Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0020220 | OGI:02057920 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:21402238-21402992 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcaggaaggttacgtgtactcgaggagggcgatgctgctggctccggcgtacggacacggggatagctccgccgccgccgccgcggccggggcgagccaggtgattgccggacaggaggcgccggccggcggcgacgtcgtggcggggcccgccgggacgagcagcttcgacgcgaacgtggtgatgatcctggccgtgctcctgtgcgcgctcatctgcgcgctggggctcaactcgatcgtgcggtgcgcgctccggtgctcgagcggcggccggatgatgatgtcttcgtcgtcgtcggcggcggcgggagatgacggcgagctgggtccgtcggcggcggcgcaggccgccggggtgcggcggaaggcgctgcgggcgatgccgacgatggtgtactcggcggcgggcgggccgagcccggcgtgcgccatctgcctcgccgacctggagcccggcgagcgcgtgcgcgtgctgcccaagtgcaaccacggcttccacgtccgctgcgtcgaccgctggctcctcgcgcgctccacctgcccgacgtgccggcagccgctgttcgccgcgccgccggtccggccgttcctcgcgcctctccggccggaaggcttcgtcacgccgtacgatttttaaactagacaataattattggctgcattattattatgcaggttagttttgtggtgtttggcgtaattgtagataaacaagatttgtattagaggcgaacttgtgagttacttgct
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| CDS seq | atgcaggaaggttacgtgtactcgaggagggcgatgctgctggctccggcgtacggacacggggatagctccgccgccgccgccgcggccggggcgagccaggtgattgccggacaggaggcgccggccggcggcgacgtcgtggcggggcccgccgggacgagcagcttcgacgcgaacgtggtgatgatcctggccgtgctcctgtgcgcgctcatctgcgcgctggggctcaactcgatcgtgcggtgcgcgctccggtgctcgagcggcggccggatgatgatgtcttcgtcgtcgtcggcggcggcgggagatgacggcgagctgggtccgtcggcggcggcgcaggccgccggggtgcggcggaaggcgctgcgggcgatgccgacgatggtgtactcggcggcgggcgggccgagcccggcgtgcgccatctgcctcgccgacctggagcccggcgagcgcgtgcgcgtgctgcccaagtgcaaccacggcttccacgtccgctgcgtcgaccgctggctcctcgcgcgctccacctgcccgacgtgccggcagccgctgttcgccgcgccgccggtccggccgttcctcgcgcctctccggccggaaggcttcgtcacgccgtacgatttttaa
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| Protein seq | MQEGYVYSRRAMLLAPAYGHGDSSAAAAAAGASQVIAGQEAPAGGDVVAGPAGTSSFDANVVMILAVLLCALICALGLNSIVRCALRCSSGGRMMMSSSSSAAAGDDGELGPSAAAQAAGVRRKALRAMPTMVYSAAGGPSPACAICLADLEPGERVRVLPKCNHGFHVRCVDRWLLARSTCPTCRQPLFAAPPVRPFLAPLRPEGFVTPYDF |
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| Function | RING-H2 finger protein ATL72 [UniProtKB/Swiss-Prot:Q9SG96] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0020220 | OsLiXu_02g0020220.01 | Chr02 | 21402238 | 21402992 | + | NAM | ||
| CDS seq | atgcaggaaggttacgtgtactcgaggagggcgatgctgctggctccggcgtacggacacggggatagctccgccgccgccgccgcggccggggcgagccaggtgattgccggacaggaggcgccggccggcggcgacgtcgtggcggggcccgccgggacgagcagcttcgacgcgaacgtggtgatgatcctggccgtgctcctgtgcgcgctcatctgcgcgctggggctcaactcgatcgtgcggtgcgcgctccggtgctcgagcggcggccggatgatgatgtcttcgtcgtcgtcggcggcggcgggagatgacggcgagctgggtccgtcggcggcggcgcaggccgccggggtgcggcggaaggcgctgcgggcgatgccgacgatggtgtactcggcggcgggcgggccgagcccggcgtgcgccatctgcctcgccgacctggagcccggcgagcgcgtgcgcgtgctgcccaagtgcaaccacggcttccacgtccgctgcgtcgaccgctggctcctcgcgcgctccacctgcccgacgtgccggcagccgctgttcgccgcgccgccggtccggccgttcctcgcgcctctccggccggaaggcttcgtcacgccgtacgatttttaa
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| Protein seq | MQEGYVYSRRAMLLAPAYGHGDSSAAAAAAGASQVIAGQEAPAGGDVVAGPAGTSSFDANVVMILAVLLCALICALGLNSIVRCALRCSSGGRMMMSSSSSAAAGDDGELGPSAAAQAAGVRRKALRAMPTMVYSAAGGPSPACAICLADLEPGERVRVLPKCNHGFHVRCVDRWLLARSTCPTCRQPLFAAPPVRPFLAPLRPEGFVTPYDF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.484763 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0541500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g33720 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0541500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0020340 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0020450 | RBH | 0.0 | 0.0 | 0.470621 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0020420 | RBH | 0.645130 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0020180 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0020130 | RBH | 0.0 | 0.0 | 1.621333 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0331600 | RBH | 0.6041505 | 4.149075 | 0.052722 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0019830 | RBH | 0.000000 | 0.172076 | 0.283506 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0353800 | RBH | 0.4406745 | 1.9468895 | 0.1631305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0020360 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0020090 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0020510 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0013250 | RBH | 0.0 | 0.497781 | 0.789290 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0020010 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G020470 | RBH | 0.0 | 0.0 | 0.470357 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020190 | RBH | 0.0 | 3.606478 | 1.154069 |
