Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0012860 | OGI:02030580 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:11016163-11019457 | ||||||||
| Gene Symbol | OsUbDKgamma4, UbDKgamma4 | ||||||||||
| DNA seq | acattgacaatgatccaaacattgttctcaggatttggcgatgccaacactttaaacaggtttacattgacaatgatccaaacaagcttctcaggtgctaggttttgctgaaattaccaagcataaagaacactcgatgcaactacagtctacattacaagtacaggtaaaaaagtggatgttccttgttatattcacaaaatgttcacggtaatgagttcaacggccaaactcgttatttcatttagtgactacgatacatacttacaaccgggcacaattcgagtaactcgatcatttattcagaacttctttaacttcacagcaagcttatcaaggtgaaagtccatgatctccgagatggtctccaagaatgtctcctcactagttcctggaaggacggcatcctctgcttcctctatgatggcctcgatttcagattcttttttgactgtttgcctgcataagatgctgccgatgtcataaggcgttagacctctctctgcccccttcttcaaaagcattgtgctgatgcgcagaactcgggcacactggggagatagcgcccacccgtggaacttgagaagcgcaacgtctttgtcagcatctagtgatccaatgtatgctgcggtttctggaccgaagggttcgcgggcttggggccagtagagccactcaaaggtacaatcttcaaactgcagaggggaaaagataaagactcgtaaactggtacagaaaaattgattgaactaagcaagatagcgtacaaggaaataacttgtacaaaaataatgccagctaacaacgattcaaatcaaatgaatattaaggacacacggccttgtttactggatcagtgccgaaattgtcacattaacatagacaaaaacattgagaaaatacgaggatattactgacattgtttaaacttccaacaacactaaataattactagggatctctatgtatgctaaggaaaaaaaatagcagtttaagtttaccaattcaagcgagtgaacataaatacaattgtttcacatgatagcaatgatcaaataccttctctggcaggcagtacccatgatcaattggaatcaacttcaagtgatcttctccatcttggcaaactaatatgttcccagcatgacgatcagcatttgccaacctaatatccagtatggcaatcttctgaacctctttaactgggaaagctcgagggcccatatcctcacaactgccattgttatctacaaacagctgcaatgatccaaccttagatcccttccccatatggaaacaacggaccaacgctgtgggtggtacaccagaaaatccaggaacatcacacgatttacatccataaactggatggtcaagaatatatgctgcaacctcccttaatgcaccttcccctactcgcgttccccttttcaacccctcaccatcaattgacaaaggaaggcccctggggttattctttgccattggttcctcatctataggcttgaatactgcaacattgctttcacctgaagaatccttcatgaaatagactccccctgaaccctctgttgacattacgggaaggtacccgttttctagaccagaaattgttgagtatatcatttccatcacagcaggagacaatttcacctttccattagcaatgattggctcaactggagcaggtttacccttagctggtttcgcaaggttcaaagcatctgtttggaggttatcattgtctttgggagtaacaactgtaacaacagtctccttatcaccctgctgtgtctgaacctttgctggcctgcggatgaacaagtggataactgcagcacccttcttgctaatatctgcaatcaactggttatcctcaagctcttcaccgtcaaacacaagcctttggtccttgagactcccaagttgctgtccgctctcagctgagagcttgtccttgagatacccaacattgcagcgactctccacctggaactgaaatttcttcccattggcagtctcaatgcttatcgcacggaggtcagccaaccgcacgacaagatgaagcacatttccatcggtaagtccataatccctgacatgggagttgtttagtgacagctcatgcccactgaacaccagccgctgcttggtagtgacaaagcccttggactgctggatgcggagcttgaccgaggcaacagagtctgagtgcaggacacgcattggcatgggtgccaccccgggcatggcaagaaaaatgacaatagaatccagctgctgcgaccggggctcaccatggggcacaaaacaaaactggtccagcagggggctgagtgtggctataccggccgacgacatctttgctgatctcaagcaacacagccaaggcagccaaagctactgatgcaacaagcacaagtgcacagccaccagcactagaagcagctatttgcgctatgaattagtggatgtaacccattgatgaaaaaaaataaaccctagggtctcctatcaacaaggaaaccctaggggccaccgcttgacaccaatgcgcctacaaccccttcttggcccccaatgcgttcaaccctgcacattcaagagaaacaaatcatcaaaccctaggtgagcaatcgtggtactcaaagcagcaatttcagcaaaccacatagcaacaatctgagcatttcgcacccgaaccaaaggaattgtgcaaaggcagcaggatcgtctctgctgctactccaatggcgcagcagcacagcatctgtagaagttaaaaaaaaaagaaaaaaaatataaatcgagtaggaactcgagttcggccgggggattcgaacagcacaagcaacagagagacccctcaccggaattgatataaacaaattggatccgaggaggcgagaagaccgagcccccccgcctcccgtctccgtctccgactccgacggccgcgaacaccccgcgagattccgcttccgaactcgcgcaatctacgatcgatcgccattgccaacacgcgttagagacacaaacccgaatccaaaaaatcgcaccacttccccatcgatcgatcctacccatcaataacacaggaatcaaatcgctcccgcgggagggagaaatcgcggaaagcgaatcggagaacgaatggatcatcttaccacggctcagggaggcgcggattggtccgatcaactgctccgcccttcagaagagagagagagagagagagagagaaattgaaaagaagaaaaaatgggtgagggtttaaacttagcgtggttggtgt
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| CDS seq | atgtcgtcggccggtatagccacactcagccccctgctggaccagttttgttttgtgccccatggtgagccccggtcgcagcagctggattctattgtcatttttcttgccatgcccggggtggcacccatgccaatgcgtgtcctgcactcagactctgttgcctcggtcaagctccgcatccagcagtccaagggctttgtcactaccaagcagcggctggtgttcagtgggcatgagctgtcactaaacaactcccatgtcagggattatggacttaccgatggaaatgtgcttcatcttgtcgtgcggttggctgacctccgtgcgataagcattgagactgccaatgggaagaaatttcagttccaggtggagagtcgctgcaatgttgggtatctcaaggacaagctctcagctgagagcggacagcaacttgggagtctcaaggaccaaaggcttgtgtttgacggtgaagagcttgaggataaccagttgattgcagatattagcaagaagggtgctgcagttatccacttgttcatccgcaggccagcaaaggttcagacacagcagggtgataaggagactgttgttacagttgttactcccaaagacaatgataacctccaaacagatgctttgaaccttgcgaaaccagctaagggtaaacctgctccagttgagccaatcattgctaatggaaaggtgaaattgtctcctgctgtgatggaaatgatatactcaacaatttctggtctagaaaacgggtaccttcccgtaatgtcaacagagggttcagggggagtctatttcatgaaggattcttcaggtgaaagcaatgttgcagtattcaagcctatagatgaggaaccaatggcaaagaataaccccaggggccttcctttgtcaattgatggtgaggggttgaaaaggggaacgcgagtaggggaaggtgcattaagggaggttgcagcatatattcttgaccatccagtttatggatgtaaatcgtgtgatgttcctggattttctggtgtaccacccacagcgttggtccgttgtttccatatggggaagggatctaaggttggatcattgcagctgtttgtagataacaatggcagttgtgaggatatgggccctcgagctttcccagttaaagaggttcagaagattgccatactggatattaggttggcaaatgctgatcgtcatgctgggaacatattagtttgccaagatggagaagatcacttgaagttgattccaattgatcatgggtactgcctgccagagaagtttgaagattgtacctttgagtggctctactggccccaagcccgcgaacccttcggtccagaaaccgcagcatacattggatcactagatgctgacaaagacgttgcgcttctcaagttccacgggtgggcgctatctccccagtgtgcccgagttctgcgcatcagcacaatgcttttgaagaagggggcagagagaggtctaacgccttatgacatcggcagcatcttatgcaggcaaacagtcaaaaaagaatctgaaatcgaggccatcatagaggaagcagaggatgccgtccttccaggaactagtgaggagacattcttggagaccatctcggagatcatggactttcaccttgataagcttgctgtgaagttaaagaagttctga
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| Protein seq | MSSAGIATLSPLLDQFCFVPHGEPRSQQLDSIVIFLAMPGVAPMPMRVLHSDSVASVKLRIQQSKGFVTTKQRLVFSGHELSLNNSHVRDYGLTDGNVLHLVVRLADLRAISIETANGKKFQFQVESRCNVGYLKDKLSAESGQQLGSLKDQRLVFDGEELEDNQLIADISKKGAAVIHLFIRRPAKVQTQQGDKETVVTVVTPKDNDNLQTDALNLAKPAKGKPAPVEPIIANGKVKLSPAVMEMIYSTISGLENGYLPVMSTEGSGGVYFMKDSSGESNVAVFKPIDEEPMAKNNPRGLPLSIDGEGLKRGTRVGEGALREVAAYILDHPVYGCKSCDVPGFSGVPPTALVRCFHMGKGSKVGSLQLFVDNNGSCEDMGPRAFPVKEVQKIAILDIRLANADRHAGNILVCQDGEDHLKLIPIDHGYCLPEKFEDCTFEWLYWPQAREPFGPETAAYIGSLDADKDVALLKFHGWALSPQCARVLRISTMLLKKGAERGLTPYDIGSILCRQTVKKESEIEAIIEEAEDAVLPGTSEETFLETISEIMDFHLDKLAVKLKKF |
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| Function | Phosphatidylinositol 4-kinase gamma 4 [UniProtKB/Swiss-Prot:Q6K881] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0012860 | OsLiXu_02g0012860.02 | Chr02 | 11016185 | 11019164 | - | NAM | ||
| CDS seq | atgtcgtcggccggtatagccacactcagccccctgctggaccagttttgttttgtgccccatggtgagccccggtcgcagcagctggattctattgtcatttttcttgccatgcccggggtggcacccatgccaatgcgtgtcctgcactcagactctgttgcctcggtcaagctccgcatccagcagtccaagggctttgtcactaccaagcagcggctggtgttcagtgggcatgagctgtcactaaacaactcccatgtcagggattatggacttaccgatggaaatgtgcttcatcttgtcgtgcggttggctgacctccgtgcgataagcattgagactgccaatgggaagaaatttcagttccaggtggagagtcgctgcaatgttgggtatctcaaggacaagctctcagctgagagcggacagcaacttgggagtctcaaggaccaaaggcttgtgtttgacggtgaagagcttgaggataaccagttgattgcagatattagcaagaagggtgctgcagttatccacttgttcatccgcaggccagcaaaggttcagacacagcagggtgataaggagactgttgttacagttgttactcccaaagacaatgataacctccaaacagatgctttgaaccttgcgaaaccagctaagggtaaacctgctccagttgagccaatcattgctaatggaaaggtgaaattgtctcctgctgtgatggaaatgatatactcaacaatttctggtctagaaaacgggtaccttcccgtaatgtcaacagagggttcagggggagtctatttcatgaaggattcttcaggtgaaagcaatgttgcagtattcaagcctatagatgaggaaccaatggcaaagaataaccccaggggccttcctttgtcaattgatggtgaggggttgaaaaggggaacgcgagtaggggaaggtgcattaagggaggttgcagcatatattcttgaccatccagtttatggatgtaaatcgtgtgatgttcctggattttctggtgtaccacccacagcgttggtccgttgtttccatatggggaagggatctaaggttggatcattgcagctgtttgtagataacaatggcagttgtgaggatatgggccctcgagctttcccagttaaagaggttcagaagattgccatactggatattaggttggcaaatgctgatcgtcatgctgggaacatattagtttgccaagatggagaagatcacttgaagttgattccaattgatcatgggtactgcctgccagagaagtttgaagattgtacctttgagtggctctactggccccaagcccgcgaacccttcggtccagaaaccgcagcatacattggatcactagatgctgacaaagacgttgcgcttctcaagttccacgggtgggcgctatctccccagtgtgcccgagttctgcgcatcagcacaatgcttttgaagaagggggcagagagaggtctaacgccttatgacatcggcagcatcttatgcaggcaaacagtcaaaaaagaatctgaaatcgaggccatcatagaggaagcagaggatgccgtccttccaggaactagtgaggagacattcttggagaccatctcggagatcatggactttcaccttgataagcttgctgtgaagttaaagaagttctga
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| Protein seq | MSSAGIATLSPLLDQFCFVPHGEPRSQQLDSIVIFLAMPGVAPMPMRVLHSDSVASVKLRIQQSKGFVTTKQRLVFSGHELSLNNSHVRDYGLTDGNVLHLVVRLADLRAISIETANGKKFQFQVESRCNVGYLKDKLSAESGQQLGSLKDQRLVFDGEELEDNQLIADISKKGAAVIHLFIRRPAKVQTQQGDKETVVTVVTPKDNDNLQTDALNLAKPAKGKPAPVEPIIANGKVKLSPAVMEMIYSTISGLENGYLPVMSTEGSGGVYFMKDSSGESNVAVFKPIDEEPMAKNNPRGLPLSIDGEGLKRGTRVGEGALREVAAYILDHPVYGCKSCDVPGFSGVPPTALVRCFHMGKGSKVGSLQLFVDNNGSCEDMGPRAFPVKEVQKIAILDIRLANADRHAGNILVCQDGEDHLKLIPIDHGYCLPEKFEDCTFEWLYWPQAREPFGPETAAYIGSLDADKDVALLKFHGWALSPQCARVLRISTMLLKKGAERGLTPYDIGSILCRQTVKKESEIEAIIEEAEDAVLPGTSEETFLETISEIMDFHLDKLAVKLKKF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0012860 | OsLiXu_02g0012860.01 | Chr02 | 11016185 | 11019433 | - | NAM | ||
| CDS seq | atgtcgtcggccggtatagccacactcagccccctgctggaccagttttgttttgtgccccatggtgagccccggtcgcagcagctggattctattgtcatttttcttgccatgcccggggtggcacccatgccaatgcgtgtcctgcactcagactctgttgcctcggtcaagctccgcatccagcagtccaagggctttgtcactaccaagcagcggctggtgttcagtgggcatgagctgtcactaaacaactcccatgtcagggattatggacttaccgatggaaatgtgcttcatcttgtcgtgcggttggctgacctccgtgcgataagcattgagactgccaatgggaagaaatttcagttccaggtggagagtcgctgcaatgttgggtatctcaaggacaagctctcagctgagagcggacagcaacttgggagtctcaaggaccaaaggcttgtgtttgacggtgaagagcttgaggataaccagttgattgcagatattagcaagaagggtgctgcagttatccacttgttcatccgcaggccagcaaaggttcagacacagcagggtgataaggagactgttgttacagttgttactcccaaagacaatgataacctccaaacagatgctttgaaccttgcgaaaccagctaagggtaaacctgctccagttgagccaatcattgctaatggaaaggtgaaattgtctcctgctgtgatggaaatgatatactcaacaatttctggtctagaaaacgggtaccttcccgtaatgtcaacagagggttcagggggagtctatttcatgaaggattcttcaggtgaaagcaatgttgcagtattcaagcctatagatgaggaaccaatggcaaagaataaccccaggggccttcctttgtcaattgatggtgaggggttgaaaaggggaacgcgagtaggggaaggtgcattaagggaggttgcagcatatattcttgaccatccagtttatggatgtaaatcgtgtgatgttcctggattttctggtgtaccacccacagcgttggtccgttgtttccatatggggaagggatctaaggttggatcattgcagctgtttgtagataacaatggcagttgtgaggatatgggccctcgagctttcccagttaaagaggttcagaagattgccatactggatattaggttggcaaatgctgatcgtcatgctgggaacatattagtttgccaagatggagaagatcacttgaagttgattccaattgatcatgggtactgcctgccagagaagtttgaagattgtacctttgagtggctctactggccccaagcccgcgaacccttcggtccagaaaccgcagcatacattggatcactagatgctgacaaagacgttgcgcttctcaagttccacgggtgggcgctatctccccagtgtgcccgagttctgcgcatcagcacaatgcttttgaagaagggggcagagagaggtctaacgccttatgacatcggcagcatcttatgcaggcaaacagtcaaaaaagaatctgaaatcgaggccatcatagaggaagcagaggatgccgtccttccaggaactagtgaggagacattcttggagaccatctcggagatcatggactttcaccttgataagcttgctgtgaagttaaagaagttctga
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| Protein seq | MSSAGIATLSPLLDQFCFVPHGEPRSQQLDSIVIFLAMPGVAPMPMRVLHSDSVASVKLRIQQSKGFVTTKQRLVFSGHELSLNNSHVRDYGLTDGNVLHLVVRLADLRAISIETANGKKFQFQVESRCNVGYLKDKLSAESGQQLGSLKDQRLVFDGEELEDNQLIADISKKGAAVIHLFIRRPAKVQTQQGDKETVVTVVTPKDNDNLQTDALNLAKPAKGKPAPVEPIIANGKVKLSPAVMEMIYSTISGLENGYLPVMSTEGSGGVYFMKDSSGESNVAVFKPIDEEPMAKNNPRGLPLSIDGEGLKRGTRVGEGALREVAAYILDHPVYGCKSCDVPGFSGVPPTALVRCFHMGKGSKVGSLQLFVDNNGSCEDMGPRAFPVKEVQKIAILDIRLANADRHAGNILVCQDGEDHLKLIPIDHGYCLPEKFEDCTFEWLYWPQAREPFGPETAAYIGSLDADKDVALLKFHGWALSPQCARVLRISTMLLKKGAERGLTPYDIGSILCRQTVKKESEIEAIIEEAEDAVLPGTSEETFLETISEIMDFHLDKLAVKLKKF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0012860 | OsLiXu_02g0012860.03 | Chr02 | 11016163 | 11019457 | - | IsoSeq | ||
| CDS seq | atggtgagccccggtcgcagcagctggattctattgtcatttttcttgccatgcccggggtggcacccatgccaatgcgtgtcctgcactcagactctgttgcctcggtcaagctccgcatccagcagtccaagggctttgtcactaccaagcagcggctggtgttcagtgggcatgagctgt |
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| Protein seq | MVSPGRSSWILLSFFLPCPGWHPCQCVSCTQTLLPRSSSASSSPRALSLPSSGWCSVGMSC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 11019148 | 11019330 | - | OsLiXu_02g0012860.03 | OsLiXu_02g0012860.01,OsLiXu_02g0012860.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.662187 | 0.697671 | 1.294151 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0290500 | RBH | 0.930303 | 0.927145 | 2.838752 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g18840 | RBH | 0.612293 | 0.555399 | 0.684536 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0290500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0012850 | RBH | 0.434578 | 2.003153 | 3.623746 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0013050 | RBH | 0.097740 | 0.410460 | 1.940279 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0012890 | RBH | 0.321485 | 0.850938 | 5.792224 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0012720 | RBH | 0.040828 | 0.067542 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0012640 | RBH | 2.786798 | 6.550558 | 14.170203 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0171600 | RBH | 3.510964 | 4.171538 | 19.6649075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0012440 | RBH | 0.110242 | 0.181948 | 0.537825 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0184800 | RBH | 3.201534 | 3.4116415 | 39.7095015 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0013000 | RBH | 0.094391 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0012580 | RBH | 0.068315 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0013050 | RBH | 0.000000 | 7.076117 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0009330 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0012690 | RBH | 0.132262 | 1.553399 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G013030 | RBH | 0.384710 | 1.356869 | 1.415618 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0012820 | RBH | 0.350237 | 7.527499 | 3.566767 |
