Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0011080 | OGI:02024770 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:9021782-9025582 | ||||||||
| Gene Symbol | RPBF, OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF | ||||||||||
| DNA seq | ttaagaaacaaaccaacggcaattaagcaatgtcacgaccaatgatgtacatttaattaactccccttaaacatgagtaccttttgcatggttccatgaggtcaatcaaacaaccccaactccaagctaattacaggtaaacgagcgacgatgacgacgacgacattcatttgtctagcaaaatttaaaactgtttcgacgaatttttccaaagagcgaactaatttgatccacggatcaaaaacgaactaaagcgatcgatgaagctgaagaaaaatcattccaagaagctagcaacaacttctggatgagatctctctccaaccttggcatggttgatttgattgagcttacatcatggccgagctgctgtcgatgaggccctgccatggcgttgctccggtggcagcggcggcgttgccgccgatgccgcctccagcgacgacgccgccggcggcgctgttccagccgtagaagtagtccggcctcgacgccgacgacgatacgccgccgccggtgtccttcgtcatcacagcttcgccaccgtcgccgccgccctgctgctcgtctgcaccaccaagcgccggcggccactggcctcctcccagccccgccatcacgctgccgtcctcgccggcgttcatcactccaccaccacctcctcccatcgcatgattggcgaactgcccctgcatcccatgctgcatcagagaaccagaaaatggcggcagcggcggcggcggcatcagcatgccattgccggcgccggtgatgagaggcgcgtagtagctgcctccgccgccgccattgccgcccatctgatggctgttgccgacgccgtcgaaaagccctccaactcccctcagcatgtccatgaacgacgtggtcgtcgacgacccaccaccaccgccgggagccgccaccgccgccgacaggttgccgaacgccccgaacgaccccagcgagaggcggtcgccggcggcggcggggagctcgaacccggtggacacgaaggtcgggagcacgttggggaagtccgcgcacggcgccgccatgggctccgactgcagcagcttgctgatcgccgacgacagcgccggcaccaccggtggcgcggcgcccaccgcaggagcaggaggagacgccgccgacgccgacgccgacgaggccgacgagcgcttgctcttgcggcagccgccgccgacggggacgttgcggagggagccgccctgggtccagtagcggcggcactcgcggcagaagtagcgcggctgcgccatgctgtagttgttgtagtagcagaacttggtcttgatggagttgcaccgggggcagcacgggctgctcttcttcatcatctccgccgcgctcttcaccgccaccgcctcctcctcctcgtgctgctccgccttggtcgtcttcaccaccgcgggcttctcctccaccggggataatgcgccgccgctcgccattgatcacctcctgcacacaatagccacaatggttcaaaattaagcacggtgagtgtctctacggtggtctctactggtagcattttattattggtattatcgtaggtagaaacatagaagcgataatgtgatatctcaatagttgatatatgagttctactattgttaaaaaaattattctattaccgatattatttgagatggtagtataaagatatagtatgatttattggattatagagaaggtgaaatgaataagttgattctactagctaccagtagagatcctatgcaaaacacatgaagcatggtatataaatgaatatgatcacatagttaattaattacattaccatatgaaaacttcaacaacaatcttacaatcatatggtgtgggagtggtcctttgttttctgtctttttttctatcttttttaataaaatgaacatcaatatgaggaggttgattctttttcactcggatctagaccaacaacttgaacacgcactgttttttttaggaaattaataggtttaatttaatatgcgacaaaataggcattaattcaatggtattttaatctttctgccacccgcgatttaaggaaatatgttgcgtcttatttttcttggattgtttcataactgttacttgcctacgaaaccaaaattgatgtgaagagaattcctaccaagaccttattttctatcacaacatacaatcatatggtgggagtggttctttcttttctttcattccttttccatattttcaaataaaaatgaacactggaattaatatggttgattttctacaaccagcaatagccacaatagttcaaagcatagtttatgtgtgtgtttatatttttgtgtgtgtgtgtgtgtgtttgtttgtttctgtgtgatcaaacaattaattaattatgttaccctatgaaaaccaagtataatcatatgtgggattttgctttctttcatttcctttccatattttgaaatagaaatgagtgctagaatagggaggttgattcctttttttttttcacgcggacttagcgcaagaaattgaacacagatttctttggaggaaattaatatgcttaatttaatatgtgacaaaataggcgttaattcgattatttttagctttctgtccacccgcgattcgaggaaacacgttatggcttattttcttggactgtttcataactgttgcttgcgtacgaccaaaactgacgagataagacaattcctagtaagacttattttctatgcgcgacaaatctatgcgtgtgacaactagctacagaattctcgtgcatacatggatgaacaaggaataatatgaggatttttttttgaaatagcgtacttattgatcgctcaccgcaaaatcaagagatgaagaggtttcaaaattaaactataataaagggaataccaaatcatttggatgcagcgttgatttctttcgaaacttttacaagtaactgaaccatagaccgagcaaaagaaacaaatcgatttgagatcatgctagctgaacaccatcctagaatcctagatatataggtagatggtgctggactatgaatttttgtacgcataccaagatcgatccatagctagatatataggaacccatatgtgttcatgtagatgcaaaagaacaaccgaatgaagtgaaacacatacaaatacatgtaatactcttgcgtatatatagaatctagttgcaaatagatcaagaaatagttaaatcaaacttcttgaagactaccaacaagactatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacaatcaaaagaagaaagcgaagatcttttcaacAaaaaaaaaggggagaaagtgaagacgccggagaaacataagtacctgttggtgagagatctagcttgcttgaaacaagcaaagtcgatcgaacggaggagtgaaccgagacgacgaagaagaaagaaaagctaagcgaaacgatgaagaagaggagcaggagcaggagggggagaaggaggagagcctcccctcctttaatagtagctatagacagacggagaggagagagccgtcgagagagatctaccccgcaagctagtgcaaacgatgcgtGgggcatgtgaggtagagtcgtagccagagaggggatgaa
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| CDS seq | atggcgagcggcggcgcattatccccggtggaggagaagcccgcggtggtgaagacgaccaaggcggagcagcacgaggaggaggaggcggtggcggtgaagagcgcggcggagatgatgaagaagagcagcccgtgctgcccccggtgcaactccatcaagaccaagttctgctactacaacaactacagcatggcgcagccgcgctacttctgccgcgagtgccgccgctactggacccagggcggctccctccgcaacgtccccgtcggcggcggctgccgcaagagcaagcgctcgtcggcctcgtcggcgtcggcgtcggcggcgtctcctcctgctcctgcggtgggcgccgcgccaccggtggtgccggcgctgtcgtcggcgatcagcaagctgctgcagtcggagcccatggcggcgccgtgcgcggacttccccaacgtgctcccgaccttcgtgtccaccgggttcgagctccccgccgccgccggcgaccgcctctcgctggggtcgttcggggcgttcggcaacctgtcggcggcggtggcggctcccggcggtggtggtgggtcgtcgacgaccacgtcgttcatggacatgctgaggggagttggagggcttttcgacggcgtcggcaacagccatcagatgggcggcaatggcggcggcggaggcagctactacgcgcctctcatcaccggcgccggcaatggcatgctgatgccgccgccgccgctgccgccattttctggttctctgatgcagcatgggatgcaggggcagttcgccaatcatgcgatgggaggaggtggtggtggagtgatgaacgccggcgaggacggcagcgtgatggcggggctgggaggaggccagtggccgccggcgcttggtggtgcagacgagcagcagggcggcggcgacggtggcgaagctgtgatgacgaaggacaccggcggcggcgtatcgtcgtcggcgtcgaggccggactacttctacggctggaacagcgccgccggcggcgtcgtcgctggaggcggcatcggcggcaacgccgccgctgccaccggagcaacgccatggcagggcctcatcgacagcagctcggccatgatgtaa
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| Protein seq | MASGGALSPVEEKPAVVKTTKAEQHEEEEAVAVKSAAEMMKKSSPCCPRCNSIKTKFCYYNNYSMAQPRYFCRECRRYWTQGGSLRNVPVGGGCRKSKRSSASSASASAASPPAPAVGAAPPVVPALSSAISKLLQSEPMAAPCADFPNVLPTFVSTGFELPAAAGDRLSLGSFGAFGNLSAAVAAPGGGGGSSTTTSFMDMLRGVGGLFDGVGNSHQMGGNGGGGGSYYAPLITGAGNGMLMPPPPLPPFSGSLMQHGMQGQFANHAMGGGGGGVMNAGEDGSVMAGLGGGQWPPALGGADEQQGGGDGGEAVMTKDTGGGVSSSASRPDYFYGWNSAAGGVVAGGGIGGNAAAATGATPWQGLIDSSSAMM |
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| Function | Dof zinc finger protein 3 [UniProtKB/Swiss-Prot:Q6K537] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0011080 | OsLiXu_02g0011080.01 | Chr02 | 9021782 | 9025582 | - | NAM | ||
| CDS seq | atggcgagcggcggcgcattatccccggtggaggagaagcccgcggtggtgaagacgaccaaggcggagcagcacgaggaggaggaggcggtggcggtgaagagcgcggcggagatgatgaagaagagcagcccgtgctgcccccggtgcaactccatcaagaccaagttctgctactacaacaactacagcatggcgcagccgcgctacttctgccgcgagtgccgccgctactggacccagggcggctccctccgcaacgtccccgtcggcggcggctgccgcaagagcaagcgctcgtcggcctcgtcggcgtcggcgtcggcggcgtctcctcctgctcctgcggtgggcgccgcgccaccggtggtgccggcgctgtcgtcggcgatcagcaagctgctgcagtcggagcccatggcggcgccgtgcgcggacttccccaacgtgctcccgaccttcgtgtccaccgggttcgagctccccgccgccgccggcgaccgcctctcgctggggtcgttcggggcgttcggcaacctgtcggcggcggtggcggctcccggcggtggtggtgggtcgtcgacgaccacgtcgttcatggacatgctgaggggagttggagggcttttcgacggcgtcggcaacagccatcagatgggcggcaatggcggcggcggaggcagctactacgcgcctctcatcaccggcgccggcaatggcatgctgatgccgccgccgccgctgccgccattttctggttctctgatgcagcatgggatgcaggggcagttcgccaatcatgcgatgggaggaggtggtggtggagtgatgaacgccggcgaggacggcagcgtgatggcggggctgggaggaggccagtggccgccggcgcttggtggtgcagacgagcagcagggcggcggcgacggtggcgaagctgtgatgacgaaggacaccggcggcggcgtatcgtcgtcggcgtcgaggccggactacttctacggctggaacagcgccgccggcggcgtcgtcgctggaggcggcatcggcggcaacgccgccgctgccaccggagcaacgccatggcagggcctcatcgacagcagctcggccatgatgtaa
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| Protein seq | MASGGALSPVEEKPAVVKTTKAEQHEEEEAVAVKSAAEMMKKSSPCCPRCNSIKTKFCYYNNYSMAQPRYFCRECRRYWTQGGSLRNVPVGGGCRKSKRSSASSASASAASPPAPAVGAAPPVVPALSSAISKLLQSEPMAAPCADFPNVLPTFVSTGFELPAAAGDRLSLGSFGAFGNLSAAVAAPGGGGGSSTTTSFMDMLRGVGGLFDGVGNSHQMGGNGGGGGSYYAPLITGAGNGMLMPPPPLPPFSGSLMQHGMQGQFANHAMGGGGGGVMNAGEDGSVMAGLGGGQWPPALGGADEQQGGGDGGEAVMTKDTGGGVSSSASRPDYFYGWNSAAGGVVAGGGIGGNAAAATGATPWQGLIDSSSAMM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0252400 | RBH | 0.0 | 0.0 | 5.381293 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g15350 | RBH | 0.0 | 0.0 | 1.217474 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0252400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0010880 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0011000 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0010850 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0010710 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0010810 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0142200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0010570 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0149000 | RBH | 0 | 0 | 0.006892 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0011110 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0010720 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0011120 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0010750 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G010970 | RBH | 0.0 | 0.0 | 0.606569 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0010760 | RBH | 0.0 | 0.0 | 0.0 |
