Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0011490 | OGI:02008490 | 12/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:9493964-9494548 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttacatctcacacaccacggtgtatacaatcgggcttgatttgagaactttgaactgcctctgcatcttaaacgaccacgacttaactgcatcctgacatgcagacttcgtcgaaaacattgcgcccttgttgattgggccatcaccatagaaccatactgagtcatgcagctcgttctctccgatatatccaagatgttcacggttccatgatgctggaataggttggacttcgtactcttcatcatctgcctcctcatcgtcctcctgagccaagttagcttcatcctcacgagcattcctatcaaccctctcaatctcgtccactatagcatttatctcttccccttcatcgacttcacccgaaccatcttgttgcaccgtgctcgacatcgcaaccaccgtttgttcagcttgttcaatatgaaggctctgcttgtcaatgccgatattgtcttcattatgctgggagacttccacatgaaatgcacttgattgagcacatgcctctccctgcatatcggactggccgaacgaactgtttggtcgagccctccttggacaagcctgcaccaacatggccat
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| CDS seq | atggccatgttggtgcaggcttgtccaaggagggctcgaccaaacagttcgttcggccagtccgatatgcagggagaggcatgtgctcaatcaagtgcatttcatgtggaagtctcccagcataatgaagacaatatcggcattgacaagcagagccttcatattgaacaagctgaacaaacggtggttgcgatgtcgagcacggtgcaacaagatggttcgggtgaagtcgatgaaggggaagagataaatgctatagtggacgagattgagagggttgataggaatgctcgtgaggatgaagctaacttggctcaggaggacgatgaggaggcagatgatgaagagtacgaagtccaacctattccagcatcatggaaccgtgaacatcttggatatatcggagagaacgagctgcatgactcagtatggttctatggtgatggcccaatcaacaagggcgcaatgttttcgacgaagtctgcatgtcaggatgcagttaagtcgtggtcgtttaagatgcagaggcagttcaaagttctcaaatcaagcccgattgtatacaccgtggtgtgtgagatgtaa
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| Protein seq | MAMLVQACPRRARPNSSFGQSDMQGEACAQSSAFHVEVSQHNEDNIGIDKQSLHIEQAEQTVVAMSSTVQQDGSGEVDEGEEINAIVDEIERVDRNAREDEANLAQEDDEEADDEEYEVQPIPASWNREHLGYIGENELHDSVWFYGDGPINKGAMFSTKSACQDAVKSWSFKMQRQFKVLKSSPIVYTVVCEM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0011490 | OsLiXu_02g0011490.01 | Chr02 | 9493964 | 9494548 | - | NAM | ||
| CDS seq | atggccatgttggtgcaggcttgtccaaggagggctcgaccaaacagttcgttcggccagtccgatatgcagggagaggcatgtgctcaatcaagtgcatttcatgtggaagtctcccagcataatgaagacaatatcggcattgacaagcagagccttcatattgaacaagctgaacaaacggtggttgcgatgtcgagcacggtgcaacaagatggttcgggtgaagtcgatgaaggggaagagataaatgctatagtggacgagattgagagggttgataggaatgctcgtgaggatgaagctaacttggctcaggaggacgatgaggaggcagatgatgaagagtacgaagtccaacctattccagcatcatggaaccgtgaacatcttggatatatcggagagaacgagctgcatgactcagtatggttctatggtgatggcccaatcaacaagggcgcaatgttttcgacgaagtctgcatgtcaggatgcagttaagtcgtggtcgtttaagatgcagaggcagttcaaagttctcaaatcaagcccgattgtatacaccgtggtgtgtgagatgtaa
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| Protein seq | MAMLVQACPRRARPNSSFGQSDMQGEACAQSSAFHVEVSQHNEDNIGIDKQSLHIEQAEQTVVAMSSTVQQDGSGEVDEGEEINAIVDEIERVDRNAREDEANLAQEDDEEADDEEYEVQPIPASWNREHLGYIGENELHDSVWFYGDGPINKGAMFSTKSACQDAVKSWSFKMQRQFKVLKSSPIVYTVVCEM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0550500 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g11730 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0550500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0015450 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0020400 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0015460 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0017890 | SBH | 0.097468 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0011240 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0101200 | RBH | 0 | 0.0137585 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0011070 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0157000 | RBH | 0.012929 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0011570 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0011180 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0011550 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0020210 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0011170 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G011530 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0011340 | RBH | 0.0 | 0.0 | 0.0 |
