Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0006160 | OGI:02013220 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:4468987-4469740 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tatgagtatgaaaattcacaagttgctgtgcaagcaacatgataggcataaactacacaatacctactactgcaagaaaaactacagaatagtacagagttaacgccgcaagattatgtgaaaagggaaacttgtatgcatgctttcgtttcttctttggttacaacagcagaaagaagcatgcaaaatgtacagctaaaactagtacactacacatcatgaccaaagtaaaggcatttagccgaacacctaacgggggggccaaaccttacagagtttacatgggggttgcgtcgccaccacggcgggtgcgcgattggcagcgcctttgctcccttctcacggcaaggatttctcgccatcagctcgcggaggcggagacggcggcgcggcagacggggcaggcggccgccctggcgagccaccggtcgacgcaggcggcgtggaacgcgtggccgcaggcgggcagcgcgcgccaccgctcgcccgcgcacgcggcctcaaggcaaacagcgcagagctccggcgaggcggaggcggaggcggacgcggcgaagcagggaaggaagcggaggtccgcgggggagaggccggcgcgggagggcgtgtaagaggtctccgggacgcggtaccggctcctcccggccccgccgtggcgctggttccggaacgcccgggccgcgacgacgaggtggagcagcaggatggcggccgccgcggcgaagaggaggaacagcgcgagcgcggcggccat
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| CDS seq | atggccgccgcgctcgcgctgttcctcctcttcgccgcggcggccgccatcctgctgctccacctcgtcgtcgcggcccgggcgttccggaaccagcgccacggcggggccgggaggagccggtaccgcgtcccggagacctcttacacgccctcccgcgccggcctctcccccgcggacctccgcttccttccctgcttcgccgcgtccgcctccgcctccgcctcgccggagctctgcgctgtttgccttgaggccgcgtgcgcgggcgagcggtggcgcgcgctgcccgcctgcggccacgcgttccacgccgcctgcgtcgaccggtggctcgccagggcggccgcctgccccgtctgccgcgccgccgtctccgcctccgcgagctga |
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| Protein seq | MAAALALFLLFAAAAAILLLHLVVAARAFRNQRHGGAGRSRYRVPETSYTPSRAGLSPADLRFLPCFAASASASASPELCAVCLEAACAGERWRALPACGHAFHAACVDRWLARAAACPVCRAAVSASAS |
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| Function | NEP1-interacting protein-like 2 [UniProtKB/Swiss-Prot:Q8LBA0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0006160 | OsLiXu_02g0006160.01 | Chr02 | 4468987 | 4469740 | - | NAM | ||
| CDS seq | atggccgccgcgctcgcgctgttcctcctcttcgccgcggcggccgccatcctgctgctccacctcgtcgtcgcggcccgggcgttccggaaccagcgccacggcggggccgggaggagccggtaccgcgtcccggagacctcttacacgccctcccgcgccggcctctcccccgcggacctccgcttccttccctgcttcgccgcgtccgcctccgcctccgcctcgccggagctctgcgctgtttgccttgaggccgcgtgcgcgggcgagcggtggcgcgcgctgcccgcctgcggccacgcgttccacgccgcctgcgtcgaccggtggctcgccagggcggccgcctgccccgtctgccgcgccgccgtctccgcctccgcgagctga
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| Protein seq | MAAALALFLLFAAAAAILLLHLVVAARAFRNQRHGGAGRSRYRVPETSYTPSRAGLSPADLRFLPCFAASASASASPELCAVCLEAACAGERWRALPACGHAFHAACVDRWLARAAACPVCRAAVSASAS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0178600 | SBH | 1.424589 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g08200 | RBH | 0.400633 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0178600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0006070 | RBH | 0.402965 | 0.0 | 0.395496 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0006180 | RBH | 0.0 | 0.0 | 0.371291 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0005990 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0005920 | RBH | 0.046977 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0005950 | RBH | 0.698787 | 0.0 | 0.749838 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0074300 | RBH | 1.375766 | 2.777611 | 2.615116 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0005930 | RBH | 0.0 | 0.0 | 0.160207 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0076100 | RBH | 1.055594 | 3.099373 | 2.2026845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0006340 | RBH | 0.0 | 0.160619 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0005910 | RBH | 0.0 | 4.006687 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0006210 | RBH | 1.748374 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0005930 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G006080 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0006040 | RBH | 0.190725 | 3.446550 | 2.055595 |
