Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0016780 | OGI:02047020 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:17218797-17220209 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaaggcggtagaaaacacgtatttggattgatgtttaaatgatgttcatgtgcatttttcaatttattttttttgcaacttcctaaataagacagtagaaagggaaggggatttatttttttctggaaaatcattttctttggcggttggcttaatcttgccgcctgcagaagtctattttcgttgacggtccacttaaccttgctaccagcaaaaattatcagccgactatttcttagcacaaatatattatttttaatggcctttgatcgctggcggtacagctgaccaccagcgaaaacctattttgaccatcagcataaactgttttttagtagtgactccctctgtttcttttcttggattcgccactagatgggttcgacttgttggttgccttccaactttcgtcaagccacgaattaatggtgcttgtgtcacttaggtggcccaagtagctgctcgcctgctcacaatccagcttgggatttgctcgtttccttaacaagatactccatatgaatgattcccaaagacaaattgtgtttaagagaagtttaacagtatagcctactactagcttcaattcaaccatagccaatccagtagccaattcatataatagttgcttattatactatcaatatatggtcccatttatcatacacacacattgcgttttagagtctacgctgcagctagctacagatctgtagcctgctgctcttctctctcattttttatctcattttttatcgccgcctacatctacggcgacagcggcatcggcatcccccgcaatagtaccgagcgcttcctctacctacagaaccaggcccgcgccgacgtcggcgtcgcgccgctcgcgtgggacggcacggtggccgcgtacgcggagaagaacgccgccgcgaggaaaggtgactgtgatctcaagcactccggcggaccatacggggagaacatattctggggcagcgcgggcgccaactggacggccaccgacgcggtggcctcgtgggcctcggagaagcagtggtacaactgcagcgacgactcgtgcgacgctcccggtgggcgagggtgcacccactacaagcagatggtgtgggcgaagacgaccaaggtcgggtgcgcgtccgtgagctgcgacgcgaaccgcggcacgttcatggtgtgcgagtacgatccaccaggcaacgtgccgggtgtccaggcgtacgccggatgcggacacttcaatcaaacaggtacgtggtatgaacctgctatatccattttagaccatgtttggtgaagctccagcccccggattcttcgcttctcttctgttgggatagatctcaacaaaacgttattagaaccttgaaaacacgaagcagatctagcaggttggatcagccccaattaa
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| CDS seq | atgaaggcggcccgcgccgacgtcggcgtcgcgccgctcgcgtgggacggcacggtggccgcgtacgcggagaagaacgccgccgcgaggaaaggtgactgtgatctcaagcactccggcggaccatacggggagaacatattctggggcagcgcgggcgccaactggacggccaccgacgcggtggcctcgtgggcctcggagaagcagtggtacaactgcagcgacgactcgtgcgacgctcccggtgggcgagggtgcacccactacaagcagatggtgtgggcgaagacgaccaaggtcgggtgcgcgtccgtgagctgcgacgcgaaccgcggcacgttcatggtgtgcgagtacgatccaccaggcaacgtgccgggtgtccaggcgtacgccggatgcggacacttcaatcaaacaggttggatcagccccaattaa
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| Protein seq | MKAARADVGVAPLAWDGTVAAYAEKNAAARKGDCDLKHSGGPYGENIFWGSAGANWTATDAVASWASEKQWYNCSDDSCDAPGGRGCTHYKQMVWAKTTKVGCASVSCDANRGTFMVCEYDPPGNVPGVQAYAGCGHFNQTGWISPN |
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| Function | Pathogenesis-related protein PRMS [UniProtKB/Swiss-Prot:Q00008] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0016780 | OsLiXu_02g0016780.01 | Chr02 | 17218797 | 17220209 | + | NAM | ||
| CDS seq | atgaaggcggcccgcgccgacgtcggcgtcgcgccgctcgcgtgggacggcacggtggccgcgtacgcggagaagaacgccgccgcgaggaaaggtgactgtgatctcaagcactccggcggaccatacggggagaacatattctggggcagcgcgggcgccaactggacggccaccgacgcggtggcctcgtgggcctcggagaagcagtggtacaactgcagcgacgactcgtgcgacgctcccggtgggcgagggtgcacccactacaagcagatggtgtgggcgaagacgaccaaggtcgggtgcgcgtccgtgagctgcgacgcgaaccgcggcacgttcatggtgtgcgagtacgatccaccaggcaacgtgccgggtgtccaggcgtacgccggatgcggacacttcaatcaaacaggttggatcagccccaattaa
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| Protein seq | MKAARADVGVAPLAWDGTVAAYAEKNAAARKGDCDLKHSGGPYGENIFWGSAGANWTATDAVASWASEKQWYNCSDDSCDAPGGRGCTHYKQMVWAKTTKVGCASVSCDANRGTFMVCEYDPPGNVPGVQAYAGCGHFNQTGWISPN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0472500 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g27300 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0472500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0016780 | RBH | 0.639609 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0016910 | SBH | 0.038671 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0016790 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0016680 | RBH | 0.041160 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0016590 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0268700 | RBH | 0.515079 | 0.260926 | 0.078959 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0016360 | SBH | 0.073459 | 0.0 | 0.037450 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0289700 | RBH | 0.0049115 | 0.002515 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0016910 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0016460 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0017010 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0016790 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0016530 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G016960 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0016680 | RBH | 0.000000 | 0.0 | 0.169651 |
