RBH | 0.140295 | 0.381323 | 0.284375 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0582300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0022650 | RBH | 0.000000 | 0.0 | 0.298340 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0022760 | RBH | 0.000000 | 0.0 | 1.019278 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0022750 | RBH | 0.000000 | 0.000000 | 2.694659 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0022450 | RBH | 0.040691 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0022380 | RBH | 0.394882 | 4.895392 | 5.179493 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0367500 | RBH | 0.799686 | 5.0926975 | 1.9489155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0022130 | RBH | 0.123392 | 0.436754 | 0.375357 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0395500 | RBH | 0.6142995 | 4.173163 | 3.222181 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0022560 | RBH | 0.031250 | 0.091670 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0022300 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0022770 | RBH | 0.888618 | 4.266800 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0016350 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0022260 | RBH | 0.066805 | 1.046149 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G022700 | RBH | 0.000000 | 0.671014 | 0.349701 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0022550 | RBH | 0.537813 | 8.477854 | 0.888248 |
