Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0008910 | OGI:02018940 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:6685986-6690450 | ||||||||
| Gene Symbol | HDAC2, OsHDAC2, HDA710, OsHDA710 | ||||||||||
| DNA seq | catcgcggcatcgcctcctctgcttcgcttccttctccaacaagcacccgaccacaacacacacgcgagctccactcgagagagagaaaaaaaaaacccaaccccgaattcggcggcggaggcggaggcggcgatggacccctcgtcggcgggcgcgggcgggaactcgctggcgtcggcgtcgtgcggcgacgcgcagaagcggcgggtgtgctacttctacgacccggaggtgggcaactactactacggtcaggggcacccgatgaagccccaccgggtgaggatgacccacgcgctgctcgcccactacggcctcctcgccccggccaagatgcaggtgctccgcccgctccccgcccgcgaccgcgacctctgccgcttccactccgacgactacgtcgccttcctccgcgccgtcaccccggagacccagctcgaccagatccgctccctccgccgcttcaacgtcggcgaggactgccccgtcttcgacggcctctacgcctactgccagacctacgcgggggcctccgtcggcgccgccgtcaagctcaaccacggcacccacgacatcgccatcaactggtccggcgggttgcaccacgccaagaagtccgaggcctccggcttctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaagctccatgaggtgacgtcatcctattccgctcgtacttgtgttcttacttgtgtttgttcgTttttttttttttgggttcgtttaatgtttcgaatagattaggagtagtactatttggatgggtggtttgtttaatttttcgaatagatagattacttgatgtgtaagttgggtgggtcaatgaagacggaagcaaaaatcatcttgacttctttctcttcagttgctctgattttgtcgtgtacagttcgatcgatcttccgctagattttgatcggtaggaaatattaatcatctgcaaatgtaaatgaaatggctatctgtagtcagcaatcgattgggttaactttttgctcaacttaaatctcatatacactattcgttacgcgattacacattgtctgaatagtatgtcatattggcacgtgcagaattatgtataacaaatttattcagatttttgttttcctggataaaagctcatgtacgttgatgaatcatgctgaatgtgtgttagtgtgtactccctccgtttcatattataagattttctagcattgctaacatttatatagatgttaataaatctatacacaatgtgagtaatgctagaaagttttataatatgaaacggaggaagtatgtatttctagttgatataatgatgtcccaaagagagaaatgatatgacgacgaacttgctgcgtttgttattaaatttgcccatgatgtatactgttaaagctatatactccgatgtacagaattttcgttggacgattcatgataagagattgatttgattgaaacgtattcagaacaagaggtgactgattagacagatctgaagaatggatgttgcgtaaagacaatcctagattatcatgaacagttgaaagtttgaaaacagatcagatgttttttttccccattaggtcgagttgtcttcttgtgctgaaccattaatatgctgtcttcatatttacagcgagttctgtatattgatattgatatccatcatggagatggagttgaggaggcattctacacaacaaacagggttatgacagtctcatttcacaagtttggggattatttcccgggaacaggggatatccgtgacattgggtattcagaggggaagtattactgcctgaatgtcccgctggatgatgggattgatgatgacagctaccagtccatcttcaagccgatcatcagcaaagtcatggagatgtatcgtcctggtgcagtcgtgcttcagtgcggcgctgattcgttgtccggtgataggttgggctgtttcaatctctcagggaaaggtcatgcagaatgtgtaaagttcatgaggtctttcaatgttccgttgcttcttcttggtggtggtggatataccataagaaatgttgcacgctgctggtgttacgaggtatctatactttcccccgtttttttttccttatgcctttaacaaacaattaattaattctattaattatggatgacaaagcaaagccatgagctcggtaatgtgttagaacctaatttgcttttgtatttccactttgttccatgctcagcatcaagaacttgtcttctagtagttggtacctactgcctggctttgtttattgatccatgttgctgtaattttacaatcaccaaactaagattttggtttgcactgagcagatgactgaaatgcacagaacacctatcgcccatttacatgtaatgcttaatgtatttattttctaccctgtttcattcaaatgcattaatttgtgagaacttgtgcagtaacaaatcatcctgtgtttctcaaagcattaaaagggaaaccttattacttaggatgagtcccggaaaatgctagctaactgttaacccttgcaaaatcatatgcttcaggccaccacctgttcctcggttggctatttcatcagagatgtctttaataaattaagcaatccaaaatctggtgtctctttggaccttgcaagcctgcgttcgtttccttttgtgaatttataacctgaacacacagcaggctaaacatggcgaataagtgtgaatggctgcacttatgcttgctggagtaaattgtttctctcttatatcaggaacatctgttgctacagctatgattttatcctctgattgttttttttttatttgtccagacaggagttgcacttggtgaagagctacgggagaagttgccctacaacgagtattatgaatattttggtccagaatacagtcttttcgttgcagcaagtaacatggagaacagaaatacaaacaagcaattggaggaaataaaatgcaacattctggacaatctttcaaaacttcaacatgctcctagtgtccaatttgaagagcgaattcctgaaacaaagttacctgaggtgagtctccaggcttcctaatataagcatgaaaatgatgtcttggaagggataactcaagggctgactgaatgtatttgtgtcctgtgcatatgtgctcattattcagccagatgaagatcaagaggatccagatgaaaggcacgaccctgactctgatatggtattggatgatcacaaacctatgggacactcagcaaggtatctatttttccttttttttaaagctgtattaaattttgtataattctgtgccctgcctcatgttatattttcattttagaagccttattcacaacatcgaagttaagagagaaatcactgaatcagagaccaaagatcaggtactttctcatctcagttcattccaataagcggttctgtcctttctcatgcgtaaaattcaagacacgaagtccaccattttattttgagatgtctcctttttagctgaatctttagaactaaccgtatacttactccattcttttattaacatgcacccttttgtttaaagaaggtggcattccccttttaggtttatttatgtacatgctccgtttcatattataagtcgtttgaatttttttctagtcaaatttttttaagtttgtccaaatttataaaaaattatgttagtattttcaacataaaacaaatatgtatatagtgttagatttaataaaactagtatggtattttagatgttgctatttttttctatagatttggtcaaacttagttaagtttgattaggaaataggtcacatgacttataatatgaaagtatggaatggcgggagtaacaatgaggttttctttatagaattctgttcttctggcttgctgctatatgtgaattataatcttatccatatcggtgctagaaacatagtgaaattctcttgtgcgaggaagactgtgatgctgatgaaaatattctgctcatcatagatgtattgacattttcatctgaatgaaatttaaggcggcataggttatacctttttttatctcgcaggaTtttttttttttggttgtgcatagtctcatccagattatttagaatctaccttgcatttatgcgaaacgagccctttgaattttttgcagcttggactttgtggtatctttgtgtgatcttttgttgaactaacaccttctgatttacacattctgcagcatggtaagagattaacaactgaacataaaggaccagaaccgatggcagacgatcttggttcctccaagcaagctcctgtaagtcgtcgtcttctctatccatctgcaaatccatagcaaaagctctgcattgcctaatgcctatatggatatcgaattatagaacaccatggttaatctgctctaacaa
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| CDS seq | atggacccctcgtcggcgggcgcgggcgggaactcgctggcgtcggcgtcgtgcggcgacgcgcagaagcggcgggtgtgctacttctacgacccggaggtgggcaactactactacggtcaggggcacccgatgaagccccaccgggtgaggatgacccacgcgctgctcgcccactacggcctcctcgccccggccaagatgcaggtgctccgcccgctccccgcccgcgaccgcgacctctgccgcttccactccgacgactacgtcgccttcctccgcgccgtcaccccggagacccagctcgaccagatccgctccctccgccgcttcaacgtcggcgaggactgccccgtcttcgacggcctctacgcctactgccagacctacgcgggggcctccgtcggcgccgccgtcaagctcaaccacggcacccacgacatcgccatcaactggtccggcgggttgcaccacgccaagaagtccgaggcctccggcttctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaagctccatgagcgagttctgtatattgatattgatatccatcatggagatggagttgaggaggcattctacacaacaaacagggttatgacagtctcatttcacaagtttggggattatttcccgggaacaggggatatccgtgacattgggtattcagaggggaagtattactgcctgaatgtcccgctggatgatgggattgatgatgacagctaccagtccatcttcaagccgatcatcagcaaagtcatggagatgtatcgtcctggtgcagtcgtgcttcagtgcggcgctgattcgttgtccggtgataggttgggctgtttcaatctctcagggaaaggtcatgcagaatgtgtaaagttcatgaggtctttcaatgttccgttgcttcttcttggtggtggtggatataccataagaaatgttgcacgctgctggtgttacgagacaggagttgcacttggtgaagagctacgggagaagttgccctacaacgagtattatgaatattttggtccagaatacagtcttttcgttgcagcaagtaacatggagaacagaaatacaaacaagcaattggaggaaataaaatgcaacattctggacaatctttcaaaacttcaacatgctcctagtgtccaatttgaagagcgaattcctgaaacaaagttacctgagccagatgaagatcaagaggatccagatgaaaggcacgaccctgactctgatatggtattggatgatcacaaacctatgggacactcagcaagaagccttattcacaacatcgaagttaagagagaaatcactgaatcagagaccaaagatcagcatggtaagagattaacaactgaacataaaggaccagaaccgatggcagacgatcttggttcctccaagcaagctcctgtaagtcgtcgtcttctctatccatctgcaaatccatag
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| Protein seq | MDPSSAGAGGNSLASASCGDAQKRRVCYFYDPEVGNYYYGQGHPMKPHRVRMTHALLAHYGLLAPAKMQVLRPLPARDRDLCRFHSDDYVAFLRAVTPETQLDQIRSLRRFNVGEDCPVFDGLYAYCQTYAGASVGAAVKLNHGTHDIAINWSGGLHHAKKSEASGFCYVNDIVLAILELLKLHERVLYIDIDIHHGDGVEEAFYTTNRVMTVSFHKFGDYFPGTGDIRDIGYSEGKYYCLNVPLDDGIDDDSYQSIFKPIISKVMEMYRPGAVVLQCGADSLSGDRLGCFNLSGKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGEELREKLPYNEYYEYFGPEYSLFVAASNMENRNTNKQLEEIKCNILDNLSKLQHAPSVQFEERIPETKLPEPDEDQEDPDERHDPDSDMVLDDHKPMGHSARSLIHNIEVKREITESETKDQHGKRLTTEHKGPEPMADDLGSSKQAPVSRRLLYPSANP |
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| Function | Histone deacetylase 2 [UniProtKB/Swiss-Prot:Q6YV04] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0008910 | OsLiXu_02g0008910.01 | Chr02 | 6685986 | 6690450 | + | NAM | ||
| CDS seq | atggacccctcgtcggcgggcgcgggcgggaactcgctggcgtcggcgtcgtgcggcgacgcgcagaagcggcgggtgtgctacttctacgacccggaggtgggcaactactactacggtcaggggcacccgatgaagccccaccgggtgaggatgacccacgcgctgctcgcccactacggcctcctcgccccggccaagatgcaggtgctccgcccgctccccgcccgcgaccgcgacctctgccgcttccactccgacgactacgtcgccttcctccgcgccgtcaccccggagacccagctcgaccagatccgctccctccgccgcttcaacgtcggcgaggactgccccgtcttcgacggcctctacgcctactgccagacctacgcgggggcctccgtcggcgccgccgtcaagctcaaccacggcacccacgacatcgccatcaactggtccggcgggttgcaccacgccaagaagtccgaggcctccggcttctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaagctccatgagcgagttctgtatattgatattgatatccatcatggagatggagttgaggaggcattctacacaacaaacagggttatgacagtctcatttcacaagtttggggattatttcccgggaacaggggatatccgtgacattgggtattcagaggggaagtattactgcctgaatgtcccgctggatgatgggattgatgatgacagctaccagtccatcttcaagccgatcatcagcaaagtcatggagatgtatcgtcctggtgcagtcgtgcttcagtgcggcgctgattcgttgtccggtgataggttgggctgtttcaatctctcagggaaaggtcatgcagaatgtgtaaagttcatgaggtctttcaatgttccgttgcttcttcttggtggtggtggatataccataagaaatgttgcacgctgctggtgttacgagacaggagttgcacttggtgaagagctacgggagaagttgccctacaacgagtattatgaatattttggtccagaatacagtcttttcgttgcagcaagtaacatggagaacagaaatacaaacaagcaattggaggaaataaaatgcaacattctggacaatctttcaaaacttcaacatgctcctagtgtccaatttgaagagcgaattcctgaaacaaagttacctgagccagatgaagatcaagaggatccagatgaaaggcacgaccctgactctgatatggtattggatgatcacaaacctatgggacactcagcaagaagccttattcacaacatcgaagttaagagagaaatcactgaatcagagaccaaagatcagcatggtaagagattaacaactgaacataaaggaccagaaccgatggcagacgatcttggttcctccaagcaagctcctgtaagtcgtcgtcttctctatccatctgcaaatccatag
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| Protein seq | MDPSSAGAGGNSLASASCGDAQKRRVCYFYDPEVGNYYYGQGHPMKPHRVRMTHALLAHYGLLAPAKMQVLRPLPARDRDLCRFHSDDYVAFLRAVTPETQLDQIRSLRRFNVGEDCPVFDGLYAYCQTYAGASVGAAVKLNHGTHDIAINWSGGLHHAKKSEASGFCYVNDIVLAILELLKLHERVLYIDIDIHHGDGVEEAFYTTNRVMTVSFHKFGDYFPGTGDIRDIGYSEGKYYCLNVPLDDGIDDDSYQSIFKPIISKVMEMYRPGAVVLQCGADSLSGDRLGCFNLSGKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGEELREKLPYNEYYEYFGPEYSLFVAASNMENRNTNKQLEEIKCNILDNLSKLQHAPSVQFEERIPETKLPEPDEDQEDPDERHDPDSDMVLDDHKPMGHSARSLIHNIEVKREITESETKDQHGKRLTTEHKGPEPMADDLGSSKQAPVSRRLLYPSANP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.131684 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0215200 | RBH | 0.519670 | 0.386979 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g12380 | RBH | 0.349805 | 0.224332 | 0.032773 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0215200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0008780 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0008870 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0008650 | SBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0008570 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0008700 | RBH | 0.000000 | 0.000000 | 0.995969 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0108100 | RBH | 0.161423 | 3.0746625 | 7.5370865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0008530 | RBH | 0.0 | 0.215447 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0112200 | RBH | 0.7540965 | 10.1999465 | 0.285618 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0008960 | RBH | 0.0 | 0.071602 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0008630 | RBH | 0.0 | 16.964138 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0008930 | RBH | 0.0 | 3.707718 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0020980 | SBH | 1.289935 | 2.317423 | 0.967358 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0008680 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G008810 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0008730 | RBH | 0.000000 | 0.897814 | 1.958388 |
