Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0009350 | OGI:02020360 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:7040128-7042618 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atctagtctcatatgtcagtgaactaacattttttttgcaagttggtctgaagggaaagttcatggctactgctcttttgctgtatggtttacatccacatatttgatggactctcttccacactcaaatttaatttactaatttagtgatgtatatataggcagtaggcacatagcatacttgagcatgttctacttcttctagccattgatttgttccagagatttggagattgttcagtttttgtttggtttcttgtaaatttaagtagcacagagtggagatgcaggaaggaaggaaaggggtgccatctctgctctcatctcagggagaatgcattgcatccaacatcacacaggttatatatatgcttaagtttctccttagttgcaaattttgctctttttgcaattagatttggtttaagtaaattctgtattcctgtctagcagctgattggttggacaccactgatagaattgaagaatattgctaagaaagatggcatagctgctcggctggttgggaagattgagccataccaacccctttcctctgtgaaggatcggagtgctctcaggtgattggtctaacctctctagatcatcttgatgtaccaagtttattcaagattattcaaggataatgtgaggttagaatttaaatagcaccaggccaacatgttgagttatgcagtttttagtgcaaacatattattcaaggaatggttatgcagtttttagtgcataacatattattcaaggattggttatgcagtttttcgcccaaaaaaagagttttgcagtttttagttcaaacaagagtcatttcaatagaaattacttactacgaagaatttatcatagaaacgatagattggcaaatgtttcttgttactaccacatggtagggataaagttattcccctcaaatttaccaacttttgacagcaatatgaatgaaaatccatcaaattgctatcatgacaagtatgaatgctgacttgcagattgattgaagatgcagaggagagaggcttaatctcacctggcatcacaacactagcaggggtcacaagcggcaatcttggtatcggagtggcgtttgttgctgctcagaaaggttacaaattcatcgctgtcatgcctgctaaactctcgatagataaacaaatcctgttgagatacctgggagttgaagtgattttggttggtaagaagcttagctccatggccctcgtattacaggtcagatgtaacatgctagtctcctgcagaccctgcactgaatggattcaaggggctacttgatagagttgaacagctgaagaaggatatggagaatgtgtttgttatagatcagttcaccaatcctgctaatcctgatgcgcacttcagatggacaggtaacatagatttattatttctttcaaagtaaaattgatgtagcagcgctagaaatcttagtagtactatagtagcagtgttgagtagcattataatattcttgtaactagacaattagacttactcccattatctaaaaaaaagacaattagacatactgtaatcctgcaaattatgaattacaatatggaaaccacgcatgaagcttagattgttgaagttagttaaacagtgtcactcatacagtaaatgctttgatatgattaaattttgttgccttttgtacggtcatgcttccatgcaatcagccaactctttgagtcttgactactacttgcaggtaacatatttgacctgaaatatttactgaactaaaattttgttctcaggacctgaaatatggaaagatacagcaggcaaagtggatatatttgtagctgcatctggttcaggaggcacagtgacaggcgtagggaggtatctcaagatgaagaatccatccataaagctgatatgtgttgaaccagctgaaagtgcagtaatttcaggtaacataaatgaccactatattgatatttgctctcctctcagcaatgccacacaaactgaatgtaaaactgagcaagtgagcttgtgtattatcacttgtaggaggtgaaccagcattccataacatccaaggcataggtccaggatttatcccagaaatattggacagatcacaaatagatgagatagtaacagtgaccactcaagaagctatgggcatggcaagaaggttggcaagggaagaaggattgctcgttggaatatcttcaggagccaacgcagctgccatcttgaaggcaagctctttcattttttttcagcaaacactacagtaatgatttattatagaaacatgattgtcaattacattgctcctctcaatttgtgtactgattgataggttgcagcaagggaggagaacaagggaaagatgatcgtgacgatgttctccagtggtggggagagatacctgaattcggagctatttgctcaggtgaaggaggaatgcatcaacatcaacaaggcattctgctga
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| CDS seq | atgcaggaaggaaggaaaggggtgccatctctgctctcatctcagggagaatgcattgcatccaacatcacacagctgattggttggacaccactgatagaattgaagaatattgctaagaaagatggcatagctgctcggctggttgggaagattgagccataccaacccctttcctctgtgaaggatcggagtgctctcagattgattgaagatgcagaggagagaggcttaatctcacctggcatcacaacactagcaggggtcacaagcggcaatcttggtatcggagtggcgtttgttgctgctcagaaaggttacaaattcatcgctgtcatgcctgctaaactctcgatagataaacaaatcctgttgagatacctgggagttgaagtgattttggttgaccctgcactgaatggattcaaggggctacttgatagagttgaacagctgaagaaggatatggagaatgtgtttgttatagatcagttcaccaatcctgctaatcctgatgcgcacttcagatggacaggaggtgaaccagcattccataacatccaaggcataggtccaggatttatcccagaaatattggacagatcacaaatagatgagatagtaacagtgaccactcaagaagctatgggcatggcaagaaggttggcaagggaagaaggattgctcgttgcagcaagggaggagaacaagggaaagatgatcgtgacgatgttctccagtggtggggagagatacctgaattcggagctatttgctcaggtgaaggaggaatgcatcaacatcaacaaggcattctgctga
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| Protein seq | MQEGRKGVPSLLSSQGECIASNITQLIGWTPLIELKNIAKKDGIAARLVGKIEPYQPLSSVKDRSALRLIEDAEERGLISPGITTLAGVTSGNLGIGVAFVAAQKGYKFIAVMPAKLSIDKQILLRYLGVEVILVDPALNGFKGLLDRVEQLKKDMENVFVIDQFTNPANPDAHFRWTGGEPAFHNIQGIGPGFIPEILDRSQIDEIVTVTTQEAMGMARRLAREEGLLVAAREENKGKMIVTMFSSGGERYLNSELFAQVKEECININKAFC |
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| Function | Cysteine synthase [UniProtKB/Swiss-Prot:Q9XEA8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0009350 | OsLiXu_02g0009350.01 | Chr02 | 7040128 | 7042618 | + | NAM | ||
| CDS seq | atgcaggaaggaaggaaaggggtgccatctctgctctcatctcagggagaatgcattgcatccaacatcacacagctgattggttggacaccactgatagaattgaagaatattgctaagaaagatggcatagctgctcggctggttgggaagattgagccataccaacccctttcctctgtgaaggatcggagtgctctcagattgattgaagatgcagaggagagaggcttaatctcacctggcatcacaacactagcaggggtcacaagcggcaatcttggtatcggagtggcgtttgttgctgctcagaaaggttacaaattcatcgctgtcatgcctgctaaactctcgatagataaacaaatcctgttgagatacctgggagttgaagtgattttggttgaccctgcactgaatggattcaaggggctacttgatagagttgaacagctgaagaaggatatggagaatgtgtttgttatagatcagttcaccaatcctgctaatcctgatgcgcacttcagatggacaggaggtgaaccagcattccataacatccaaggcataggtccaggatttatcccagaaatattggacagatcacaaatagatgagatagtaacagtgaccactcaagaagctatgggcatggcaagaaggttggcaagggaagaaggattgctcgttgcagcaagggaggagaacaagggaaagatgatcgtgacgatgttctccagtggtggggagagatacctgaattcggagctatttgctcaggtgaaggaggaatgcatcaacatcaacaaggcattctgctga
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| Protein seq | MQEGRKGVPSLLSSQGECIASNITQLIGWTPLIELKNIAKKDGIAARLVGKIEPYQPLSSVKDRSALRLIEDAEERGLISPGITTLAGVTSGNLGIGVAFVAAQKGYKFIAVMPAKLSIDKQILLRYLGVEVILVDPALNGFKGLLDRVEQLKKDMENVFVIDQFTNPANPDAHFRWTGGEPAFHNIQGIGPGFIPEILDRSQIDEIVTVTTQEAMGMARRLAREEGLLVAAREENKGKMIVTMFSSGGERYLNSELFAQVKEECININKAFC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.099118 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0222100 | RBH | 0.271814 | 0.262845 | 0.726627 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g12900 | RBH | 0.216860 | 0.219724 | 0.246521 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0222100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0009240 | RBH | 0.0 | 0.0 | 2.984509 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0009340 | RBH | 0.061919 | 0.000000 | 2.673978 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0009190 | RBH | 0.0 | 0.0 | 7.179621 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0008990 | RBH | 0.060646 | 0.261815 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0009130 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0114700 | RBH | 0.066406 | 10.466426 | 0.0583895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0008960 | RBH | 0.0 | 0.0 | 0.736234 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0118100 | RBH | 0.17198 | 7.645266 | 0.102741 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0009390 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0009040 | RBH | 0.000000 | 10.302170 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0009350 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0036510 | SBH | 6.765189 | 0.0 | 3.868095 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0009090 | RBH | 0.0 | 0.865575 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G009270 | RBH | 0.000000 | 0.000000 | 1.262835 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0009120 | RBH | 0.0 | 0.0 | 6.088768 |
