Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0007620 | OGI:02016210 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:5707000-5708591 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gccatggctgtgaatgagaaccgcagaatccttgttcgagaaagagagtaaaatcgatacatcatatgcacagaccagccagctgtcgatcggcaaatggcccgatccacaaacttcaatccgagcaagcacacccgtccttggaaaatgactcctcctaattacatgcaaatcaccatgctttattaattactaattacatgctttaaacgtaattagcgcgcatgcaacaaacgaagagatcgaagcaaagtgatggatgatcgatcactcgaggggatcgccgccgtcggccttgtgcacggtgacgctgagcacgtggtcgccgtcgccgtcgtcgacgtcgccggcgccggagccggcggagcggagcgcgcggaagaagcaggtgtcgccgacggcgaggccgttgtcggcgcagaaccggtgccagccgtaccggagcaccgcgcgctcgcggcgcggccgcctgcccttggtgtgcttcagcctcaccgtccacgacctcccccgcatccgcagcaccaccttctcccgcgccgcgtacccgtgcgcctcctggaactctaccggcacgttctgctccgccgccgccgccgccatcgccgccggtgaccggcgcccggttggttggttagttagctagctagccagccagttggcaaaacaacaaacagctggtgggcgagggcggatcgtggagctcaccaggtactgtgcctgcttcttccccaggttgccctgccgcagcgtcaccacgaactgcgacgtcgccgccgcctcaccgcggccgtcgttgccgtcgtcgtcgctgctgcttccgctgcctgcacatgtcagccatgtcatgtcagggcgagcgagcgaggcgcgcgccgcgcggcgaggttatgttaccggcggcgtcgtggtaggcacggcggcacatggtcccgtcgtcgaagacggtgacggtgaacgcggcggcgccgtcgtagcggaagacgaggaggtccccgtcgcgcaggccatgggcacgggcgaaccgcagccagccgcggcccaggtacgcgccgccgtcgtcggcgaccaccttcacgtcccacatgcggccgcgccgccgccgccccacgcctgcgaccagcagcttcgcgtcccggagctctcgctcctccccctccagctccctcgcgaactcgtcaggcagcttctgcatcgacatcaccatggatcgatcaaacactagcagcagcaaagctacaagaaaccaaaacacacacgaaaagaaaagaaagaatcgatAaaaaaaaagttttaccagtttggttctggaggatccgggctggatgatcgtgaagaactcgaagttcgccaagcgaagattactcatctgctcctccatctttgagattgatcgagaggtttagcaacaacaataagacagtggaaggcaactcgatcaaaatggtggcatagggtgggtgtgctgaacaaagcgcctgatcatctcatgcctcctacgaagttcacttcgtgaaatgaagtgaagaagaagaagaagaagaagaagaagaagaaaggcttcaagctagctggagacctgcagttttgtg
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| CDS seq | atggcggcggcggcggcggagcagaacgtgccggtagagttccaggaggcgcacgggtacgcggcgcgggagaaggtggtgctgcggatgcgggggaggtcgtggacggtgaggctgaagcacaccaagggcaggcggccgcgccgcgagcgcgcggtgctccggtacggctggcaccggttctgcgccgacaacggcctcgccgtcggcgacacctgcttcttccgcgcgctccgctccgccggctccggcgccggcgacgtcgacgacggcgacggcgaccacgtgctcagcgtcaccgtgcacaaggccgacggcggcgatcccctcgagtga |
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| Protein seq | MAAAAAEQNVPVEFQEAHGYAAREKVVLRMRGRSWTVRLKHTKGRRPRRERAVLRYGWHRFCADNGLAVGDTCFFRALRSAGSGAGDVDDGDGDHVLSVTVHKADGGDPLE |
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| Function | B3 domain-containing protein LOC_Os02g10420 [UniProtKB/Swiss-Prot:A3A463] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0007620 | OsLiXu_02g0007620.01 | Chr02 | 5707267 | 5707602 | - | NAM | ||
| CDS seq | atggcggcggcggcggcggagcagaacgtgccggtagagttccaggaggcgcacgggtacgcggcgcgggagaaggtggtgctgcggatgcgggggaggtcgtggacggtgaggctgaagcacaccaagggcaggcggccgcgccgcgagcgcgcggtgctccggtacggctggcaccggttctgcgccgacaacggcctcgccgtcggcgacacctgcttcttccgcgcgctccgctccgccggctccggcgccggcgacgtcgacgacggcgacggcgaccacgtgctcagcgtcaccgtgcacaaggccgacggcggcgatcccctcgagtga
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| Protein seq | MAAAAAEQNVPVEFQEAHGYAAREKVVLRMRGRSWTVRLKHTKGRRPRRERAVLRYGWHRFCADNGLAVGDTCFFRALRSAGSGAGDVDDGDGDHVLSVTVHKADGGDPLE |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0007620 | OsLiXu_02g0007620.02 | Chr02 | 5707000 | 5708591 | - | IsoSeq | ||
| CDS seq | atggcctgcgcgacggggacctcctcgtcttccgctacgacggcgccgccgcgttcaccgtcaccgtcttcgacgacgggaccatgtgccgccgtgcctaccacgacgccgccgcagcggaagcagcagcgacgacgacggcaacgacggccg |
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| Protein seq | MACATGTSSSSATTAPPRSPSPSSTTGPCAAVPTTTPPQRKQQRRRRQRRP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.233605 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0197750 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g10420 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0197750 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0007420 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0007570 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0007350 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0007310 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0007380 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0091900 | RBH | 0.0493675 | 0.027048 | 0.984465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0007320 | RBH | 0.0 | 0.0 | 0.167150 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0095100 | RBH | 0.0626215 | 0 | 2.1535875 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0007730 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0007340 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0007630 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0007380 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G007480 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0007480 | RBH | 0.0 | 0.0 | 2.336057 |
