Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0013370 | OGI:01024340 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:11551912-11555305 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggttcaccaaaagcgttcaaaattggataattgtagccagcccataagtgaatctgatgatattaattctgagtctttgcctgctaaagatgatgattacaattgtgattctgatgataactcaaccagtcatgtaagtttattttacatttcaatttcattgatttgtaatatagttgttcttttcatttccatttgtaaattcatgaagagtttgcaattatacattctcattgcttggtagccaatgtaatagtaggaccaatattttcttgttttatttgttcttgaattgtcatgttgttccaaggtcagaatagtatccattattctttcattattatttttcattagtatgcagttgtagctctgttgtagccatgtttcatagcacatttgcaatgttttaattgtttaatatgttcttttaggatatggatgtttcacaaccgcatgtaaatgaaatttctacaaatgaacttctgaaaaaatttgaaaaggaaactcagtaagtctaaaagaagtgaagatgataacattaaggtaattattttgtttgttatttttcattttatatttttccatcattcttgtttttaattttgaattttttttagatgaaaaggtctgaatctattgaattggacaatgatgtaatgataaatcaggttctacgtgatatcatacaaagggatcaaattatcaacagtttgaaaaaaaagcttaatattcatcacaacataggtgatcaaaatttgaaggttagtttttttgcaatgcccttttatatctatgtttggtttttatttattgattaaattgttttattttctttttgtcaggacaaaaatgttgacactgatttgaagtctgatgcattctctagattctcagtcaaatatttctcaaaagttcttgattctttaagtccacatcacaaaacagtcattgaaaattcttgttttcaaagcatgctgctatttgacaagtgttttgttcccaattcttttgctctctggattgcaaaacaagtagatgtgaactgttctgatatagttttgggccaaaaacttattccattgaacaagcaatctttccatgttgtgctaggcctccctattggtggtagtacaatccattcaaaatttgattctggcaaacaaaagattcttcagatttttgggaaaacttctattccttctgtcaagttctttggagaaaagttaattaaaaatgaagaacttcctgatgatcaaattatcatctgctttatgattgtttccttgaattgctttctttgtccaaactcttctttgattccaagtacaaaatacctaagtgcctttgaagacatggacttaattgaaagtttggactggtgcaagttagtttttgactagttgatggaacacattagcaagattgagaaatcgaaaacttttggtggttgtttattccatttagcggtaaatttttttccctccatttatgctaatttatattttgtactaaatgactattcatttaatttctatattcaatgtttcataggttaattacctggattttctcaactttggttcacaaaaagtattacttgatacacctagaattaaagtttggaaaagatctatgattaaggactattccaaatttgataaaatatctgaaggagtgtatggaaaaagacccgtcaatgatattgcttcaacttgttaccaaatggtaaatgttcagTtttttttttcaaattttttatcttttcaagttctaataaattttcttagattggaattgaaaattctgttttaatttttaggtgaataatagctcatcttcatttgctgatatgctcaaaagttctgttggtgatctgttgccaagtgatgttcaagacaaaatttgtcatttgctctgcaatcattttggaaaagaagatgaaatctttgaagacaaggctaagaaacttcttatagatgttctgttgttgttagctgattgcagttccaattatcctactcaacctgctgcacatgaaaattcaggttattacttttaatttacgaattttgttgtttattttatttttaatttttttccattcatatgtcttgatttttttataaattttaaattaaggaattgaaccagatcatgaaccagttgaagaaaataatgatgatgttaatcaagctgtgcaaaaaataacaatttcacctcatctccaaaggtacattgtttttgttctcatttcaatttttttattctaatagtcatgtgaatcattaagcaTttttttgtccttttaTtttttttttgtagggaaacagtaaaacagtactagatgatgataagttgccaattccaaatgaagaatttaatcctgtgaataagtctaccattttgaattcttcagaagaggtttttttttcatttttatttcaatcattataatctgaatatatagaactgtaattgttgatagtttttaactgtcattttttatctgtgcagattaaacatatcaacattgatgaaataatgacaaagttgaacaaaacaggttattttttttctaaatttgttaatctatttttttaaaaaattaaatatgaattattgatgtttgtgcctatttaacattgaaggtcatgttcctattaatccaccagatgaaacagagaaaaattctgccttgactagtaaattttttttaatggaatctcatttgtttttacttgtatatcttgaattgttctagcatcAaaaaaattgagttattgtaatatttcatttcttttgtcatgtgattttagtgcactgtactatggtcctcttactttttgttgccatattttttgtttctaattcttatgttattgctgtagctcgaaacaatcaagtttttcatgatcaaccgtcttttaaaatctgggattctgatgatgacctccatcatgaaaatgatgatttcaaaaaagaaattacacctgctcatcttgtagattcatatcaagtttttcctgcttcgtactccccaaatcctgttttaagaaataaggtacttgtgaagtaacttcaaatttcataaggaatacttttttagaacattatattgatttatacaaatcttgcagatcactccaagaaagttgtctcaaacttttgctgctgctgttgaaagcccaataatctgttcagacagtccggtaattctgacattaatttctttctttatttcttctgtatatacaaactaaactttcatttgttaaattttgaaattttaggataagatgtacatggtgacacttgaaaattcaacttctcctaatgcttctctcaatgaaaacaaagaaaatgaaaaagattgtcacatcataaaggtatga
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| CDS seq | atggttcaccaaaagcgttcaaaattggataattgtagccagcccataagtgaatctgatgatattaattctgagtctttgcctgctaaagatgatgattacaattgtgattctgatgataactcaaccagtcatatgaaaaggtctgaatctattgaattggacaatgatgtaatgataaatcaggttctacgtgatatcatacaaagggatcaaattatcaacagtttgaaaaaaaagcttaatattcatcacaacataggtgatcaaaatttgaaggacaaaaatgttgacactgatttgaagtctgatgcattctctagattctcagtcaaatatttctcaaaagttcttgattctttaagtccacatcacaaaacagtcattgaaaattcttgttttcaaagcatgctgctatttgacaagtgttttgttcccaattcttttgctctctggattgcaaaacaagtagatgtgaactgttctgatatagttttgggccaaaaacttattccattgaacaagcaatctttccatgttgtgctaggcctccctattggtggtagtacaatccattcaaaatttgattctggcaaacaaaagattcttcagatttttgggaaaacttctattccttctgtcaagttctttggagaaaagttaattaaaaatgaagaacttcctgatgatcaaattatcatctgctttatgattgtttccttgaattgctttctttgtccaaactcttctttgattccaagtacaaaatacctaagtgcctttgaagacatggacttaattgaaagtttggactggtgcaagttagttaattacctggattttctcaactttggttcacaaaaagtattacttgatacacctagaattaaagtttggaaaagatctatgattaaggactattccaaatttgataaaatatctgaaggagtgtatggaaaaagacccgtcaatgatattgcttcaacttgttaccaaatggtgaataatagctcatcttcatttgctgatatgctcaaaagttctgttggtgatctgttgccaagtgatgttcaagacaaaatttgtcatttgctctgcaatcattttggaaaagaagatgaaatctttgaagacaaggctaagaaacttcttatagatgttctgttgttgttagctgattgcagttccaattatcctactcaacctgctgcacatgaaaattcaggaattgaaccagatcatgaaccagttgaagaaaataatgatgatgttaatcaagctgtgcaaaaaataacaatttcacctcatctccaaagtaaaacagtactagatgatgataagttgccaattccaaatgaagaatttaatcctgtgaataagtctaccattttgaattcttcagaagagattaaacatatcaacattgatgaaataatgacaaagttgaacaaaacaggtcatgttcctattaatccaccagatgaaacagagaaaaattctgccttgactactcgaaacaatcaagtttttcatgatcaaccgtcttttaaaatctgggattctgatgatgacctccatcatgaaaatgatgatttcaaaaaagaaattacacctgctcatcttgtagattcatatcaagtttttcctgcttcgtactccccaaatcctgttttaagaaataagatcactccaagaaagttgtctcaaacttttgctgctgctgttgaaagcccaataatctgttcagacagtccggataagatgtacatggtgacacttgaaaattcaacttctcctaatgcttctctcaatgaaaacaaagaaaatgaaaaagattgtcacatcataaaggtatga
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| Protein seq | MVHQKRSKLDNCSQPISESDDINSESLPAKDDDYNCDSDDNSTSHMKRSESIELDNDVMINQVLRDIIQRDQIINSLKKKLNIHHNIGDQNLKDKNVDTDLKSDAFSRFSVKYFSKVLDSLSPHHKTVIENSCFQSMLLFDKCFVPNSFALWIAKQVDVNCSDIVLGQKLIPLNKQSFHVVLGLPIGGSTIHSKFDSGKQKILQIFGKTSIPSVKFFGEKLIKNEELPDDQIIICFMIVSLNCFLCPNSSLIPSTKYLSAFEDMDLIESLDWCKLVNYLDFLNFGSQKVLLDTPRIKVWKRSMIKDYSKFDKISEGVYGKRPVNDIASTCYQMVNNSSSSFADMLKSSVGDLLPSDVQDKICHLLCNHFGKEDEIFEDKAKKLLIDVLLLLADCSSNYPTQPAAHENSGIEPDHEPVEENNDDVNQAVQKITISPHLQSKTVLDDDKLPIPNEEFNPVNKSTILNSSEEIKHINIDEIMTKLNKTGHVPINPPDETEKNSALTTRNNQVFHDQPSFKIWDSDDDLHHENDDFKKEITPAHLVDSYQVFPASYSPNPVLRNKITPRKLSQTFAAAVESPIICSDSPDKMYMVTLENSTSPNASLNENKENEKDCHIIKV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0013370 | OsLiXu_02g0013370.01 | Chr02 | 11551912 | 11555305 | + | NAM | ||
| CDS seq | atggttcaccaaaagcgttcaaaattggataattgtagccagcccataagtgaatctgatgatattaattctgagtctttgcctgctaaagatgatgattacaattgtgattctgatgataactcaaccagtcatatgaaaaggtctgaatctattgaattggacaatgatgtaatgataaatcaggttctacgtgatatcatacaaagggatcaaattatcaacagtttgaaaaaaaagcttaatattcatcacaacataggtgatcaaaatttgaaggacaaaaatgttgacactgatttgaagtctgatgcattctctagattctcagtcaaatatttctcaaaagttcttgattctttaagtccacatcacaaaacagtcattgaaaattcttgttttcaaagcatgctgctatttgacaagtgttttgttcccaattcttttgctctctggattgcaaaacaagtagatgtgaactgttctgatatagttttgggccaaaaacttattccattgaacaagcaatctttccatgttgtgctaggcctccctattggtggtagtacaatccattcaaaatttgattctggcaaacaaaagattcttcagatttttgggaaaacttctattccttctgtcaagttctttggagaaaagttaattaaaaatgaagaacttcctgatgatcaaattatcatctgctttatgattgtttccttgaattgctttctttgtccaaactcttctttgattccaagtacaaaatacctaagtgcctttgaagacatggacttaattgaaagtttggactggtgcaagttagttaattacctggattttctcaactttggttcacaaaaagtattacttgatacacctagaattaaagtttggaaaagatctatgattaaggactattccaaatttgataaaatatctgaaggagtgtatggaaaaagacccgtcaatgatattgcttcaacttgttaccaaatggtgaataatagctcatcttcatttgctgatatgctcaaaagttctgttggtgatctgttgccaagtgatgttcaagacaaaatttgtcatttgctctgcaatcattttggaaaagaagatgaaatctttgaagacaaggctaagaaacttcttatagatgttctgttgttgttagctgattgcagttccaattatcctactcaacctgctgcacatgaaaattcaggaattgaaccagatcatgaaccagttgaagaaaataatgatgatgttaatcaagctgtgcaaaaaataacaatttcacctcatctccaaagtaaaacagtactagatgatgataagttgccaattccaaatgaagaatttaatcctgtgaataagtctaccattttgaattcttcagaagagattaaacatatcaacattgatgaaataatgacaaagttgaacaaaacaggtcatgttcctattaatccaccagatgaaacagagaaaaattctgccttgactactcgaaacaatcaagtttttcatgatcaaccgtcttttaaaatctgggattctgatgatgacctccatcatgaaaatgatgatttcaaaaaagaaattacacctgctcatcttgtagattcatatcaagtttttcctgcttcgtactccccaaatcctgttttaagaaataagatcactccaagaaagttgtctcaaacttttgctgctgctgttgaaagcccaataatctgttcagacagtccggataagatgtacatggtgacacttgaaaattcaacttctcctaatgcttctctcaatgaaaacaaagaaaatgaaaaagattgtcacatcataaaggtatga
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| Protein seq | MVHQKRSKLDNCSQPISESDDINSESLPAKDDDYNCDSDDNSTSHMKRSESIELDNDVMINQVLRDIIQRDQIINSLKKKLNIHHNIGDQNLKDKNVDTDLKSDAFSRFSVKYFSKVLDSLSPHHKTVIENSCFQSMLLFDKCFVPNSFALWIAKQVDVNCSDIVLGQKLIPLNKQSFHVVLGLPIGGSTIHSKFDSGKQKILQIFGKTSIPSVKFFGEKLIKNEELPDDQIIICFMIVSLNCFLCPNSSLIPSTKYLSAFEDMDLIESLDWCKLVNYLDFLNFGSQKVLLDTPRIKVWKRSMIKDYSKFDKISEGVYGKRPVNDIASTCYQMVNNSSSSFADMLKSSVGDLLPSDVQDKICHLLCNHFGKEDEIFEDKAKKLLIDVLLLLADCSSNYPTQPAAHENSGIEPDHEPVEENNDDVNQAVQKITISPHLQSKTVLDDDKLPIPNEEFNPVNKSTILNSSEEIKHINIDEIMTKLNKTGHVPINPPDETEKNSALTTRNNQVFHDQPSFKIWDSDDDLHHENDDFKKEITPAHLVDSYQVFPASYSPNPVLRNKITPRKLSQTFAAAVESPIICSDSPDKMYMVTLENSTSPNASLNENKENEKDCHIIKV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0164000 | RBH | 0.0 | 0.0 | 0.350974 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g33280 | SBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0164000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0000760 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0000800 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0000770 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0017010 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0013140 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0181100 | RBH | 0.082067 | 0.6352185 | 0.1644755 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0012930 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0193600 | RBH | 0 | 0 | 0.0051785 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0013490 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0013030 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0013550 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0008420 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0013190 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G013520 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0013290 | RBH | 0.0 | 0.0 | 0.0 |
