Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0019490 | OGI:02055910 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:20599986-20601557 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggaagcggtgaggtgttttgtggtgttgtgcgtggctgtggcggcggcgctggcttctttgggtggcggtgcggttgatgcggcggcggcggcggcggcggcggcgcaggagatgcggcgaggcttctcggcggcgcacgaccggtcctactcgcagttcgagcaggtgctgtccgaccccaccggcgtcttcgccctcggcttcctccgcgtcaactccaccatgctcgacctcgccgtggtccacctcccgtcctcgttcccgctctggcgcgccatccccgaccgccccgcgcagtggtccgcgcccgcttcgctctccttcaacggcgacctcgtcctcaccgaccccgccgccaacaaggtcctctggtccgccggggccgccgccggagccggcggcgaccgcgtggtgctcctcaacacctccaacctccaaatccagagcggcggcggcggcggcgacggcggctcgtcgcccggtatcgtgtggcagagcttcgatgccccatcggagaccatcgtgcaaggccagaacctcacctccgcggcggcgctctacacctccgaccgccgcttctccatgcggatggggaccagctacttcgggctctacatcgagccgcccgcgtcgtcgtccggcggcggcggcgtcgcggcggcgatgtactggaagcacacggcgctgcaggccaaggccgcgatcgtggacggcggcggcccgacgtacgcgcgcgtggagcccgacggctacctcgccatgtaccagaaggaagggccacccgccgacatcatctccttcgacaccttcaaccatggcgtgcgggcgctccgccgcatgacgctcgaggccgacggcaacctccgcgcctactactgggacagcaccggctcccggtgggtgctcgactacaccgccatcaccgatccgtgcggcctgccaagcacctgcggcgcctacgccgtctgcgtgccgcccagcggccggtgcgcgtgcctggccaacgcgacggacggctcgggatgcgccgccgcaaacgtcggcggcggcgacggcctctgcggccgcacgggcggcgaggtgggcgggctgtactgggaggtgcggaggcagcgcgtggagccggcgaacaaggaattcctgccgttcgagcactcgccgtcggcggcggactgcgaggtgcggtgcgcgcgcaactgcagctgctggggcgccgtctacagcaacggcacggggtactgctacctcatggactacccggcgcagatgatggtggccgccgacgagaggaaggtggggtacttcaaggtgaggagcctggaggaggcggcggcggcgagcgggggcgggagggcggccggtgtcaaggcggcgctgcttgccgtcggcgtgacggtgctggtcgccgcggccgcgttcggggcgtacagggtgtggaagcggaggtgccggacggccgtggacgccaggcggcaggtcgtcgccgacgacgaggggctctcgccgggcccgtacaagaacctcggatccttcagctccgtcgagctctccagctccttccggaggtag
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| CDS seq | atggaagcggtgaggtgttttgtggtgttgtgcgtggctgtggcggcggcgctggcttctttgggtggcggtgcggttgatgcggcggcggcggcggcggcggcggcgcaggagatgcggcgaggcttctcggcggcgcacgaccggtcctactcgcagttcgagcaggtgctgtccgaccccaccggcgtcttcgccctcggcttcctccgcgtcaactccaccatgctcgacctcgccgtggtccacctcccgtcctcgttcccgctctggcgcgccatccccgaccgccccgcgcagtggtccgcgcccgcttcgctctccttcaacggcgacctcgtcctcaccgaccccgccgccaacaaggtcctctggtccgccggggccgccgccggagccggcggcgaccgcgtggtgctcctcaacacctccaacctccaaatccagagcggcggcggcggcggcgacggcggctcgtcgcccggtatcgtgtggcagagcttcgatgccccatcggagaccatcgtgcaaggccagaacctcacctccgcggcggcgctctacacctccgaccgccgcttctccatgcggatggggaccagctacttcgggctctacatcgagccgcccgcgtcgtcgtccggcggcggcggcgtcgcggcggcgatgtactggaagcacacggcgctgcaggccaaggccgcgatcgtggacggcggcggcccgacgtacgcgcgcgtggagcccgacggctacctcgccatgtaccagaaggaagggccacccgccgacatcatctccttcgacaccttcaaccatggcgtgcgggcgctccgccgcatgacgctcgaggccgacggcaacctccgcgcctactactgggacagcaccggctcccggtgggtgctcgactacaccgccatcaccgatccgtgcggcctgccaagcacctgcggcgcctacgccgtctgcgtgccgcccagcggccggtgcgcgtgcctggccaacgcgacggacggctcgggatgcgccgccgcaaacgtcggcggcggcgacggcctctgcggccgcacgggcggcgaggtgggcgggctgtactgggaggtgcggaggcagcgcgtggagccggcgaacaaggaattcctgccgttcgagcactcgccgtcggcggcggactgcgaggtgcggtgcgcgcgcaactgcagctgctggggcgccgtctacagcaacggcacggggtactgctacctcatggactacccggcgcagatgatggtggccgccgacgagaggaaggtggggtacttcaaggtgaggagcctggaggaggcggcggcggcgagcgggggcgggagggcggccggtgtcaaggcggcgctgcttgccgtcggcgtgacggtgctggtcgccgcggccgcgttcggggcgtacagggtgtggaagcggaggtgccggacggccgtggacgccaggcggcaggtcgtcgccgacgacgaggggctctcgccgggcccgtacaagaacctcggatccttcagctccgtcgagctctccagctccttccggaggtag
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| Protein seq | MEAVRCFVVLCVAVAAALASLGGGAVDAAAAAAAAAQEMRRGFSAAHDRSYSQFEQVLSDPTGVFALGFLRVNSTMLDLAVVHLPSSFPLWRAIPDRPAQWSAPASLSFNGDLVLTDPAANKVLWSAGAAAGAGGDRVVLLNTSNLQIQSGGGGGDGGSSPGIVWQSFDAPSETIVQGQNLTSAAALYTSDRRFSMRMGTSYFGLYIEPPASSSGGGGVAAAMYWKHTALQAKAAIVDGGGPTYARVEPDGYLAMYQKEGPPADIISFDTFNHGVRALRRMTLEADGNLRAYYWDSTGSRWVLDYTAITDPCGLPSTCGAYAVCVPPSGRCACLANATDGSGCAAANVGGGDGLCGRTGGEVGGLYWEVRRQRVEPANKEFLPFEHSPSAADCEVRCARNCSCWGAVYSNGTGYCYLMDYPAQMMVAADERKVGYFKVRSLEEAAAASGGGRAAGVKAALLAVGVTVLVAAAAFGAYRVWKRRCRTAVDARRQVVADDEGLSPGPYKNLGSFSSVELSSSFRR |
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| Function | PAN domain-containing protein At5g03700 [UniProtKB/Swiss-Prot:Q9LZR8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0019490 | OsLiXu_02g0019490.01 | Chr02 | 20599986 | 20601557 | + | NAM | ||
| CDS seq | atggaagcggtgaggtgttttgtggtgttgtgcgtggctgtggcggcggcgctggcttctttgggtggcggtgcggttgatgcggcggcggcggcggcggcggcggcgcaggagatgcggcgaggcttctcggcggcgcacgaccggtcctactcgcagttcgagcaggtgctgtccgaccccaccggcgtcttcgccctcggcttcctccgcgtcaactccaccatgctcgacctcgccgtggtccacctcccgtcctcgttcccgctctggcgcgccatccccgaccgccccgcgcagtggtccgcgcccgcttcgctctccttcaacggcgacctcgtcctcaccgaccccgccgccaacaaggtcctctggtccgccggggccgccgccggagccggcggcgaccgcgtggtgctcctcaacacctccaacctccaaatccagagcggcggcggcggcggcgacggcggctcgtcgcccggtatcgtgtggcagagcttcgatgccccatcggagaccatcgtgcaaggccagaacctcacctccgcggcggcgctctacacctccgaccgccgcttctccatgcggatggggaccagctacttcgggctctacatcgagccgcccgcgtcgtcgtccggcggcggcggcgtcgcggcggcgatgtactggaagcacacggcgctgcaggccaaggccgcgatcgtggacggcggcggcccgacgtacgcgcgcgtggagcccgacggctacctcgccatgtaccagaaggaagggccacccgccgacatcatctccttcgacaccttcaaccatggcgtgcgggcgctccgccgcatgacgctcgaggccgacggcaacctccgcgcctactactgggacagcaccggctcccggtgggtgctcgactacaccgccatcaccgatccgtgcggcctgccaagcacctgcggcgcctacgccgtctgcgtgccgcccagcggccggtgcgcgtgcctggccaacgcgacggacggctcgggatgcgccgccgcaaacgtcggcggcggcgacggcctctgcggccgcacgggcggcgaggtgggcgggctgtactgggaggtgcggaggcagcgcgtggagccggcgaacaaggaattcctgccgttcgagcactcgccgtcggcggcggactgcgaggtgcggtgcgcgcgcaactgcagctgctggggcgccgtctacagcaacggcacggggtactgctacctcatggactacccggcgcagatgatggtggccgccgacgagaggaaggtggggtacttcaaggtgaggagcctggaggaggcggcggcggcgagcgggggcgggagggcggccggtgtcaaggcggcgctgcttgccgtcggcgtgacggtgctggtcgccgcggccgcgttcggggcgtacagggtgtggaagcggaggtgccggacggccgtggacgccaggcggcaggtcgtcgccgacgacgaggggctctcgccgggcccgtacaagaacctcggatccttcagctccgtcgagctctccagctccttccggaggtag
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| Protein seq | MEAVRCFVVLCVAVAAALASLGGGAVDAAAAAAAAAQEMRRGFSAAHDRSYSQFEQVLSDPTGVFALGFLRVNSTMLDLAVVHLPSSFPLWRAIPDRPAQWSAPASLSFNGDLVLTDPAANKVLWSAGAAAGAGGDRVVLLNTSNLQIQSGGGGGDGGSSPGIVWQSFDAPSETIVQGQNLTSAAALYTSDRRFSMRMGTSYFGLYIEPPASSSGGGGVAAAMYWKHTALQAKAAIVDGGGPTYARVEPDGYLAMYQKEGPPADIISFDTFNHGVRALRRMTLEADGNLRAYYWDSTGSRWVLDYTAITDPCGLPSTCGAYAVCVPPSGRCACLANATDGSGCAAANVGGGDGLCGRTGGEVGGLYWEVRRQRVEPANKEFLPFEHSPSAADCEVRCARNCSCWGAVYSNGTGYCYLMDYPAQMMVAADERKVGYFKVRSLEEAAAASGGGRAAGVKAALLAVGVTVLVAAAAFGAYRVWKRRCRTAVDARRQVVADDEGLSPGPYKNLGSFSSVELSSSFRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.231313 | 0.145474 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0527900 | RBH | 0.345665 | 0.333662 | 0.637859 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g32620 | RBH | 0.159853 | 0.072392 | 0.179657 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0527900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0019590 | RBH | 0.110361 | 0.772373 | 0.203862 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0019700 | RBH | 0.0 | 3.203072 | 0.147372 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0019640 | RBH | 0.202086 | 1.066259 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0019420 | RBH | 0.0 | 0.077952 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0019380 | RBH | 1.030856 | 3.451061 | 1.113496 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0528500 | SBH | 0.0201085 | 7.6787035 | 0.0235595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0019090 | RBH | 0.0 | 0.336681 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0340500 | RBH | 0.962536 | 16.035306 | 0.947843 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0019630 | RBH | 0.020116 | 0.055730 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0019360 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0019770 | RBH | 0.0 | 7.331929 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0019280 | RBH | 0.075829 | 0.445300 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G019710 | RBH | 0.083949 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0019430 | RBH | 0.0 | 7.027032 | 0.459014 |
